Gcaud9586.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9586.t1
Unique Name	Gcaud9586.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	596

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_749_length_18675_cov_4.529918	contig	NODE_749_length_18675_cov_4.529918:569..2356 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703742.1
Preferred name	EDEM2
PFAMs	Glyco_hydro_47
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K01191,ko:K01230,ko:K10084,ko:K10085
KEGG Reaction	R05982,R06722
KEGG Pathway	ko00510,ko00511,ko00513,ko01100,ko04141,map00510,map00511,map00513,map01100,map04141
KEGG Module	M00073,M00074
GOs	GO:0000139,GO:0003674,GO:0003824,GO:0004553,GO:0004559,GO:0004571,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005794,GO:0006464,GO:0006491,GO:0006508,GO:0006511,GO:0006516,GO:0006517,GO:0006807,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009057,GO:0009100,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0010498,GO:0010604,GO:0012505,GO:0015923,GO:0015924,GO:0016020,GO:0016787,GO:0016798,GO:0019222,GO:0019538,GO:0019941,GO:0023052,GO:0030162,GO:0030163,GO:0030246,GO:0030433,GO:0030968,GO:0031090,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031974,GO:0031984,GO:0032268,GO:0032270,GO:0032386,GO:0032388,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0033157,GO:0033554,GO:0034620,GO:0034976,GO:0035966,GO:0035967,GO:0035977,GO:0036211,GO:0036503,GO:0036507,GO:0036508,GO:0036509,GO:0036510,GO:0036511,GO:0036512,GO:0042176,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044322,GO:0044422,GO:0044424,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045732,GO:0045862,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051171,GO:0051173,GO:0051222,GO:0051223,GO:0051246,GO:0051247,GO:0051603,GO:0051716,GO:0060255,GO:0060341,GO:0061136,GO:0065007,GO:0070013,GO:0070201,GO:0070861,GO:0070863,GO:0070887,GO:0071310,GO:0071704,GO:0080090,GO:0080134,GO:0080135,GO:0090087,GO:0090316,GO:0097466,GO:0098588,GO:0098791,GO:1901135,GO:1901136,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901700,GO:1901800,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903827,GO:1903829,GO:1904152,GO:1904154,GO:1904292,GO:1904294,GO:1904380,GO:1904382,GO:1904587,GO:1904951,GO:1905897,GO:1905898
Evalue	2.66e-128
EggNOG OGs	KOG2429@1\|root,KOG2429@2759\|Eukaryota
EC	3.2.1.113,3.2.1.24
Description	mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
COG category	G
CAZy	GH38,GH47
BRITE	ko00000,ko00001,ko00002,ko01000,ko04091,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9586	Gcaud9586	Gracilaria caudata M_176_S67 male	gene	NODE_749_length_18675_cov_4.529918 569..2356 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9586.t1.start1	Gcaud9586.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_749_length_18675_cov_4.529918 569..571 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9586.t1.CDS1	Gcaud9586.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_749_length_18675_cov_4.529918 569..2356 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9586.t1.exon1	Gcaud9586.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_749_length_18675_cov_4.529918 569..2356 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9586.t1.stop1	Gcaud9586.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_749_length_18675_cov_4.529918 2354..2356 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9586.t1	Gcaud9586.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_749_length_18675_cov_4.529918 569..2356 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_749_length_18675_cov_4.529918:569..2356+
coding sequence from alignment at NODE_749_length_18675_cov_4.529918:569..2356+

