|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 1122214.AQWH01000010_gene2831 |
| Preferred name | nudC |
| PFAMs | NUDIX,NUDIX-like,zf-NADH-PPase |
| Max annot lvl | 28211|Alphaproteobacteria |
| KEGG rclass | RC00002 |
| KEGG ko | ko:K03426 |
| KEGG Reaction | R00103,R03004,R11104 |
| KEGG Pathway | ko00760,ko01100,ko04146,map00760,map01100,map04146 |
| Evalue | 1.25e-42 |
| EggNOG OGs | COG2816@1|root,COG2816@2|Bacteria,1QGCX@1224|Proteobacteria,2TVMG@28211|Alphaproteobacteria,2PJQH@255475|Aurantimonadaceae |
| EC | 3.6.1.22 |
| Description | NADH pyrophosphatase-like rudimentary NUDIX domain |
| COG category | L |
| BRITE | ko00000,ko00001,ko01000 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud9578.t1.start1 | Gcaud9578.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_247_length_34315_cov_4.656002 23646..23648 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Gcaud9578.t1.stop1 | Gcaud9578.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_247_length_34315_cov_4.656002 27390..27392 + |
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud9578.t1 ID=Gcaud9578.t1|Name=Gcaud9578.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=384bp
MLTPETRLYDGTNIMMIDVAWLEHRFCYALGAIVLALLNPKSSCQNLCTL
WAILPDAAERISCCPSKLLNLEKSVLEFALLKNDERLLRGNGKRLNYGQR
SHDPPTETSRNYASSLLGEHIYSTGNMFGITGGTKTVVRYRNMRIANKDW
WPSLSVRHGEVLLGKMGRHYPLYSREFLASMLQLLRMLVRFLSFINAISF
AGSVERRQCRIKVELVVDPVVIMLVLDSSGERTLLGRQSRFPPGMYSCLA
GFMEHGEGIEDAVRREVLEEAGVRVGRVRFFTSQPWPFPYSLMLGCVARA
YSEQISIDPHELEDARWFSRDEVITMMANKESDGRHSVKDGIDADGANHH
CRWNAMTPLVPGRTWFHSLPVPITRSDIVDRFT* back to topspliced messenger RNA >Gcaud9578.t1 ID=Gcaud9578.t1|Name=Gcaud9578.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1152bp|location=Sequence derived from alignment at NODE_247_length_34315_cov_4.656002:23646..27392+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
ATGTTGACACCTGAAACAAGGTTGTACGACGGTACAAACATCATGATGAT
TGACGTGGCATGGTTAGAACATCGATTTTGTTATGCTCTTGGGGCTATTG
TTCTCGCCCTACTCAACCCTAAGTCTTCATGTCAGAATTTATGCACGTTG
TGGGCAATCTTGCCAGACGCAGCAGAGCGTATTTCGTGTTGCCCTTCTAA
GCTACTGAATCTGGAGAAATCTGTGCTGGAATTTGCATTGTTGAAGAATG
ATGAGCGTTTATTACGAGGCAACGGCAAGAGACTAAATTACGGTCAGCGA
TCGCACGATCCACCGACGGAGACGTCTCGCAACTACGCTAGTAGCCTTCT
AGGTGAACATATCTACTCCACTGGAAATATGTTCGGTATAACCGGTGGCA
CGAAGACTGTCGTTCGTTATCGTAACATGAGAATTGCGAACAAGGATTGG
