Gcaud9575.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9575.t1
Unique Name	Gcaud9575.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	356

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_247_length_34315_cov_4.656002	contig	NODE_247_length_34315_cov_4.656002:14591..15757 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	391612.CY0110_02562
PFAMs	adh_short
Max annot lvl	1117\|Cyanobacteria
Evalue	6.01e-71
EggNOG OGs	COG1028@1\|root,COG1028@2\|Bacteria,1G02R@1117\|Cyanobacteria,3KHCV@43988\|Cyanothece
Description	Enoyl-(Acyl carrier protein) reductase
COG category	IQ

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9575	Gcaud9575	Gracilaria caudata M_176_S67 male	gene	NODE_247_length_34315_cov_4.656002 14591..15757 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9575.t1	Gcaud9575.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_247_length_34315_cov_4.656002 14591..15757 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9575.t1.start1	Gcaud9575.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_247_length_34315_cov_4.656002 14591..14593 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9575.t1.CDS1	Gcaud9575.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_247_length_34315_cov_4.656002 14591..14596 +
Gcaud9575.t1.CDS2	Gcaud9575.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_247_length_34315_cov_4.656002 14696..15757 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9575.t1.exon1	Gcaud9575.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_247_length_34315_cov_4.656002 14591..14596 +
Gcaud9575.t1.exon2	Gcaud9575.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_247_length_34315_cov_4.656002 14696..15757 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9575.t1.intron1	Gcaud9575.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_247_length_34315_cov_4.656002 14597..14695 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9575.t1.stop1	Gcaud9575.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_247_length_34315_cov_4.656002 15755..15757 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_247_length_34315_cov_4.656002:14591..15757+
coding sequence from alignment at NODE_247_length_34315_cov_4.656002:14591..15757+

mRNA sequence

>Gcaud9575.t1 ID=Gcaud9575.t1|Name=Gcaud9575.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=356bp
LEARTRIPVMSLKQSTIVITGATRGIGRGLAIGFGEAGGHVIITGRTEKG
PLSLEATAKSVREAGGTCDFHVVDHADDDAVSLFFTTLKRSLREQNRTLD
VWVNNAYSGVEFLLKSMDIPHWLKSASEPEEEDSESAPGKVWDLINGVGL
RTNYICAIYAARIMADQRRGGLIVNISSWGGLVSLFDPVYCIGKGGMDRL
SAELAQASPPNVRCFTLYPGVVGTEMLMEAMKVYEASENGENSGSTPAPI
LTQSQFWNAETPLFVGRVLAAIASSDKQMVDSMNGRIVIAAEAAQRLKVS
DENGHRPLSARSFRYALLHAFPILQRTFLRHCIPTSLYVPWWLVQMITGS
VRVWK*