mRNA sequence

>Gcaud9586.t1 ID=Gcaud9586.t1|Name=Gcaud9586.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=596bp
MCVDACRSHDTRRLTARLLADFDHAYLNYKRHALSHDDLLPISCRGHDTF
GGLNVTLVDTLDTLFVLGNYREFVWAAKHVSQNLHFDVDSTVSVFEITIR
VLGGLLSAHGFLTEPEQHAAFVPALWWPTYDDSLLYLAVQLTERLLPAFN
TPTGIPYGSIHLQNGVLPNESHYASTAAAGSLLLEFGTVSRHTQVPYYYD
VAFEAMQALHQRAAWTGLVGNHINIFNGEWIATDSGVGALIDSFYEYMLK
GYVLFADPRLLSMHESSYNSVRKYVRNRQWFLNVDMWTGRTISTIQSSLS
AFYPGFQVLQGHIPHAIETVRSHYSVWRKYGCLPEGYDVAKSMPTDGQIN
YPLRPELIESMFYLHWATKDPTWVALAESMLHGIEQRTRVECGFAQVHDV
TTGQLYDLMDSFLMSETFKYLYLIFRGEDHWIRNGRYIFTTEAHPLRIPL
HTMKRHSANAQAPPRFKCPRMPSAERLLPCGYGLQGTDYPVWDPSSISSE
QVSDDVMKQVLEIVDRHGAGSLQIGDVFLDNENAYRLMMFRGNRVVFTKL
DEHERQRERLRLANVGCSRERGVDIVSGRCEWQDRSLSKQYVAYQ*

spliced messenger RNA

>Gcaud9586.t1 ID=Gcaud9586.t1|Name=Gcaud9586.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1788bp|location=Sequence derived from alignment at NODE_749_length_18675_cov_4.529918:569..2356+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGTGGATGCGTGCCGATCGCATGACACGCGCCGCTTGACGGCGCG
TCTGTTGGCCGACTTTGACCACGCCTACCTCAATTACAAGCGCCATGCGT
TATCGCACGACGACCTGCTGCCCATTTCGTGCCGCGGCCATGACACGTTT
GGCGGGCTCAACGTGACGCTGGTGGACACTCTTGACACCCTCTTTGTGCT
CGGCAATTATCGCGAGTTCGTGTGGGCCGCCAAGCATGTGTCTCAAAACC
TGCACTTCGACGTCGATTCCACCGTGTCCGTGTTCGAGATCACCATTCGA
GTGCTCGGCGGGCTGCTGTCCGCGCACGGCTTTCTCACCGAGCCTGAGCA
ACACGCTGCGTTCGTGCCCGCGCTGTGGTGGCCCACGTATGATGACTCGC
TTCTGTACCTCGCCGTTCAGTTGACGGAACGTCTGCTGCCGGCGTTCAAC
ACCCCCACCGGCATCCCGTATGGATCCATTCATCTGCAGAACGGTGTGCT
GCCCAACGAGTCTCACTATGCCAGTACCGCTGCCGCAGGATCGCTTCTGC
TCGAGTTTGGCACTGTGTCTCGTCACACGCAAGTACCGTACTACTATGAC
GTCGCCTTTGAGGCCATGCAAGCGCTTCACCAACGCGCCGCTTGGACCGG
TTTAGTCGGCAATCATATCAACATCTTCAACGGCGAATGGATCGCAACCG
ATTCCGGCGTGGGTGCGCTCATTGACTCGTTTTATGAGTACATGCTCAAG
GGCTACGTTCTGTTCGCTGATCCCAGACTTTTGTCCATGCACGAGAGCAG
TTACAACTCCGTGCGCAAGTACGTTCGAAACCGTCAGTGGTTTTTGAATG
TGGATATGTGGACCGGGCGAACCATTTCTACCATCCAGTCCTCTTTGTCT
GCATTCTATCCTGGCTTTCAGGTATTGCAAGGCCATATTCCTCACGCCAT
CGAAACCGTTCGTTCTCACTACAGCGTGTGGAGAAAGTACGGATGTTTGC
CTGAGGGCTATGATGTGGCAAAGAGCATGCCCACCGACGGACAGATCAAC
TATCCGTTGAGACCGGAACTCATCGAGAGCATGTTCTATTTACACTGGGC
AACCAAGGACCCCACTTGGGTTGCACTTGCCGAATCCATGCTGCACGGCA
TTGAGCAAAGGACGCGCGTGGAGTGTGGCTTTGCTCAAGTGCACGATGTC
ACTACCGGCCAACTGTACGATTTGATGGACAGCTTTCTCATGAGCGAAAC
GTTCAAGTACCTGTACCTCATTTTCCGCGGAGAAGACCACTGGATTCGCA
ACGGTAGGTACATCTTTACAACCGAAGCACATCCTTTACGAATTCCACTG
CATACCATGAAGAGGCACAGCGCAAATGCGCAAGCACCACCCCGTTTCAA
ATGCCCTCGAATGCCGAGCGCGGAACGATTGCTACCTTGTGGGTATGGTT
TGCAAGGTACCGACTATCCAGTGTGGGACCCTTCGTCCATCAGTTCGGAA
CAAGTTTCGGATGACGTGATGAAACAAGTGCTGGAAATTGTGGACCGTCA
CGGCGCGGGGTCGCTCCAAATAGGAGACGTGTTTCTGGATAATGAAAACG
CGTATCGTTTGATGATGTTCCGCGGTAATCGCGTTGTGTTTACAAAGTTG
GATGAGCACGAAAGACAGCGAGAGCGATTGAGACTGGCCAACGTTGGCTG
TTCAAGAGAAAGAGGCGTTGATATTGTAAGTGGGCGTTGTGAGTGGCAGG
ATCGTTCACTATCTAAGCAGTATGTGGCGTACCAATGA