TGGCCTTCGCTGTCCGTCCGACACGGGGAGGTGCTCTTAGGTAAAATGGG
TAGACACTACCCGTTGTATTCTCGCGAATTTCTGGCGTCCATGCTGCAAT
TGCTGCGCATGCTCGTTCGCTTTTTGTCTTTCATCAACGCCATAAGTTTT
GCGGGCAGTGTGGAGCGCAGACAGTGTCGGATCAAGGTGGAGCTCGTCGT
CGACCCCGTGGTCATTATGCTGGTGTTAGATTCGTCGGGAGAGCGCACCT
TGCTGGGTAGACAGAGTCGATTCCCGCCAGGGATGTACTCATGTCTGGCA
GGGTTTATGGAACACGGTGAAGGAATTGAAGACGCTGTTCGACGAGAGGT
TTTAGAAGAGGCTGGTGTTCGCGTTGGCCGCGTACGATTCTTTACTTCAC
AACCTTGGCCTTTCCCATACTCGCTTATGCTTGGGTGTGTCGCACGAGCA
TACTCAGAGCAGATTTCCATTGATCCACATGAATTGGAGGATGCTAGATG
GTTCTCGCGAGATGAGGTCATAACTATGATGGCAAACAAAGAATCCGATG
GAAGGCATAGTGTGAAAGATGGCATTGATGCTGATGGTGCAAATCACCAT
TGCAGGTGGAATGCTATGACGCCCCTGGTCCCCGGACGTACATGGTTCCA
TTCCCTCCCTGTTCCCATTACACGATCCGATATCGTGGACCGATTTACCT
GA back to topprotein sequence of Gcaud9578.t1 >Gcaud9578.t1 ID=Gcaud9578.t1|Name=Gcaud9578.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=384bp
MLTPETRLYDGTNIMMIDVAWLEHRFCYALGAIVLALLNPKSSCQNLCTL
WAILPDAAERISCCPSKLLNLEKSVLEFALLKNDERLLRGNGKRLNYGQR
SHDPPTETSRNYASSLLGEHIYSTGNMFGITGGTKTVVRYRNMRIANKDW
WPSLSVRHGEVLLGKMGRHYPLYSREFLASMLQLLRMLVRFLSFINAISF
AGSVERRQCRIKVELVVDPVVIMLVLDSSGERTLLGRQSRFPPGMYSCLA
GFMEHGEGIEDAVRREVLEEAGVRVGRVRFFTSQPWPFPYSLMLGCVARA
YSEQISIDPHELEDARWFSRDEVITMMANKESDGRHSVKDGIDADGANHH
CRWNAMTPLVPGRTWFHSLPVPITRSDIVDRFT* back to topmRNA from alignment at NODE_247_length_34315_cov_4.656002:23646..27392+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud9578.t1 ID=Gcaud9578.t1|Name=Gcaud9578.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=3747bp|location=Sequence derived from alignment at NODE_247_length_34315_cov_4.656002:23646..27392+ (Gracilaria caudata M_176_S67 male)
ATGTTGACACCTGAAACAAGGTTGTACGACGGTACAAACATCATGATGAT
TGACGTGGCATGGTTAGAACATCGATTTTGTTATGCTCTTGGGGCGTAAG
CGCTTGTTGACCACGATCAAGAATAGTCTTTTCATGATTACAGGGATTTG
ATGTAGATGCCAACGATTCTGGCATCATCTAAGTGACCTTTTATTTGAGT
ATTGTTCTCGCCCTACTCAACCCTAAGTCTTCATGTCAGAATTTATGCAC
GTTGTGGGCAATCTTGCCAGACGCAGCAGAGCGTATTTCGTGTTGGTACG
TTGCCTTCTAACCTCAACCTTACACCATCACATATTTAGGATCGCCAGAT
AGACTACTACCCTTGCTGCCTTTTAATCCCATTTCGATGTACGGATAGCC
CTTCTAAGCTACTGAATCTGGAGAAATCTGTGCTGGAATTTGCATTGTTG
AAGAATGATGAGCGTTTATTACGAGGCAAGTGATTGCAATCTGGGAGAGT
CATCAGGGAACATTGTTCGATGCACTACTTTCGTAGACAGCGGCAAGAGA
CTAAATTACGGTCAGCGATCGCACGATCCACCGACGGAGACGTCTCGCAA
CTACGCTAGTAGCCTTCTAGGTGAACATATCTACTCCACTGGAAATATGT
TCGGTATAACCGGTGGCACGAAGACTGGTATGTTAGGTATCGTCGTCGGA
