Gcaud9579.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9579.t1
Unique Name	Gcaud9579.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	400

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_247_length_34315_cov_4.656002	contig	NODE_247_length_34315_cov_4.656002:28147..29481 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	351016.RAZWK3B_06307
PFAMs	GDPD
Max annot lvl	28211\|Alphaproteobacteria
KEGG rclass	RC00017,RC00425
KEGG ko	ko:K01126
KEGG Reaction	R01030,R01470
KEGG Pathway	ko00564,map00564
Evalue	8.01e-172
EggNOG OGs	COG0584@1\|root,COG0584@2\|Bacteria,1MVWZ@1224\|Proteobacteria,2V9HI@28211\|Alphaproteobacteria,2P1Z7@2433\|Roseobacter
EC	3.1.4.46
Description	COG0584 Glycerophosphoryl diester phosphodiesterase
COG category	C
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9579	Gcaud9579	Gracilaria caudata M_176_S67 male	gene	NODE_247_length_34315_cov_4.656002 28147..29481 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9579.t1	Gcaud9579.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_247_length_34315_cov_4.656002 28147..29481 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9579.t1.stop1	Gcaud9579.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_247_length_34315_cov_4.656002 28147..28149 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9579.t1.CDS1	Gcaud9579.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_247_length_34315_cov_4.656002 28147..29087 -
Gcaud9579.t1.CDS2	Gcaud9579.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_247_length_34315_cov_4.656002 29223..29481 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9579.t1.exon1	Gcaud9579.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_247_length_34315_cov_4.656002 28147..29087 -
Gcaud9579.t1.exon2	Gcaud9579.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_247_length_34315_cov_4.656002 29223..29481 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9579.t1.intron1	Gcaud9579.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_247_length_34315_cov_4.656002 29088..29222 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9579.t1.start1	Gcaud9579.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_247_length_34315_cov_4.656002 29479..29481 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_247_length_34315_cov_4.656002:28147..29481-
coding sequence from alignment at NODE_247_length_34315_cov_4.656002:28147..29481-

mRNA sequence

>Gcaud9579.t1 ID=Gcaud9579.t1|Name=Gcaud9579.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=400bp
MLFRIALLTLFSLAFASTPLTYGPRPFYLVDEMRPSDLKASLQKCMSQTP
NTSLFSIGHRGACMQFPEHTKESYVAAARMGAGILECDVTFTSDLELVCR
HSQCDLHTTTNILATDLASKCSEPFTPAEGDKPASAKCCTSDITLAEFKT
LTGKMDAADTSATTVEEYLQGTPSWRTDLYSSSGAVGTLLTHAESIELFR
ELGGKYTPKLKEPSVEMPYKGFTQKQYAQKLIDEYKKAGVSSDDVWAQSF
NLDDVKYWIEYEPRFSNQAVFLDDRYGDETFNLTDPTTYSPSMPELYDMG
VRIIAPPMWFLLTTDDSNKIVRSTYARAAYDAGLDIITWTLERSGAPPSG
WYIQTFKEAVKTDGDVMEILHALATQVKVLGVFTDWPATVTYFANCFGL*