spliced messenger RNA

>Gcaud9575.t1 ID=Gcaud9575.t1|Name=Gcaud9575.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1068bp|location=Sequence derived from alignment at NODE_247_length_34315_cov_4.656002:14591..15757+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGGAGGCACGAACACGAATACCAGTCATGTCCCTCAAGCAGAGCACAAT
TGTTATAACAGGGGCAACGCGGGGTATAGGGCGTGGTCTTGCTATCGGGT
TTGGCGAAGCAGGTGGACACGTTATCATTACCGGTCGTACGGAAAAGGGA
CCGCTCTCGCTCGAGGCCACAGCGAAAAGTGTTCGTGAAGCAGGCGGCAC
TTGCGACTTTCATGTTGTTGACCATGCCGATGATGATGCCGTTTCGTTGT
TTTTCACCACTCTTAAACGAAGCTTACGAGAGCAGAACAGAACTCTAGAT
GTCTGGGTCAACAACGCGTACTCAGGGGTGGAGTTCCTGCTAAAGAGTAT
GGACATTCCCCATTGGTTGAAGAGCGCTTCCGAACCTGAAGAGGAGGACT
CAGAATCTGCACCAGGTAAAGTATGGGATCTCATAAATGGTGTTGGTCTG
CGGACAAACTATATCTGCGCAATTTACGCTGCTCGCATCATGGCTGATCA
ACGGAGAGGTGGTTTAATTGTTAACATTTCTTCTTGGGGAGGCCTGGTGT
CCTTGTTCGACCCAGTTTATTGTATCGGGAAGGGTGGCATGGATCGACTT
TCAGCGGAATTAGCCCAAGCTAGCCCCCCAAATGTGCGGTGTTTCACGTT
GTATCCTGGTGTCGTTGGCACTGAGATGCTAATGGAAGCGATGAAAGTCT
ATGAAGCATCTGAAAACGGCGAGAATTCGGGTAGCACACCTGCGCCAATT
CTGACTCAAAGCCAGTTTTGGAATGCTGAAACGCCTCTGTTCGTGGGTAG
AGTGCTAGCTGCTATCGCATCAAGTGATAAACAAATGGTTGACTCGATGA
ATGGACGTATTGTAATCGCAGCCGAAGCCGCTCAACGGCTAAAGGTGAGC
GACGAAAATGGACATCGACCTCTCTCTGCACGCTCATTTCGTTATGCACT
GCTACATGCGTTTCCAATTCTGCAGAGGACCTTTTTGCGTCATTGCATTC
CAACATCTCTATATGTGCCGTGGTGGTTGGTTCAAATGATAACAGGCTCT
GTGAGAGTGTGGAAGTAA

protein sequence of Gcaud9575.t1

>Gcaud9575.t1 ID=Gcaud9575.t1|Name=Gcaud9575.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=356bp
LEARTRIPVMSLKQSTIVITGATRGIGRGLAIGFGEAGGHVIITGRTEKG
PLSLEATAKSVREAGGTCDFHVVDHADDDAVSLFFTTLKRSLREQNRTLD
VWVNNAYSGVEFLLKSMDIPHWLKSASEPEEEDSESAPGKVWDLINGVGL
RTNYICAIYAARIMADQRRGGLIVNISSWGGLVSLFDPVYCIGKGGMDRL
SAELAQASPPNVRCFTLYPGVVGTEMLMEAMKVYEASENGENSGSTPAPI
LTQSQFWNAETPLFVGRVLAAIASSDKQMVDSMNGRIVIAAEAAQRLKVS
DENGHRPLSARSFRYALLHAFPILQRTFLRHCIPTSLYVPWWLVQMITGS
VRVWK*

mRNA from alignment at NODE_247_length_34315_cov_4.656002:14591..15757+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9575.t1 ID=Gcaud9575.t1|Name=Gcaud9575.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1167bp|location=Sequence derived from alignment at NODE_247_length_34315_cov_4.656002:14591..15757+ (Gracilaria caudata M_176_S67 male)
TTGGAGGTACGTGCTTGTTCAAATTATGCAATGAATACGTCCAATCCTAG
CTTCATTGGTCCTAACGTTTCAATTGTTCGACTGTTCTTCATGTCCACGC
GACAGGCACGAACACGAATACCAGTCATGTCCCTCAAGCAGAGCACAATT
GTTATAACAGGGGCAACGCGGGGTATAGGGCGTGGTCTTGCTATCGGGTT
TGGCGAAGCAGGTGGACACGTTATCATTACCGGTCGTACGGAAAAGGGAC
CGCTCTCGCTCGAGGCCACAGCGAAAAGTGTTCGTGAAGCAGGCGGCACT
TGCGACTTTCATGTTGTTGACCATGCCGATGATGATGCCGTTTCGTTGTT
TTTCACCACTCTTAAACGAAGCTTACGAGAGCAGAACAGAACTCTAGATG
TCTGGGTCAACAACGCGTACTCAGGGGTGGAGTTCCTGCTAAAGAGTATG
GACATTCCCCATTGGTTGAAGAGCGCTTCCGAACCTGAAGAGGAGGACTC
AGAATCTGCACCAGGTAAAGTATGGGATCTCATAAATGGTGTTGGTCTGC
GGACAAACTATATCTGCGCAATTTACGCTGCTCGCATCATGGCTGATCAA
CGGAGAGGTGGTTTAATTGTTAACATTTCTTCTTGGGGAGGCCTGGTGTC
CTTGTTCGACCCAGTTTATTGTATCGGGAAGGGTGGCATGGATCGACTTT
CAGCGGAATTAGCCCAAGCTAGCCCCCCAAATGTGCGGTGTTTCACGTTG
TATCCTGGTGTCGTTGGCACTGAGATGCTAATGGAAGCGATGAAAGTCTA
TGAAGCATCTGAAAACGGCGAGAATTCGGGTAGCACACCTGCGCCAATTC
TGACTCAAAGCCAGTTTTGGAATGCTGAAACGCCTCTGTTCGTGGGTAGA
GTGCTAGCTGCTATCGCATCAAGTGATAAACAAATGGTTGACTCGATGAA
TGGACGTATTGTAATCGCAGCCGAAGCCGCTCAACGGCTAAAGGTGAGCG
ACGAAAATGGACATCGACCTCTCTCTGCACGCTCATTTCGTTATGCACTG
CTACATGCGTTTCCAATTCTGCAGAGGACCTTTTTGCGTCATTGCATTCC
AACATCTCTATATGTGCCGTGGTGGTTGGTTCAAATGATAACAGGCTCTG
TGAGAGTGTGGAAGTAA

