Gcaud9561.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9561.t1
Unique NameGcaud9561.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length182
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_388_length_27163_cov_4.403295contigNODE_388_length_27163_cov_4.403295:9779..10568 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1121374.KB891590_gene1719
Max annot lvl1236|Gammaproteobacteria
Evalue1.24e-05
EggNOG OGs29R72@1|root,30C8E@2|Bacteria,1RE0P@1224|Proteobacteria,1S53D@1236|Gammaproteobacteria
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9561Gcaud9561Gracilaria caudata M_176_S67 malegeneNODE_388_length_27163_cov_4.403295 9779..10568 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9561.t1Gcaud9561.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_388_length_27163_cov_4.403295 9779..10568 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9561.t1.start1Gcaud9561.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_388_length_27163_cov_4.403295 9779..9781 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9561.t1.CDS1Gcaud9561.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_388_length_27163_cov_4.403295 9779..9892 +
Gcaud9561.t1.CDS2Gcaud9561.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_388_length_27163_cov_4.403295 9978..9989 +
Gcaud9561.t1.CDS3Gcaud9561.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_388_length_27163_cov_4.403295 10149..10568 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9561.t1.exon1Gcaud9561.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_388_length_27163_cov_4.403295 9779..9892 +
Gcaud9561.t1.exon2Gcaud9561.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_388_length_27163_cov_4.403295 9978..9989 +
Gcaud9561.t1.exon3Gcaud9561.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_388_length_27163_cov_4.403295 10149..10568 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9561.t1.intron1Gcaud9561.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_388_length_27163_cov_4.403295 9893..9977 +
Gcaud9561.t1.intron2Gcaud9561.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_388_length_27163_cov_4.403295 9990..10148 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9561.t1.stop1Gcaud9561.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_388_length_27163_cov_4.403295 10566..10568 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9561.t1 ID=Gcaud9561.t1|Name=Gcaud9561.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=182bp
MTHTVAHVAALFSVASRVVSCAVVCAPLRSTLCALRSSISRFEVIKNRVN
AETDIPFLRESTESTIIDTIIETLNPHIEPSLREICPAPYVDCIKIALTE
GVPIEERRERISIILRQQLARPLASRLNGKLDVSLVPESVEQKILTVFAN
KIINEFVEWTVAEIDERMGTSLQQSRDAAGI*
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spliced messenger RNA

>Gcaud9561.t1 ID=Gcaud9561.t1|Name=Gcaud9561.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=546bp|location=Sequence derived from alignment at NODE_388_length_27163_cov_4.403295:9779..10568+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACACACACCGTTGCTCACGTTGCCGCGCTTTTCTCCGTTGCGTCCCG
CGTCGTTTCGTGCGCCGTCGTTTGTGCGCCGTTGCGTTCCACTCTCTGCG
CGCTTCGCTCCAGTATTTCCAGATTTGAGGTGATCAAAAATCGCGTCAAT
GCCGAGACAGACATCCCTTTTCTCCGCGAATCCACCGAGTCCACTATTAT
CGACACCATAATTGAAACACTAAACCCCCACATCGAGCCCTCTCTCCGTG
AAATATGCCCAGCCCCCTACGTCGACTGCATCAAAATTGCCCTCACCGAA
GGCGTTCCAATCGAGGAACGTCGTGAGCGAATATCAATCATTCTGCGACA
ACAACTAGCTCGTCCGCTCGCCTCCCGGCTAAATGGCAAATTGGACGTCT
CTCTGGTGCCAGAAAGCGTGGAACAGAAGATCCTTACCGTTTTTGCCAAT
AAGATTATTAATGAGTTTGTTGAATGGACTGTTGCTGAGATTGATGAACG
TATGGGCACTTCGCTGCAACAAAGTCGTGACGCTGCTGGTATTTGA
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protein sequence of Gcaud9561.t1

