Gcaud9584.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9584.t1
Unique NameGcaud9584.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length160
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_4332_length_2363_cov_4.693662contigNODE_4332_length_2363_cov_4.693662:923..1402 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708220.1
Preferred nameSLY1
PFAMsSec1
Max annot lvl2759|Eukaryota
KEGG koko:K19998
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
Evalue1.35e-26
EggNOG OGsCOG5158@1|root,KOG1301@2759|Eukaryota
Descriptionvesicle docking involved in exocytosis
COG categoryU
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9584Gcaud9584Gracilaria caudata M_176_S67 malegeneNODE_4332_length_2363_cov_4.693662 923..1402 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9584.t1.stop1Gcaud9584.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_4332_length_2363_cov_4.693662 923..925 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9584.t1.CDS1Gcaud9584.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_4332_length_2363_cov_4.693662 923..1402 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9584.t1.exon1Gcaud9584.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_4332_length_2363_cov_4.693662 923..1402 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9584.t1.start1Gcaud9584.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_4332_length_2363_cov_4.693662 1400..1402 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9584.t1Gcaud9584.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_4332_length_2363_cov_4.693662 923..1402 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9584.t1 ID=Gcaud9584.t1|Name=Gcaud9584.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=160bp
MVADAVENALQTYQQEVQESNRSAGAIIDEPIDPATASLREDANTNKLAA
VISSMPEFSQKKRTIDLHTNLAAAILDQIRNRGLDGFFQLEEEVLSRPST
FDEERILALLRNMKGTPTDKLRLLLVYYLCVDNASEGELKRCVEALGAAG
SQTYVRMHI*
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spliced messenger RNA

>Gcaud9584.t1 ID=Gcaud9584.t1|Name=Gcaud9584.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=480bp|location=Sequence derived from alignment at NODE_4332_length_2363_cov_4.693662:923..1402- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGCCGATGCTGTTGAAAATGCGCTCCAAACCTATCAACAAGAAGT
GCAAGAATCGAATCGATCGGCTGGAGCTATCATTGACGAACCAATTGATC
CAGCTACTGCTTCGTTAAGGGAAGATGCAAACACGAACAAGTTAGCTGCC
GTTATCTCAAGTATGCCTGAGTTCTCACAGAAGAAACGAACTATTGATCT
TCACACGAATCTTGCTGCTGCGATTCTGGATCAAATTAGAAACCGAGGTC
TCGATGGGTTCTTTCAGTTAGAAGAAGAAGTGCTTTCGCGACCGAGCACC
TTCGATGAAGAGCGCATTTTGGCCTTGCTGCGAAACATGAAGGGAACCCC
GACGGATAAACTAAGACTGCTTTTGGTCTACTATTTATGCGTGGACAATG
CGAGTGAAGGCGAACTGAAGAGATGTGTCGAAGCGCTTGGTGCCGCTGGA
TCTCAGACCTACGTGCGTATGCATATCTAA
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protein sequence of Gcaud9584.t1

>Gcaud9584.t1 ID=Gcaud9584.t1|Name=Gcaud9584.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=160bp
MVADAVENALQTYQQEVQESNRSAGAIIDEPIDPATASLREDANTNKLAA
VISSMPEFSQKKRTIDLHTNLAAAILDQIRNRGLDGFFQLEEEVLSRPST
FDEERILALLRNMKGTPTDKLRLLLVYYLCVDNASEGELKRCVEALGAAG
SQTYVRMHI*
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mRNA from alignment at NODE_4332_length_2363_cov_4.693662:923..1402-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9584.t1 ID=Gcaud9584.t1|Name=Gcaud9584.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=480bp|location=Sequence derived from alignment at NODE_4332_length_2363_cov_4.693662:923..1402- (Gracilaria caudata M_176_S67 male)
ATGGTGGCCGATGCTGTTGAAAATGCGCTCCAAACCTATCAACAAGAAGT
GCAAGAATCGAATCGATCGGCTGGAGCTATCATTGACGAACCAATTGATC
CAGCTACTGCTTCGTTAAGGGAAGATGCAAACACGAACAAGTTAGCTGCC
GTTATCTCAAGTATGCCTGAGTTCTCACAGAAGAAACGAACTATTGATCT
TCACACGAATCTTGCTGCTGCGATTCTGGATCAAATTAGAAACCGAGGTC
TCGATGGGTTCTTTCAGTTAGAAGAAGAAGTGCTTTCGCGACCGAGCACC
TTCGATGAAGAGCGCATTTTGGCCTTGCTGCGAAACATGAAGGGAACCCC
GACGGATAAACTAAGACTGCTTTTGGTCTACTATTTATGCGTGGACAATG
CGAGTGAAGGCGAACTGAAGAGATGTGTCGAAGCGCTTGGTGCCGCTGGA
TCTCAGACCTACGTGCGTATGCATATCTAA
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Coding sequence (CDS) from alignment at NODE_4332_length_2363_cov_4.693662:923..1402-

>Gcaud9584.t1 ID=Gcaud9584.t1|Name=Gcaud9584.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=480bp|location=Sequence derived from alignment at NODE_4332_length_2363_cov_4.693662:923..1402- (Gracilaria caudata M_176_S67 male)
ATGGTGGCCGATGCTGTTGAAAATGCGCTCCAAACCTATCAACAAGAAGT
GCAAGAATCGAATCGATCGGCTGGAGCTATCATTGACGAACCAATTGATC
CAGCTACTGCTTCGTTAAGGGAAGATGCAAACACGAACAAGTTAGCTGCC
GTTATCTCAAGTATGCCTGAGTTCTCACAGAAGAAACGAACTATTGATCT
TCACACGAATCTTGCTGCTGCGATTCTGGATCAAATTAGAAACCGAGGTC
TCGATGGGTTCTTTCAGTTAGAAGAAGAAGTGCTTTCGCGACCGAGCACC
TTCGATGAAGAGCGCATTTTGGCCTTGCTGCGAAACATGAAGGGAACCCC
GACGGATAAACTAAGACTGCTTTTGGTCTACTATTTATGCGTGGACAATG
CGAGTGAAGGCGAACTGAAGAGATGTGTCGAAGCGCTTGGTGCCGCTGGA
TCTCAGACCTACGTGCGTATGCATATCTAA
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