Coding sequence (CDS) from alignment at NODE_247_length_34315_cov_4.656002:14591..15757+

>Gcaud9575.t1 ID=Gcaud9575.t1|Name=Gcaud9575.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1068bp|location=Sequence derived from alignment at NODE_247_length_34315_cov_4.656002:14591..15757+ (Gracilaria caudata M_176_S67 male)
TTGGAGGCACGAACACGAATACCAGTCATGTCCCTCAAGCAGAGCACAAT
TGTTATAACAGGGGCAACGCGGGGTATAGGGCGTGGTCTTGCTATCGGGT
TTGGCGAAGCAGGTGGACACGTTATCATTACCGGTCGTACGGAAAAGGGA
CCGCTCTCGCTCGAGGCCACAGCGAAAAGTGTTCGTGAAGCAGGCGGCAC
TTGCGACTTTCATGTTGTTGACCATGCCGATGATGATGCCGTTTCGTTGT
TTTTCACCACTCTTAAACGAAGCTTACGAGAGCAGAACAGAACTCTAGAT
GTCTGGGTCAACAACGCGTACTCAGGGGTGGAGTTCCTGCTAAAGAGTAT
GGACATTCCCCATTGGTTGAAGAGCGCTTCCGAACCTGAAGAGGAGGACT
CAGAATCTGCACCAGGTAAAGTATGGGATCTCATAAATGGTGTTGGTCTG
CGGACAAACTATATCTGCGCAATTTACGCTGCTCGCATCATGGCTGATCA
ACGGAGAGGTGGTTTAATTGTTAACATTTCTTCTTGGGGAGGCCTGGTGT
CCTTGTTCGACCCAGTTTATTGTATCGGGAAGGGTGGCATGGATCGACTT
TCAGCGGAATTAGCCCAAGCTAGCCCCCCAAATGTGCGGTGTTTCACGTT
GTATCCTGGTGTCGTTGGCACTGAGATGCTAATGGAAGCGATGAAAGTCT
ATGAAGCATCTGAAAACGGCGAGAATTCGGGTAGCACACCTGCGCCAATT
CTGACTCAAAGCCAGTTTTGGAATGCTGAAACGCCTCTGTTCGTGGGTAG
AGTGCTAGCTGCTATCGCATCAAGTGATAAACAAATGGTTGACTCGATGA
ATGGACGTATTGTAATCGCAGCCGAAGCCGCTCAACGGCTAAAGGTGAGC
GACGAAAATGGACATCGACCTCTCTCTGCACGCTCATTTCGTTATGCACT
GCTACATGCGTTTCCAATTCTGCAGAGGACCTTTTTGCGTCATTGCATTC
CAACATCTCTATATGTGCCGTGGTGGTTGGTTCAAATGATAACAGGCTCT
GTGAGAGTGTGGAAGTAA