GAAAAGACTATGTCCGGGAGACAGACAATAGCCCCGCTTGCTTGGGAACC
CGACGGACACGGCATGCACCTCGTTCCACCAGCGCCGGTCTGCACTTCTC
CAGGCGGACACGGCGTGCAAGACGTGGCAAAGTTGATGTTAGCTCCTGCG
CGGAAAGTGCCTGGCGGGCATGGCGAACAGCCTTGCTCACTGTTGAAGAA
GAATCCCGCGTTACAGAAGCAAGTAGTCTGTCCAAGGTCCGGAAACGAGT
TGGGAGCACACGCAATGCATTCCGTTGCAAAGTCGACGTTTGGCCCTTCT
CTGAACTCCCCAGATGGGCAGCGAGCACAAGTGCCGGTAGACGGTACAAA
CAAAAAGCCAGGGTTGCAGAAACACGTAGTTTGAGAGGCAGACGCAACCG
AGTTCGCGCTGCAAGGTCGACAAGAAGGCGAATTCATCCCATCGCTGATA
GTATTCGGTGGACAAGGTGGGCAGATCACTTGCCCGTTAGCCGGATCGGT
GGTACGAAATGTACCCGGCGCGCAGTCGATAGCGGCCACGCGTGAACAGA
GCACTGCCAGAGCGGCAAAGTAGACGACGATGGTGGCGATCATGTCGAAG
AGTTGAAGTTTAGGGGAAACAGAAAAGCCCTTGCCGCATGTAAGCATTTG
AGTTCTGTGTGCCGCCGGTACTTAAATGCCGTCCCCGCACAATTGCAGTA
CCCAGCATCTATCGGTCCTCTGCGTCTAGTCACAATTCTATGATACCATC
GCTTTCGCACCCATAGTTGAATGCACGTTTTAACGTCGGTTGACCAACGC
TATATTCGAGGGAGTGTAGATCCGTGGTTGTAAGCGAAATGAACTCACCA
ATGGGCACAGCGCGATTACAAATTCATGCTGAAGAGCTTCTAGTACCAAG
GTATCCAAGACGGTTACGGTGGTTGACCGTCAACGTGACAGTAACCAGCT
GTGGCCTTCTGATTGGATATGCAGTTCAGAGCTCGGGCTCAGAGCTCCGC
CCGGGTTATTTTTTTGAACGACGTGCTGTTTTTTCCAGTAGGAATCGAGC
AGCTGATCCTCCTGTCGAAGACAACCCAGTTACACACACGCCCAACAAAG
CAAAGTTGTTGCTCACCCCAAATTTGCTTTGCTGACAAAGGCCAGGGTTT
CATCTTAAGCACTATCAAAATATGTTGCTTTTTTGTTTTCTTTCAGCTGA
AGTCGAAACGAAGTCGTACGCTTGCCTGAGGCATTCGTAAACAAGATCCC
GGGACGCGAGAGCTTAGAATAAAAATATAATTTGCGATCTAAAAGTCGTT
CGTTATCGTAACATGAGAATTGCGAACAAGGATTGGTGGCCTTCGCTGTC
CGTCCGACACGGGGAGGTGCTCTTAGGTAAAATGGGTAGACACTACCCGT
TGGTATGTCACGCTATCCCAAATTTACTTCAGGCAGAAGCAAGTGCATTA
AATGTACTACGTGTACAATTGTCACGTTATCACCTTTCGAGTGCCGAAAA
GAGCGTCAGTGAACCGACCTACAAAACGCAAGGCGTTGCAAATTAAATTA
AATGTTTTGGTTTTTTGACAGGTTGCTCATCACACACTGTGACAGGCACT
GCTGCAGCTCATGAAGACGAATAGTGCTCCCTGCCTTTCACGTGCCTTCG
TACAAAGGTACAAGGGTGGGATAACCTTTGTCCCTCGCTTTCGTATTGCA
ATCTTCGACAGATGCAATGTAAATTGCTGTAGCATCAGCACCTCACCGAC
AGGGCTCGTCGGGAGCATAATCGGTCGCGCCCGTTCCTCATTACAACGCA
AGACATGCAGATTTCGCTAATCCCCGACCTGCAGCCATGCGTCTTTGGCG
GTCCCTCCTTAAATCGCCTCAACAACCACCGTCACAAATCAGAAACCCCT
GCTAAGATGGCTCATCCAAATGCGAAGCACCTCATCTTCAACTCTCGGCT
ACAGATCCTGATCCTTTCATCTAATGGCTCTACGTCCCTTGCTCTATTAC
CAGCTGCAACGTGTAGAAACCTCCGTGCCGCCGCCGAAGAGCCCTTGTTG
CTTGGTGTGGACGCCGAAAGCATTCCTTACATCGCACTACGACTGCAGGG
GTTCGGCGATGAACACAGGGCAGCTTTCCCAGCAGATGCGCAATTTGTTC
ACTTGAGATCAGTATTCTCGCGAATTTCTGGCGTCCATGCTGCAATTGCT
GCGCATGCTCGTTCGCTTTTTGTCTTTCATCAACGCCATAAGTTTTGCGG