>Gcaud9561.t1 ID=Gcaud9561.t1|Name=Gcaud9561.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=182bp
MTHTVAHVAALFSVASRVVSCAVVCAPLRSTLCALRSSISRFEVIKNRVN
AETDIPFLRESTESTIIDTIIETLNPHIEPSLREICPAPYVDCIKIALTE
GVPIEERRERISIILRQQLARPLASRLNGKLDVSLVPESVEQKILTVFAN
KIINEFVEWTVAEIDERMGTSLQQSRDAAGI*
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mRNA from alignment at NODE_388_length_27163_cov_4.403295:9779..10568+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9561.t1 ID=Gcaud9561.t1|Name=Gcaud9561.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=790bp|location=Sequence derived from alignment at NODE_388_length_27163_cov_4.403295:9779..10568+ (Gracilaria caudata M_176_S67 male)
ATGACACACACCGTTGCTCACGTTGCCGCGCTTTTCTCCGTTGCGTCCCG
CGTCGTTTCGTGCGCCGTCGTTTGTGCGCCGTTGCGTTCCACTCTCTGCG
CGCTTCGCTCCAGTGTGCGTTTGACATTCTGTGCCTCTGTGCGCGTGTCC
AACACGTGGCGTACGCGTCCGGTATCACTGACATGATGATCCTTGCCAGA
TTTCCAGATTTGTATGTTTAGACGTTTAGACCATAGCCGCAGACTCTCCA
CCCACTTACACGCACGTCTCCTTCACGGCTTCATAGTCATCATCTTCCAC
CATCCGAAAGCGAACAACTTCGCTCTGTTCCCTGCCCTCACCCTCTAAAA
TGCTTTCCGAAAACCAAAAGGAGGTGATCAAAAATCGCGTCAATGCCGAG
ACAGACATCCCTTTTCTCCGCGAATCCACCGAGTCCACTATTATCGACAC
CATAATTGAAACACTAAACCCCCACATCGAGCCCTCTCTCCGTGAAATAT
GCCCAGCCCCCTACGTCGACTGCATCAAAATTGCCCTCACCGAAGGCGTT
CCAATCGAGGAACGTCGTGAGCGAATATCAATCATTCTGCGACAACAACT
AGCTCGTCCGCTCGCCTCCCGGCTAAATGGCAAATTGGACGTCTCTCTGG
TGCCAGAAAGCGTGGAACAGAAGATCCTTACCGTTTTTGCCAATAAGATT
ATTAATGAGTTTGTTGAATGGACTGTTGCTGAGATTGATGAACGTATGGG
CACTTCGCTGCAACAAAGTCGTGACGCTGCTGGTATTTGA
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Coding sequence (CDS) from alignment at NODE_388_length_27163_cov_4.403295:9779..10568+

>Gcaud9561.t1 ID=Gcaud9561.t1|Name=Gcaud9561.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=546bp|location=Sequence derived from alignment at NODE_388_length_27163_cov_4.403295:9779..10568+ (Gracilaria caudata M_176_S67 male)
ATGACACACACCGTTGCTCACGTTGCCGCGCTTTTCTCCGTTGCGTCCCG
CGTCGTTTCGTGCGCCGTCGTTTGTGCGCCGTTGCGTTCCACTCTCTGCG
CGCTTCGCTCCAGTATTTCCAGATTTGAGGTGATCAAAAATCGCGTCAAT
GCCGAGACAGACATCCCTTTTCTCCGCGAATCCACCGAGTCCACTATTAT
CGACACCATAATTGAAACACTAAACCCCCACATCGAGCCCTCTCTCCGTG
AAATATGCCCAGCCCCCTACGTCGACTGCATCAAAATTGCCCTCACCGAA
GGCGTTCCAATCGAGGAACGTCGTGAGCGAATATCAATCATTCTGCGACA
ACAACTAGCTCGTCCGCTCGCCTCCCGGCTAAATGGCAAATTGGACGTCT
CTCTGGTGCCAGAAAGCGTGGAACAGAAGATCCTTACCGTTTTTGCCAAT
AAGATTATTAATGAGTTTGTTGAATGGACTGTTGCTGAGATTGATGAACG
TATGGGCACTTCGCTGCAACAAAGTCGTGACGCTGCTGGTATTTGA
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