Gcaud9512.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9512.t1
Unique Name	Gcaud9512.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	451

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_69_length_56878_cov_4.412084	contig	NODE_69_length_56878_cov_4.412084:33421..34773 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9512	Gcaud9512	Gracilaria caudata M_176_S67 male	gene	NODE_69_length_56878_cov_4.412084 33421..34773 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9512.t1.start1	Gcaud9512.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_69_length_56878_cov_4.412084 33421..33423 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9512.t1.CDS1	Gcaud9512.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_69_length_56878_cov_4.412084 33421..34773 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9512.t1.exon1	Gcaud9512.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_69_length_56878_cov_4.412084 33421..34773 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9512.t1.stop1	Gcaud9512.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_69_length_56878_cov_4.412084 34771..34773 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9512.t1	Gcaud9512.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_69_length_56878_cov_4.412084 33421..34773 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_69_length_56878_cov_4.412084:33421..34773+
coding sequence from alignment at NODE_69_length_56878_cov_4.412084:33421..34773+

mRNA sequence

>Gcaud9512.t1 ID=Gcaud9512.t1|Name=Gcaud9512.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=451bp
MSVLFHPADNSVLDLNPLSPSPPKDPTLSFLQSYLTYRTRPPFRPCPTTP
YTQYDSFLFTQLISQLSQLSSENVLDLICLFPPYSLKDHLHPILLSVKPL
LSRVVRSLRNRLGNDDLYFVADSLHILASLASANDAARSAVIEALSTRSQ
RADAADKVQAWLRDLSSKAEGELFPNGLTERQMCVGLASQLLDALLSLPQ
FERNGYVRLHSSDARVEATIARVAGVSPALARDALQKFDGADAAVAALLD
GWRPQIGKRAAKDERTNQTVDTHQVQRRIARDDARRQAEEEREAASRLQE
LAMQTDESRGGAESTTKGDMETVDTDANIDDDLPLEGGVSHYLARDDHES
LDIDFPPVSYNSGRGASSKGAASSSIPKGRQTGKRGGRHSNTSGQNVERN
RSTEPQNEQNYGSSRQVGGRGRGRGRGRGRGRGRGANHGRRARAVKKQGF
*

spliced messenger RNA

>Gcaud9512.t1 ID=Gcaud9512.t1|Name=Gcaud9512.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1353bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:33421..34773+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGTACTCTTCCACCCTGCTGACAACAGCGTTCTAGACCTCAACCC
GCTTTCCCCGTCACCTCCGAAAGACCCAACGCTTTCCTTCTTACAGTCGT
ATCTGACATACCGCACACGCCCTCCTTTCCGACCATGTCCCACCACGCCA
TACACTCAGTATGATTCTTTCCTATTCACTCAACTAATCTCTCAACTCTC
TCAACTGTCGTCCGAAAACGTTCTTGATCTTATATGTCTGTTTCCTCCAT
ACTCACTAAAAGATCACTTACACCCAATTCTGCTCTCTGTCAAACCCCTA
CTCAGTCGCGTCGTTCGATCTCTTCGCAACCGACTTGGAAACGATGATTT
ATACTTTGTTGCGGACAGTCTTCACATCTTGGCTTCTCTCGCTTCGGCCA
ACGATGCTGCTCGTTCCGCAGTAATTGAAGCCCTATCTACGCGTTCACAA
AGAGCTGATGCAGCAGACAAAGTACAAGCGTGGCTACGAGACTTATCCAG
CAAAGCTGAGGGTGAATTATTCCCAAATGGTTTAACAGAGCGACAGATGT
GTGTCGGATTAGCGTCACAGCTTCTCGACGCCTTGCTTTCGCTGCCACAG
TTTGAGCGTAATGGATACGTTCGTTTACATTCTTCTGACGCACGTGTAGA
AGCTACTATTGCTCGCGTTGCAGGCGTTTCGCCCGCTTTGGCTCGTGATG
CGTTGCAGAAGTTTGATGGTGCCGATGCTGCGGTTGCAGCACTGTTAGAC
GGTTGGCGACCACAAATTGGTAAACGAGCTGCCAAGGATGAAAGAACTAA
TCAAACTGTGGATACACATCAGGTGCAAAGGCGTATTGCGAGAGATGACG
CGAGAAGACAGGCCGAAGAAGAAAGAGAGGCTGCTTCGCGTCTTCAGGAG
CTCGCGATGCAGACAGACGAGAGCAGGGGGGGCGCTGAAAGTACTACGAA
AGGTGACATGGAAACTGTGGATACAGATGCGAATATAGACGATGACCTGC
CGCTTGAAGGTGGCGTATCTCATTATCTTGCGCGTGATGACCATGAATCA
CTAGATATTGATTTTCCGCCAGTATCATATAACAGCGGTCGTGGAGCTTC
TAGCAAAGGCGCTGCTTCCTCGAGCATACCGAAAGGTCGACAGACGGGCA
AACGGGGTGGAAGGCATTCAAACACAAGCGGACAAAACGTTGAACGAAAT
AGATCAACTGAGCCACAAAATGAGCAAAATTATGGAAGTTCTAGACAGGT
TGGTggaaggggtcgcggtcgtggaagagggcgtgggcggggacgaggtc
gaggCGCTAATCATGGACGAAGAGCGCGAGCTGTCAAGAAGCAGGGATTC
TGA

