Gcaud9581.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9581.t1
Unique Name	Gcaud9581.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	356

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_247_length_34315_cov_4.656002	contig	NODE_247_length_34315_cov_4.656002:33016..34315 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705448.1
Preferred name	FER1L6
PFAMs	C2,FerA,FerB,FerI,Ferlin_C
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K18261,ko:K19949,ko:K22125,ko:K22126,ko:K22127
GOs	GO:0000003,GO:0001505,GO:0001775,GO:0001778,GO:0002064,GO:0002065,GO:0002066,GO:0003002,GO:0003006,GO:0003008,GO:0003012,GO:0003013,GO:0003674,GO:0005488,GO:0005509,GO:0005543,GO:0005544,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005768,GO:0005769,GO:0005770,GO:0005783,GO:0005789,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0005887,GO:0005901,GO:0006810,GO:0006836,GO:0006887,GO:0006906,GO:0006928,GO:0006936,GO:0006950,GO:0006996,GO:0007009,GO:0007154,GO:0007267,GO:0007268,GO:0007269,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007292,GO:0007304,GO:0007338,GO:0007343,GO:0007389,GO:0007423,GO:0007600,GO:0007605,GO:0008015,GO:0008021,GO:0008150,GO:0008289,GO:0009266,GO:0009408,GO:0009566,GO:0009605,GO:0009611,GO:0009612,GO:0009628,GO:0009653,GO:0009888,GO:0009966,GO:0009987,GO:0010256,GO:0010646,GO:0010996,GO:0012505,GO:0012506,GO:0015630,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016079,GO:0016082,GO:0016192,GO:0016323,GO:0017156,GO:0019953,GO:0021700,GO:0022411,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0023061,GO:0030027,GO:0030030,GO:0030133,GO:0030139,GO:0030154,GO:0030315,GO:0030317,GO:0030381,GO:0030397,GO:0030658,GO:0030659,GO:0030672,GO:0030703,GO:0030707,GO:0030855,GO:0030947,GO:0031090,GO:0031143,GO:0031224,GO:0031226,GO:0031252,GO:0031253,GO:0031260,GO:0031268,GO:0031300,GO:0031301,GO:0031410,GO:0031965,GO:0031967,GO:0031975,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032809,GO:0032940,GO:0033554,GO:0034605,GO:0034622,GO:0035045,GO:0035612,GO:0036477,GO:0040011,GO:0042060,GO:0042175,GO:0042383,GO:0042734,GO:0042995,GO:0043025,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043583,GO:0043933,GO:0044085,GO:0044297,GO:0044298,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0044703,GO:0044853,GO:0044877,GO:0045055,GO:0045121,GO:0045177,GO:0045178,GO:0045202,GO:0045995,GO:0046872,GO:0046903,GO:0046907,GO:0048232,GO:0048240,GO:0048284,GO:0048468,GO:0048469,GO:0048477,GO:0048489,GO:0048513,GO:0048515,GO:0048583,GO:0048609,GO:0048646,GO:0048731,GO:0048786,GO:0048787,GO:0048839,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0050877,GO:0050885,GO:0050896,GO:0050905,GO:0050954,GO:0051179,GO:0051234,GO:0051239,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051674,GO:0051704,GO:0051716,GO:0060429,GO:0061024,GO:0061025,GO:0065003,GO:0065007,GO:0065008,GO:0070382,GO:0071840,GO:0071944,GO:0090102,GO:0090174,GO:0090287,GO:0097060,GO:0097458,GO:0097479,GO:0097480,GO:0097708,GO:0097722,GO:0098588,GO:0098589,GO:0098590,GO:0098793,GO:0098805,GO:0098827,GO:0098857,GO:0098916,GO:0099003,GO:0099501,GO:0099503,GO:0099504,GO:0099536,GO:0099537,GO:0099643,GO:0120025,GO:0120036,GO:0120038,GO:0140029,GO:2000026
Evalue	3.37e-25
EggNOG OGs	KOG1326@1\|root,KOG1326@2759\|Eukaryota
Description	plasma membrane repair
COG category	S
BRITE	ko00000,ko04131,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9581	Gcaud9581	Gracilaria caudata M_176_S67 male	gene	NODE_247_length_34315_cov_4.656002 33016..34315 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9581.t1	Gcaud9581.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_247_length_34315_cov_4.656002 33016..34315 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9581.t1.start1	Gcaud9581.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_247_length_34315_cov_4.656002 33016..33018 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9581.t1.CDS1	Gcaud9581.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_247_length_34315_cov_4.656002 33016..33582 +
Gcaud9581.t1.CDS2	Gcaud9581.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_247_length_34315_cov_4.656002 33817..34315 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9581.t1.exon1	Gcaud9581.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_247_length_34315_cov_4.656002 33016..33582 +
Gcaud9581.t1.exon2	Gcaud9581.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_247_length_34315_cov_4.656002 33817..34315 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9581.t1.intron1	Gcaud9581.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_247_length_34315_cov_4.656002 33583..33816 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_247_length_34315_cov_4.656002:33016..34315+
coding sequence from alignment at NODE_247_length_34315_cov_4.656002:33016..34315+