spliced messenger RNA

>Gcaud9579.t1 ID=Gcaud9579.t1|Name=Gcaud9579.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1200bp|location=Sequence derived from alignment at NODE_247_length_34315_cov_4.656002:28147..29481- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCTTCCGCATTGCTCTTCTCACTCTGTTTTCGCTCGCATTCGCCTC
TACGCCTTTAACATATGGCCCGCGTCCCTTTTACCTCGTTGATGAGATGA
GGCCTTCGGACCTGAAGGCTTCATTGCAGAAGTGCATGTCTCAGACACCC
AATACCTCGCTATTCTCAATTGGCCATCGTGGCGCCTGCATGCAGTTCCC
AGAGCATACGAAAGAGTCGTACGTCGCTGCCGCGCGTATGGGCGCTGGAA
TTCTCGAGTGTGACGTCACATTCACAAGCGACTTGGAGCTCGTCTGCCGT
CATTCCCAATGTGATCTGCATACCACTACCAACATCCTTGCGACCGATCT
CGCCTCCAAGTGTTCCGAACCTTTCACACCAGCCGAAGGCGACAAACCGG
CTTCTGCGAAGTGCTGTACGTCTGACATTACCCTCGCCGAATTCAAAACT
CTTACTGGAAAGATGGATGCAGCCGATACGTCTGCAACCACTGTCGAAGA
GTATCTTCAAGGTACTCCTTCGTGGAGAACTGATCTGTACTCTTCTTCCG
GTGCTGTGGGTACTCTACTCACGCATGCTGAATCCATTGAACTTTTCCGT
GAACTGGGTGGTAAGTATACACCGAAATTGAAGGAGCCGAGCGTCGAAAT
GCCGTACAAAGGTTTTACCCAGAAGCAATATGCTCAAAAGCTCATTGATG
AGTACAAGAAGGCCGGTGTTTCTTCAGATGATGTTTGGGCGCAGTCGTTC
AACCTGGACGATGTCAAGTACTGGATTGAATATGAACCACGATTTAGCAA
TCAGGCAGTGTTCCTTGACGACCGTTATGGCGATGAGACTTTCAACCTGA
CAGACCCGACGACCTACTCGCCATCCATGCCTGAGCTTTACGATATGGGC
GTGCGTATTATTGCACCCCCCATGTGGTTCCTTCTCACCACTGATGATTC
GAACAAGATTGTTCGCTCAACTTACGCTCGTGCGGCCTATGACGCTGGAT
TGGATATTATCACATGGACCCTTGAACGTTCTGGCGCACCGCCGTCCGGT
TGGTACATTCAAACCTTTAAGGAAGCTGTCAAAACGGATGGCGACGTCAT
GGAGATTCTTCACGCTCTTGCTACCCAAGTCAAGGTCCTTGGTGTCTTTA
CTGACTGGCCAGCCACCGTTACATACTTTGCAAACTGCTTTGGCCTCTAA

protein sequence of Gcaud9579.t1

>Gcaud9579.t1 ID=Gcaud9579.t1|Name=Gcaud9579.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=400bp
MLFRIALLTLFSLAFASTPLTYGPRPFYLVDEMRPSDLKASLQKCMSQTP
NTSLFSIGHRGACMQFPEHTKESYVAAARMGAGILECDVTFTSDLELVCR
HSQCDLHTTTNILATDLASKCSEPFTPAEGDKPASAKCCTSDITLAEFKT
LTGKMDAADTSATTVEEYLQGTPSWRTDLYSSSGAVGTLLTHAESIELFR
ELGGKYTPKLKEPSVEMPYKGFTQKQYAQKLIDEYKKAGVSSDDVWAQSF
NLDDVKYWIEYEPRFSNQAVFLDDRYGDETFNLTDPTTYSPSMPELYDMG
VRIIAPPMWFLLTTDDSNKIVRSTYARAAYDAGLDIITWTLERSGAPPSG
WYIQTFKEAVKTDGDVMEILHALATQVKVLGVFTDWPATVTYFANCFGL*

mRNA from alignment at NODE_247_length_34315_cov_4.656002:28147..29481-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9579.t1 ID=Gcaud9579.t1|Name=Gcaud9579.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1335bp|location=Sequence derived from alignment at NODE_247_length_34315_cov_4.656002:28147..29481- (Gracilaria caudata M_176_S67 male)
ATGCTCTTCCGCATTGCTCTTCTCACTCTGTTTTCGCTCGCATTCGCCTC
TACGCCTTTAACATATGGCCCGCGTCCCTTTTACCTCGTTGATGAGATGA
GGCCTTCGGACCTGAAGGCTTCATTGCAGAAGTGCATGTCTCAGACACCC
AATACCTCGCTATTCTCAATTGGCCATCGTGGCGCCTGCATGCAGTTCCC
AGAGCATACGAAAGAGTCGTACGTCGCTGCCGCGCGTATGGGCGCTGGAA
TTCTCGAGTGTAAGTGGAATACCTTCCTTCCATGACGCAATGTCATCATT
CATGCTTTGTTCCCATATACTATGTTCGTTAAGCACGTTTTGAATGATAG
CCTAACGCTCTAGTGACACTCTTGTTTACTATGCATTCATACAGGTGACG
TCACATTCACAAGCGACTTGGAGCTCGTCTGCCGTCATTCCCAATGTGAT
CTGCATACCACTACCAACATCCTTGCGACCGATCTCGCCTCCAAGTGTTC
CGAACCTTTCACACCAGCCGAAGGCGACAAACCGGCTTCTGCGAAGTGCT
GTACGTCTGACATTACCCTCGCCGAATTCAAAACTCTTACTGGAAAGATG
GATGCAGCCGATACGTCTGCAACCACTGTCGAAGAGTATCTTCAAGGTAC
TCCTTCGTGGAGAACTGATCTGTACTCTTCTTCCGGTGCTGTGGGTACTC
TACTCACGCATGCTGAATCCATTGAACTTTTCCGTGAACTGGGTGGTAAG
TATACACCGAAATTGAAGGAGCCGAGCGTCGAAATGCCGTACAAAGGTTT
TACCCAGAAGCAATATGCTCAAAAGCTCATTGATGAGTACAAGAAGGCCG
GTGTTTCTTCAGATGATGTTTGGGCGCAGTCGTTCAACCTGGACGATGTC
AAGTACTGGATTGAATATGAACCACGATTTAGCAATCAGGCAGTGTTCCT
TGACGACCGTTATGGCGATGAGACTTTCAACCTGACAGACCCGACGACCT
ACTCGCCATCCATGCCTGAGCTTTACGATATGGGCGTGCGTATTATTGCA
CCCCCCATGTGGTTCCTTCTCACCACTGATGATTCGAACAAGATTGTTCG
CTCAACTTACGCTCGTGCGGCCTATGACGCTGGATTGGATATTATCACAT
GGACCCTTGAACGTTCTGGCGCACCGCCGTCCGGTTGGTACATTCAAACC
TTTAAGGAAGCTGTCAAAACGGATGGCGACGTCATGGAGATTCTTCACGC
TCTTGCTACCCAAGTCAAGGTCCTTGGTGTCTTTACTGACTGGCCAGCCA
CCGTTACATACTTTGCAAACTGCTTTGGCCTCTAA