protein sequence of Gcaud9586.t1

>Gcaud9586.t1 ID=Gcaud9586.t1|Name=Gcaud9586.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=596bp
MCVDACRSHDTRRLTARLLADFDHAYLNYKRHALSHDDLLPISCRGHDTF
GGLNVTLVDTLDTLFVLGNYREFVWAAKHVSQNLHFDVDSTVSVFEITIR
VLGGLLSAHGFLTEPEQHAAFVPALWWPTYDDSLLYLAVQLTERLLPAFN
TPTGIPYGSIHLQNGVLPNESHYASTAAAGSLLLEFGTVSRHTQVPYYYD
VAFEAMQALHQRAAWTGLVGNHINIFNGEWIATDSGVGALIDSFYEYMLK
GYVLFADPRLLSMHESSYNSVRKYVRNRQWFLNVDMWTGRTISTIQSSLS
AFYPGFQVLQGHIPHAIETVRSHYSVWRKYGCLPEGYDVAKSMPTDGQIN
YPLRPELIESMFYLHWATKDPTWVALAESMLHGIEQRTRVECGFAQVHDV
TTGQLYDLMDSFLMSETFKYLYLIFRGEDHWIRNGRYIFTTEAHPLRIPL
HTMKRHSANAQAPPRFKCPRMPSAERLLPCGYGLQGTDYPVWDPSSISSE
QVSDDVMKQVLEIVDRHGAGSLQIGDVFLDNENAYRLMMFRGNRVVFTKL
DEHERQRERLRLANVGCSRERGVDIVSGRCEWQDRSLSKQYVAYQ*