mRNA sequence

>Gcaud9581.t1 ID=Gcaud9581.t1|Name=Gcaud9581.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=356bp
MLTPKMGYSPLLAINAKFNGWIYDPKIREIRVSSEQVLELSASSPAAAAS
ASASASAHSPAQSPSRGVDTVTVDATIVQKRGRGKAFVVSEAAGFVSPTT
GDGLEFDADRVDERVVAHAHGAGEMFEQFFHVEICLRHLAELHAKYTSVW
VEWIYNDMVIDRSVIRDLSTSAEWKGFGASFDNYTLQGEYRAAGLRASAR
ITPVDSSSYSYRRMLSRLPNGEWTVRVNVFELRNLRVMDDSGSSDPFVCA
TVMGITKKTGRQRQTLSCMVNELLFFSSVRTGLEFEDEKIVVEVMDWNRT
GAPKKIGVYTVDAKRMLDLPGHEVYRKWFALQNPSGGKRPAGFIKMSITV
VPPGGX

spliced messenger RNA

>Gcaud9581.t1 ID=Gcaud9581.t1|Name=Gcaud9581.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1066bp|location=Sequence derived from alignment at NODE_247_length_34315_cov_4.656002:33016..34315+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCACGCCCAAAATGGGCTATTCGCCGTTGCTGGCGATCAATGCAAA
GTTCAATGGCTGGATATATGACCCCAAGATCCGCGAGATTCGCGTCAGTA
GTGAGCAAGtgcttgagctttctgcgtcgtcgcctgctgctgctgcttct
gcctctgcttctgcgtccgcGCACTCGCCTGCGCAGTCGCCGTCGCGGGG
GGTGGACACCGTGACGGTGGATGCCACCATTGTGCAAAAGCGCGGCAGGG
GGAAGGCGTTTGTGGTGTCGGAGGCGGCGGGCTTTGTGTCGCCTACCACC
GGCGATGGGCTGGAGTTTGACGCTGACCGTGTGGACGAGCGTGTGGTGGC
GCATGCGCACGGCGCCGGAGAGATGTTTGAGCAGTTCTTTCACGTGGAGA
TTTGTCTCAGACATTTGGCTGAGCTGCATGCAAAGTATACCAGCGTATGG
GTGGAGTGGATTTATAATGACATGGTGATTGACCGCTCGGTCATCCGTGA
CCTTTCCACCTCGGCCGAGTGGAAGGGCTTTGGTGCCTCGTTTGACAACT
ACACGCTGCAGGGTGAGTACCGCGCGGCGGGGCTGCGCGCGTCGGCACGC
ATCACGCCCGTGGATAGCAGCAGCTACTCGTACCGACGGATGCTCAGCCG
CTTGCCCAACGGCGAGTGGACGGTGAGAGTGAACGTTTTTGAGCTGCGCA
ATCTGCGCGTCATGGACGATTCGGGGAGTTCGGACCCGTTTGTGTGCGCC
ACCGTGATGGGCATCACCAAGAAGACGGGGCGTCAACGACAGACGCTCAG
CTGTATGGTGAACGAATTGCTCTTTTTTTCTAGCGTGCGCACCGGGCTCG
AGTTTGAGGACGAGAAGATCGTGGTTGAGGTGATGGACTGGAATCGAACT
GGTGCGCCCAAGAAGATTGGCGTGTATACGGTTGACGCCAAACGAATGCT
CGATCTTCCTGGCCACGAGGTGTACCGAAAGTGGTTTGCACTGCAGAACC
CGAGCGGAGGCAAACGGCCGGCCGGCTTCATCAAAATGTCCATCACAGTC
GTGCCGCCCGGAGGCT

