Gcaud9566.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9566.t1
Unique Name	Gcaud9566.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	242

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_388_length_27163_cov_4.403295	contig	NODE_388_length_27163_cov_4.403295:23003..23728 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9566	Gcaud9566	Gracilaria caudata M_176_S67 male	gene	NODE_388_length_27163_cov_4.403295 23003..23728 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9566.t1.start1	Gcaud9566.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_388_length_27163_cov_4.403295 23003..23005 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9566.t1.CDS1	Gcaud9566.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_388_length_27163_cov_4.403295 23003..23728 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9566.t1.exon1	Gcaud9566.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_388_length_27163_cov_4.403295 23003..23728 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9566.t1.stop1	Gcaud9566.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_388_length_27163_cov_4.403295 23726..23728 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9566.t1	Gcaud9566.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_388_length_27163_cov_4.403295 23003..23728 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_388_length_27163_cov_4.403295:23003..23728+
coding sequence from alignment at NODE_388_length_27163_cov_4.403295:23003..23728+

mRNA sequence

>Gcaud9566.t1 ID=Gcaud9566.t1|Name=Gcaud9566.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=242bp
MVNRKRTISELRTTEVVTSEPVLVGEGKWSPRHKHYVYPAVDYQGTRFRI
GDHVAMYTGDKSDGREWICVLETLYKDPEDGCAKFKGRWFWSVQDVKEHK
KEDSEDMRPSKCESNELICCDNRDTNLVESISRKACILSFDNFALVRRTV
LKNDSPWKRIYFCERQFYHKAHRFSELNSILFPGDPIPNDLRKAAGLPPQ
EHTELESEVDYDNAYHEPELTARTKRKTRNEKLTSEPILLW*

spliced messenger RNA

>Gcaud9566.t1 ID=Gcaud9566.t1|Name=Gcaud9566.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=726bp|location=Sequence derived from alignment at NODE_388_length_27163_cov_4.403295:23003..23728+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGAACCGCAAGCGCACCATCTCCGAGCTTCGCACCACCGAAGTGGT
CACGTCGGAGCCTGTGCTTGTCGGCGAAGGCAAATGGTCCCCGCGTCACA
AGCACTACGTGTATCCGGCAGTCGATTATCAGGGCACCCGCTTCCGCATC
GGTGATCATGTCGCCATGTACACCGGCGACAAGTCCGACGGCCGCGAGTG
GATTTGCGTGTTAGAAACTCTCTACAAGGACCCCGAAGACGGTTGTGCAA
AGTTCAAAGGCAGATGGTTCTGGTCCGTTCAAGACGTGAAGGAACATAAA
AAAGAAGATAGCGAAGATATGCGTCCAAGCAAATGCGAGAGCAATGAGCT
CATATGCTGTGATAACCGAGATACAAACCTGGTCGAATCCATTAGTAGAA
AGGCTTGCATATTGAGTTTCGATAATTTCGCACTTGTTAGAAGAACCGTG
TTGAAAAATGATTCGCCTTGGAAGAGGATCTACTTCTGTGAGCGACAGTT
CTATCACAAGGCACATCGTTTCAGTGAGTTGAACTCCATTCTCTTCCCGG
GCGATCCCATACCGAATGACTTACGAAAGGCTGCCGGGTTGCCACCGCAG
GAACACACAGAACTGGAAAGCGAAGTCGACTACGACAACGCCTACCATGA
ACCCGAACTCACCGCCCGCACAAAACGAAAGACGCGCAACGAAAAGCTAA
CGTCAGAACCAATACTACTGTGGTAG

protein sequence of Gcaud9566.t1

>Gcaud9566.t1 ID=Gcaud9566.t1|Name=Gcaud9566.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=242bp
MVNRKRTISELRTTEVVTSEPVLVGEGKWSPRHKHYVYPAVDYQGTRFRI
GDHVAMYTGDKSDGREWICVLETLYKDPEDGCAKFKGRWFWSVQDVKEHK
KEDSEDMRPSKCESNELICCDNRDTNLVESISRKACILSFDNFALVRRTV
LKNDSPWKRIYFCERQFYHKAHRFSELNSILFPGDPIPNDLRKAAGLPPQ
EHTELESEVDYDNAYHEPELTARTKRKTRNEKLTSEPILLW*