GCAGTGTGGAGCGCAGACAGTGTCGGATCAAGGTGGAGCTCGTCGTCGGT
GCGTACGAAACGTTCGCGCAGTAGAACCGTCCGAGATGCATATTACTGAT
GAAAACCAATGCGACGGTGTATGGTTTCCTCGCACAGACCCCGTGGTCAT
TATGCTGGTGTTAGATTCGTCGGGAGAGCGCACCTTGCTGGGTAGACAGA
GTCGATTCCCGCCAGGGATGTACTCATGTCTGGCAGGGTTTATGGAACAC
GGTGAAGGAATTGAAGACGCTGTTCGACGAGAGGTTTTAGAAGAGGCTGG
TGTTCGCGTTGGCCGCGTACGATTCTTTACTTCACAACCTTGGCCTTTCC
CATACTCGCTTATGCTTGGGTGTGTCGCACGAGCATACTCAGAGCAGATT
TCCATTGATCCACATGAATTGGAGGATGCTAGATGGTTCTCGCGAGATGA
GGTCATAACTATGATGGCAAACAAAGAATCCGATGGAAGGCATAGTGTGA
AAGATGGCATTGATGCTGATGGTGCAAATCACCATTGTAAGTTGTTTGTT
CCTCCCACAGCTGCTATCGCTGGGAAGCTTTTGGAGATATTTGCATTGCG
AGAACCTATAACATTGTTTGATCTTAAGGCAGGTGGAATGCTATGACGCC
CCTGGTCCCCGGACGTACATGTTTGGTCAAACATTTGACATTCATATTCA
TGGGCAGCTGTTTTCGGAAAACAACACTTGAATTGCAGGGTTCCATTCCC
TCCCTGTTCCCATTACACGATCCGATATCGTGGACCGATTTACCTGA back to topCoding sequence (CDS) from alignment at NODE_247_length_34315_cov_4.656002:23646..27392+ >Gcaud9578.t1 ID=Gcaud9578.t1|Name=Gcaud9578.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1152bp|location=Sequence derived from alignment at NODE_247_length_34315_cov_4.656002:23646..27392+ (Gracilaria caudata M_176_S67 male)
ATGTTGACACCTGAAACAAGGTTGTACGACGGTACAAACATCATGATGAT
TGACGTGGCATGGTTAGAACATCGATTTTGTTATGCTCTTGGGGCTATTG
TTCTCGCCCTACTCAACCCTAAGTCTTCATGTCAGAATTTATGCACGTTG
TGGGCAATCTTGCCAGACGCAGCAGAGCGTATTTCGTGTTGCCCTTCTAA
GCTACTGAATCTGGAGAAATCTGTGCTGGAATTTGCATTGTTGAAGAATG
ATGAGCGTTTATTACGAGGCAACGGCAAGAGACTAAATTACGGTCAGCGA
TCGCACGATCCACCGACGGAGACGTCTCGCAACTACGCTAGTAGCCTTCT
AGGTGAACATATCTACTCCACTGGAAATATGTTCGGTATAACCGGTGGCA
CGAAGACTGTCGTTCGTTATCGTAACATGAGAATTGCGAACAAGGATTGG
TGGCCTTCGCTGTCCGTCCGACACGGGGAGGTGCTCTTAGGTAAAATGGG
TAGACACTACCCGTTGTATTCTCGCGAATTTCTGGCGTCCATGCTGCAAT
TGCTGCGCATGCTCGTTCGCTTTTTGTCTTTCATCAACGCCATAAGTTTT
GCGGGCAGTGTGGAGCGCAGACAGTGTCGGATCAAGGTGGAGCTCGTCGT
CGACCCCGTGGTCATTATGCTGGTGTTAGATTCGTCGGGAGAGCGCACCT
TGCTGGGTAGACAGAGTCGATTCCCGCCAGGGATGTACTCATGTCTGGCA
GGGTTTATGGAACACGGTGAAGGAATTGAAGACGCTGTTCGACGAGAGGT
TTTAGAAGAGGCTGGTGTTCGCGTTGGCCGCGTACGATTCTTTACTTCAC
AACCTTGGCCTTTCCCATACTCGCTTATGCTTGGGTGTGTCGCACGAGCA
TACTCAGAGCAGATTTCCATTGATCCACATGAATTGGAGGATGCTAGATG
GTTCTCGCGAGATGAGGTCATAACTATGATGGCAAACAAAGAATCCGATG
GAAGGCATAGTGTGAAAGATGGCATTGATGCTGATGGTGCAAATCACCAT
TGCAGGTGGAATGCTATGACGCCCCTGGTCCCCGGACGTACATGGTTCCA
TTCCCTCCCTGTTCCCATTACACGATCCGATATCGTGGACCGATTTACCT
GA back to top
|