protein sequence of Gcaud9581.t1

>Gcaud9581.t1 ID=Gcaud9581.t1|Name=Gcaud9581.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=356bp
MLTPKMGYSPLLAINAKFNGWIYDPKIREIRVSSEQVLELSASSPAAAAS
ASASASAHSPAQSPSRGVDTVTVDATIVQKRGRGKAFVVSEAAGFVSPTT
GDGLEFDADRVDERVVAHAHGAGEMFEQFFHVEICLRHLAELHAKYTSVW
VEWIYNDMVIDRSVIRDLSTSAEWKGFGASFDNYTLQGEYRAAGLRASAR
ITPVDSSSYSYRRMLSRLPNGEWTVRVNVFELRNLRVMDDSGSSDPFVCA
TVMGITKKTGRQRQTLSCMVNELLFFSSVRTGLEFEDEKIVVEVMDWNRT
GAPKKIGVYTVDAKRMLDLPGHEVYRKWFALQNPSGGKRPAGFIKMSITV
VPPGGX

mRNA from alignment at NODE_247_length_34315_cov_4.656002:33016..34315+

Legend: polypeptidestart_codonCDSexonintron

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9581.t1 ID=Gcaud9581.t1|Name=Gcaud9581.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1300bp|location=Sequence derived from alignment at NODE_247_length_34315_cov_4.656002:33016..34315+ (Gracilaria caudata M_176_S67 male)
ATGCTCACGCCCAAAATGGGCTATTCGCCGTTGCTGGCGATCAATGCAAA
GTTCAATGGCTGGATATATGACCCCAAGATCCGCGAGATTCGCGTCAGTA
GTGAGCAAGtgcttgagctttctgcgtcgtcgcctgctgctgctgcttct
gcctctgcttctgcgtccgcGCACTCGCCTGCGCAGTCGCCGTCGCGGGG
GGTGGACACCGTGACGGTGGATGCCACCATTGTGCAAAAGCGCGGCAGGG
GGAAGGCGTTTGTGGTGTCGGAGGCGGCGGGCTTTGTGTCGCCTACCACC
GGCGATGGGCTGGAGTTTGACGCTGACCGTGTGGACGAGCGTGTGGTGGC
GCATGCGCACGGCGCCGGAGAGATGTTTGAGCAGTTCTTTCACGTGGAGA
TTTGTCTCAGACATTTGGCTGAGCTGCATGCAAAGTATACCAGCGTATGG
GTGGAGTGGATTTATAATGACATGGTGATTGACCGCTCGGTCATCCGTGA
CCTTTCCACCTCGGCCGAGTGGAAGGGCTTTGGTGCCTCGTTTGACAACT
ACACGCTGCAGGGTGAGGTGCGATTGGCCGTTGCGCGCGGACACCACCGT
CGCGAAGGGCGGCTTTTTTTATGTGCCCACTCGCCTGGTTCTTCGCGGCA
GACACGGCCTGCCCATCTTTGCGAACGACGGCGCGCGTCGTTTCACGCGC
GGCTCACCGCCCACCAGCGTCATTGGCGAAATCCGCATGAGCGCGCTGGG
CATTGGCGTGGGCGCCGATGCGGATGGCATCACGCGCTGGGATGTGAGCA
GTACCGCGCGGCGGGGCTGCGCGCGTCGGCACGCATCACGCCCGTGGATA
GCAGCAGCTACTCGTACCGACGGATGCTCAGCCGCTTGCCCAACGGCGAG
TGGACGGTGAGAGTGAACGTTTTTGAGCTGCGCAATCTGCGCGTCATGGA
CGATTCGGGGAGTTCGGACCCGTTTGTGTGCGCCACCGTGATGGGCATCA
CCAAGAAGACGGGGCGTCAACGACAGACGCTCAGCTGTATGGTGAACGAA
TTGCTCTTTTTTTCTAGCGTGCGCACCGGGCTCGAGTTTGAGGACGAGAA
GATCGTGGTTGAGGTGATGGACTGGAATCGAACTGGTGCGCCCAAGAAGA
TTGGCGTGTATACGGTTGACGCCAAACGAATGCTCGATCTTCCTGGCCAC
GAGGTGTACCGAAAGTGGTTTGCACTGCAGAACCCGAGCGGAGGCAAACG
GCCGGCCGGCTTCATCAAAATGTCCATCACAGTCGTGCCGCCCGGAGGCT