Coding sequence (CDS) from alignment at NODE_247_length_34315_cov_4.656002:28147..29481-

>Gcaud9579.t1 ID=Gcaud9579.t1|Name=Gcaud9579.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1200bp|location=Sequence derived from alignment at NODE_247_length_34315_cov_4.656002:28147..29481- (Gracilaria caudata M_176_S67 male)
ATGCTCTTCCGCATTGCTCTTCTCACTCTGTTTTCGCTCGCATTCGCCTC
TACGCCTTTAACATATGGCCCGCGTCCCTTTTACCTCGTTGATGAGATGA
GGCCTTCGGACCTGAAGGCTTCATTGCAGAAGTGCATGTCTCAGACACCC
AATACCTCGCTATTCTCAATTGGCCATCGTGGCGCCTGCATGCAGTTCCC
AGAGCATACGAAAGAGTCGTACGTCGCTGCCGCGCGTATGGGCGCTGGAA
TTCTCGAGTGTGACGTCACATTCACAAGCGACTTGGAGCTCGTCTGCCGT
CATTCCCAATGTGATCTGCATACCACTACCAACATCCTTGCGACCGATCT
CGCCTCCAAGTGTTCCGAACCTTTCACACCAGCCGAAGGCGACAAACCGG
CTTCTGCGAAGTGCTGTACGTCTGACATTACCCTCGCCGAATTCAAAACT
CTTACTGGAAAGATGGATGCAGCCGATACGTCTGCAACCACTGTCGAAGA
GTATCTTCAAGGTACTCCTTCGTGGAGAACTGATCTGTACTCTTCTTCCG
GTGCTGTGGGTACTCTACTCACGCATGCTGAATCCATTGAACTTTTCCGT
GAACTGGGTGGTAAGTATACACCGAAATTGAAGGAGCCGAGCGTCGAAAT
GCCGTACAAAGGTTTTACCCAGAAGCAATATGCTCAAAAGCTCATTGATG
AGTACAAGAAGGCCGGTGTTTCTTCAGATGATGTTTGGGCGCAGTCGTTC
AACCTGGACGATGTCAAGTACTGGATTGAATATGAACCACGATTTAGCAA
TCAGGCAGTGTTCCTTGACGACCGTTATGGCGATGAGACTTTCAACCTGA
CAGACCCGACGACCTACTCGCCATCCATGCCTGAGCTTTACGATATGGGC
GTGCGTATTATTGCACCCCCCATGTGGTTCCTTCTCACCACTGATGATTC
GAACAAGATTGTTCGCTCAACTTACGCTCGTGCGGCCTATGACGCTGGAT
TGGATATTATCACATGGACCCTTGAACGTTCTGGCGCACCGCCGTCCGGT
TGGTACATTCAAACCTTTAAGGAAGCTGTCAAAACGGATGGCGACGTCAT
GGAGATTCTTCACGCTCTTGCTACCCAAGTCAAGGTCCTTGGTGTCTTTA
CTGACTGGCCAGCCACCGTTACATACTTTGCAAACTGCTTTGGCCTCTAA