mRNA from alignment at NODE_388_length_27163_cov_4.403295:23003..23728+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9566.t1 ID=Gcaud9566.t1|Name=Gcaud9566.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=726bp|location=Sequence derived from alignment at NODE_388_length_27163_cov_4.403295:23003..23728+ (Gracilaria caudata M_176_S67 male)
ATGGTGAACCGCAAGCGCACCATCTCCGAGCTTCGCACCACCGAAGTGGT
CACGTCGGAGCCTGTGCTTGTCGGCGAAGGCAAATGGTCCCCGCGTCACA
AGCACTACGTGTATCCGGCAGTCGATTATCAGGGCACCCGCTTCCGCATC
GGTGATCATGTCGCCATGTACACCGGCGACAAGTCCGACGGCCGCGAGTG
GATTTGCGTGTTAGAAACTCTCTACAAGGACCCCGAAGACGGTTGTGCAA
AGTTCAAAGGCAGATGGTTCTGGTCCGTTCAAGACGTGAAGGAACATAAA
AAAGAAGATAGCGAAGATATGCGTCCAAGCAAATGCGAGAGCAATGAGCT
CATATGCTGTGATAACCGAGATACAAACCTGGTCGAATCCATTAGTAGAA
AGGCTTGCATATTGAGTTTCGATAATTTCGCACTTGTTAGAAGAACCGTG
TTGAAAAATGATTCGCCTTGGAAGAGGATCTACTTCTGTGAGCGACAGTT
CTATCACAAGGCACATCGTTTCAGTGAGTTGAACTCCATTCTCTTCCCGG
GCGATCCCATACCGAATGACTTACGAAAGGCTGCCGGGTTGCCACCGCAG
GAACACACAGAACTGGAAAGCGAAGTCGACTACGACAACGCCTACCATGA
ACCCGAACTCACCGCCCGCACAAAACGAAAGACGCGCAACGAAAAGCTAA
CGTCAGAACCAATACTACTGTGGTAG

Coding sequence (CDS) from alignment at NODE_388_length_27163_cov_4.403295:23003..23728+

>Gcaud9566.t1 ID=Gcaud9566.t1|Name=Gcaud9566.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=726bp|location=Sequence derived from alignment at NODE_388_length_27163_cov_4.403295:23003..23728+ (Gracilaria caudata M_176_S67 male)
ATGGTGAACCGCAAGCGCACCATCTCCGAGCTTCGCACCACCGAAGTGGT
CACGTCGGAGCCTGTGCTTGTCGGCGAAGGCAAATGGTCCCCGCGTCACA
AGCACTACGTGTATCCGGCAGTCGATTATCAGGGCACCCGCTTCCGCATC
GGTGATCATGTCGCCATGTACACCGGCGACAAGTCCGACGGCCGCGAGTG
GATTTGCGTGTTAGAAACTCTCTACAAGGACCCCGAAGACGGTTGTGCAA
AGTTCAAAGGCAGATGGTTCTGGTCCGTTCAAGACGTGAAGGAACATAAA
AAAGAAGATAGCGAAGATATGCGTCCAAGCAAATGCGAGAGCAATGAGCT
CATATGCTGTGATAACCGAGATACAAACCTGGTCGAATCCATTAGTAGAA
AGGCTTGCATATTGAGTTTCGATAATTTCGCACTTGTTAGAAGAACCGTG
TTGAAAAATGATTCGCCTTGGAAGAGGATCTACTTCTGTGAGCGACAGTT
CTATCACAAGGCACATCGTTTCAGTGAGTTGAACTCCATTCTCTTCCCGG
GCGATCCCATACCGAATGACTTACGAAAGGCTGCCGGGTTGCCACCGCAG
GAACACACAGAACTGGAAAGCGAAGTCGACTACGACAACGCCTACCATGA
ACCCGAACTCACCGCCCGCACAAAACGAAAGACGCGCAACGAAAAGCTAA
CGTCAGAACCAATACTACTGTGGTAG