Coding sequence (CDS) from alignment at NODE_247_length_34315_cov_4.656002:33016..34315+

>Gcaud9581.t1 ID=Gcaud9581.t1|Name=Gcaud9581.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1066bp|location=Sequence derived from alignment at NODE_247_length_34315_cov_4.656002:33016..34315+ (Gracilaria caudata M_176_S67 male)
ATGCTCACGCCCAAAATGGGCTATTCGCCGTTGCTGGCGATCAATGCAAA
GTTCAATGGCTGGATATATGACCCCAAGATCCGCGAGATTCGCGTCAGTA
GTGAGCAAGtgcttgagctttctgcgtcgtcgcctgctgctgctgcttct
gcctctgcttctgcgtccgcGCACTCGCCTGCGCAGTCGCCGTCGCGGGG
GGTGGACACCGTGACGGTGGATGCCACCATTGTGCAAAAGCGCGGCAGGG
GGAAGGCGTTTGTGGTGTCGGAGGCGGCGGGCTTTGTGTCGCCTACCACC
GGCGATGGGCTGGAGTTTGACGCTGACCGTGTGGACGAGCGTGTGGTGGC
GCATGCGCACGGCGCCGGAGAGATGTTTGAGCAGTTCTTTCACGTGGAGA
TTTGTCTCAGACATTTGGCTGAGCTGCATGCAAAGTATACCAGCGTATGG
GTGGAGTGGATTTATAATGACATGGTGATTGACCGCTCGGTCATCCGTGA
CCTTTCCACCTCGGCCGAGTGGAAGGGCTTTGGTGCCTCGTTTGACAACT
ACACGCTGCAGGGTGAGTACCGCGCGGCGGGGCTGCGCGCGTCGGCACGC
ATCACGCCCGTGGATAGCAGCAGCTACTCGTACCGACGGATGCTCAGCCG
CTTGCCCAACGGCGAGTGGACGGTGAGAGTGAACGTTTTTGAGCTGCGCA
ATCTGCGCGTCATGGACGATTCGGGGAGTTCGGACCCGTTTGTGTGCGCC
ACCGTGATGGGCATCACCAAGAAGACGGGGCGTCAACGACAGACGCTCAG
CTGTATGGTGAACGAATTGCTCTTTTTTTCTAGCGTGCGCACCGGGCTCG
AGTTTGAGGACGAGAAGATCGTGGTTGAGGTGATGGACTGGAATCGAACT
GGTGCGCCCAAGAAGATTGGCGTGTATACGGTTGACGCCAAACGAATGCT
CGATCTTCCTGGCCACGAGGTGTACCGAAAGTGGTTTGCACTGCAGAACC
CGAGCGGAGGCAAACGGCCGGCCGGCTTCATCAAAATGTCCATCACAGTC
GTGCCGCCCGGAGGCT