mRNA from alignment at NODE_749_length_18675_cov_4.529918:569..2356+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9586.t1 ID=Gcaud9586.t1|Name=Gcaud9586.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1788bp|location=Sequence derived from alignment at NODE_749_length_18675_cov_4.529918:569..2356+ (Gracilaria caudata M_176_S67 male)
ATGTGCGTGGATGCGTGCCGATCGCATGACACGCGCCGCTTGACGGCGCG
TCTGTTGGCCGACTTTGACCACGCCTACCTCAATTACAAGCGCCATGCGT
TATCGCACGACGACCTGCTGCCCATTTCGTGCCGCGGCCATGACACGTTT
GGCGGGCTCAACGTGACGCTGGTGGACACTCTTGACACCCTCTTTGTGCT
CGGCAATTATCGCGAGTTCGTGTGGGCCGCCAAGCATGTGTCTCAAAACC
TGCACTTCGACGTCGATTCCACCGTGTCCGTGTTCGAGATCACCATTCGA
GTGCTCGGCGGGCTGCTGTCCGCGCACGGCTTTCTCACCGAGCCTGAGCA
ACACGCTGCGTTCGTGCCCGCGCTGTGGTGGCCCACGTATGATGACTCGC
TTCTGTACCTCGCCGTTCAGTTGACGGAACGTCTGCTGCCGGCGTTCAAC
ACCCCCACCGGCATCCCGTATGGATCCATTCATCTGCAGAACGGTGTGCT
GCCCAACGAGTCTCACTATGCCAGTACCGCTGCCGCAGGATCGCTTCTGC
TCGAGTTTGGCACTGTGTCTCGTCACACGCAAGTACCGTACTACTATGAC
GTCGCCTTTGAGGCCATGCAAGCGCTTCACCAACGCGCCGCTTGGACCGG
TTTAGTCGGCAATCATATCAACATCTTCAACGGCGAATGGATCGCAACCG
ATTCCGGCGTGGGTGCGCTCATTGACTCGTTTTATGAGTACATGCTCAAG
GGCTACGTTCTGTTCGCTGATCCCAGACTTTTGTCCATGCACGAGAGCAG
TTACAACTCCGTGCGCAAGTACGTTCGAAACCGTCAGTGGTTTTTGAATG
TGGATATGTGGACCGGGCGAACCATTTCTACCATCCAGTCCTCTTTGTCT
GCATTCTATCCTGGCTTTCAGGTATTGCAAGGCCATATTCCTCACGCCAT
CGAAACCGTTCGTTCTCACTACAGCGTGTGGAGAAAGTACGGATGTTTGC
CTGAGGGCTATGATGTGGCAAAGAGCATGCCCACCGACGGACAGATCAAC
TATCCGTTGAGACCGGAACTCATCGAGAGCATGTTCTATTTACACTGGGC
AACCAAGGACCCCACTTGGGTTGCACTTGCCGAATCCATGCTGCACGGCA
TTGAGCAAAGGACGCGCGTGGAGTGTGGCTTTGCTCAAGTGCACGATGTC
ACTACCGGCCAACTGTACGATTTGATGGACAGCTTTCTCATGAGCGAAAC
GTTCAAGTACCTGTACCTCATTTTCCGCGGAGAAGACCACTGGATTCGCA
ACGGTAGGTACATCTTTACAACCGAAGCACATCCTTTACGAATTCCACTG
CATACCATGAAGAGGCACAGCGCAAATGCGCAAGCACCACCCCGTTTCAA
ATGCCCTCGAATGCCGAGCGCGGAACGATTGCTACCTTGTGGGTATGGTT
TGCAAGGTACCGACTATCCAGTGTGGGACCCTTCGTCCATCAGTTCGGAA
CAAGTTTCGGATGACGTGATGAAACAAGTGCTGGAAATTGTGGACCGTCA
CGGCGCGGGGTCGCTCCAAATAGGAGACGTGTTTCTGGATAATGAAAACG
CGTATCGTTTGATGATGTTCCGCGGTAATCGCGTTGTGTTTACAAAGTTG
GATGAGCACGAAAGACAGCGAGAGCGATTGAGACTGGCCAACGTTGGCTG
TTCAAGAGAAAGAGGCGTTGATATTGTAAGTGGGCGTTGTGAGTGGCAGG
ATCGTTCACTATCTAAGCAGTATGTGGCGTACCAATGA

Coding sequence (CDS) from alignment at NODE_749_length_18675_cov_4.529918:569..2356+

>Gcaud9586.t1 ID=Gcaud9586.t1|Name=Gcaud9586.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1788bp|location=Sequence derived from alignment at NODE_749_length_18675_cov_4.529918:569..2356+ (Gracilaria caudata M_176_S67 male)
ATGTGCGTGGATGCGTGCCGATCGCATGACACGCGCCGCTTGACGGCGCG
TCTGTTGGCCGACTTTGACCACGCCTACCTCAATTACAAGCGCCATGCGT
TATCGCACGACGACCTGCTGCCCATTTCGTGCCGCGGCCATGACACGTTT
GGCGGGCTCAACGTGACGCTGGTGGACACTCTTGACACCCTCTTTGTGCT
CGGCAATTATCGCGAGTTCGTGTGGGCCGCCAAGCATGTGTCTCAAAACC
TGCACTTCGACGTCGATTCCACCGTGTCCGTGTTCGAGATCACCATTCGA
GTGCTCGGCGGGCTGCTGTCCGCGCACGGCTTTCTCACCGAGCCTGAGCA
ACACGCTGCGTTCGTGCCCGCGCTGTGGTGGCCCACGTATGATGACTCGC
TTCTGTACCTCGCCGTTCAGTTGACGGAACGTCTGCTGCCGGCGTTCAAC
ACCCCCACCGGCATCCCGTATGGATCCATTCATCTGCAGAACGGTGTGCT
GCCCAACGAGTCTCACTATGCCAGTACCGCTGCCGCAGGATCGCTTCTGC
TCGAGTTTGGCACTGTGTCTCGTCACACGCAAGTACCGTACTACTATGAC
GTCGCCTTTGAGGCCATGCAAGCGCTTCACCAACGCGCCGCTTGGACCGG
TTTAGTCGGCAATCATATCAACATCTTCAACGGCGAATGGATCGCAACCG
ATTCCGGCGTGGGTGCGCTCATTGACTCGTTTTATGAGTACATGCTCAAG
GGCTACGTTCTGTTCGCTGATCCCAGACTTTTGTCCATGCACGAGAGCAG
TTACAACTCCGTGCGCAAGTACGTTCGAAACCGTCAGTGGTTTTTGAATG
TGGATATGTGGACCGGGCGAACCATTTCTACCATCCAGTCCTCTTTGTCT
GCATTCTATCCTGGCTTTCAGGTATTGCAAGGCCATATTCCTCACGCCAT
CGAAACCGTTCGTTCTCACTACAGCGTGTGGAGAAAGTACGGATGTTTGC
CTGAGGGCTATGATGTGGCAAAGAGCATGCCCACCGACGGACAGATCAAC
TATCCGTTGAGACCGGAACTCATCGAGAGCATGTTCTATTTACACTGGGC
AACCAAGGACCCCACTTGGGTTGCACTTGCCGAATCCATGCTGCACGGCA
TTGAGCAAAGGACGCGCGTGGAGTGTGGCTTTGCTCAAGTGCACGATGTC
ACTACCGGCCAACTGTACGATTTGATGGACAGCTTTCTCATGAGCGAAAC
GTTCAAGTACCTGTACCTCATTTTCCGCGGAGAAGACCACTGGATTCGCA
ACGGTAGGTACATCTTTACAACCGAAGCACATCCTTTACGAATTCCACTG
CATACCATGAAGAGGCACAGCGCAAATGCGCAAGCACCACCCCGTTTCAA
ATGCCCTCGAATGCCGAGCGCGGAACGATTGCTACCTTGTGGGTATGGTT
TGCAAGGTACCGACTATCCAGTGTGGGACCCTTCGTCCATCAGTTCGGAA
CAAGTTTCGGATGACGTGATGAAACAAGTGCTGGAAATTGTGGACCGTCA
CGGCGCGGGGTCGCTCCAAATAGGAGACGTGTTTCTGGATAATGAAAACG
CGTATCGTTTGATGATGTTCCGCGGTAATCGCGTTGTGTTTACAAAGTTG
GATGAGCACGAAAGACAGCGAGAGCGATTGAGACTGGCCAACGTTGGCTG
TTCAAGAGAAAGAGGCGTTGATATTGTAAGTGGGCGTTGTGAGTGGCAGG
ATCGTTCACTATCTAAGCAGTATGTGGCGTACCAATGA