protein sequence of Gcaud9512.t1

>Gcaud9512.t1 ID=Gcaud9512.t1|Name=Gcaud9512.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=451bp
MSVLFHPADNSVLDLNPLSPSPPKDPTLSFLQSYLTYRTRPPFRPCPTTP
YTQYDSFLFTQLISQLSQLSSENVLDLICLFPPYSLKDHLHPILLSVKPL
LSRVVRSLRNRLGNDDLYFVADSLHILASLASANDAARSAVIEALSTRSQ
RADAADKVQAWLRDLSSKAEGELFPNGLTERQMCVGLASQLLDALLSLPQ
FERNGYVRLHSSDARVEATIARVAGVSPALARDALQKFDGADAAVAALLD
GWRPQIGKRAAKDERTNQTVDTHQVQRRIARDDARRQAEEEREAASRLQE
LAMQTDESRGGAESTTKGDMETVDTDANIDDDLPLEGGVSHYLARDDHES
LDIDFPPVSYNSGRGASSKGAASSSIPKGRQTGKRGGRHSNTSGQNVERN
RSTEPQNEQNYGSSRQVGGRGRGRGRGRGRGRGRGANHGRRARAVKKQGF
*

mRNA from alignment at NODE_69_length_56878_cov_4.412084:33421..34773+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9512.t1 ID=Gcaud9512.t1|Name=Gcaud9512.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1353bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:33421..34773+ (Gracilaria caudata M_176_S67 male)
ATGAGTGTACTCTTCCACCCTGCTGACAACAGCGTTCTAGACCTCAACCC
GCTTTCCCCGTCACCTCCGAAAGACCCAACGCTTTCCTTCTTACAGTCGT
ATCTGACATACCGCACACGCCCTCCTTTCCGACCATGTCCCACCACGCCA
TACACTCAGTATGATTCTTTCCTATTCACTCAACTAATCTCTCAACTCTC
TCAACTGTCGTCCGAAAACGTTCTTGATCTTATATGTCTGTTTCCTCCAT
ACTCACTAAAAGATCACTTACACCCAATTCTGCTCTCTGTCAAACCCCTA
CTCAGTCGCGTCGTTCGATCTCTTCGCAACCGACTTGGAAACGATGATTT
ATACTTTGTTGCGGACAGTCTTCACATCTTGGCTTCTCTCGCTTCGGCCA
ACGATGCTGCTCGTTCCGCAGTAATTGAAGCCCTATCTACGCGTTCACAA
AGAGCTGATGCAGCAGACAAAGTACAAGCGTGGCTACGAGACTTATCCAG
CAAAGCTGAGGGTGAATTATTCCCAAATGGTTTAACAGAGCGACAGATGT
GTGTCGGATTAGCGTCACAGCTTCTCGACGCCTTGCTTTCGCTGCCACAG
TTTGAGCGTAATGGATACGTTCGTTTACATTCTTCTGACGCACGTGTAGA
AGCTACTATTGCTCGCGTTGCAGGCGTTTCGCCCGCTTTGGCTCGTGATG
CGTTGCAGAAGTTTGATGGTGCCGATGCTGCGGTTGCAGCACTGTTAGAC
GGTTGGCGACCACAAATTGGTAAACGAGCTGCCAAGGATGAAAGAACTAA
TCAAACTGTGGATACACATCAGGTGCAAAGGCGTATTGCGAGAGATGACG
CGAGAAGACAGGCCGAAGAAGAAAGAGAGGCTGCTTCGCGTCTTCAGGAG
CTCGCGATGCAGACAGACGAGAGCAGGGGGGGCGCTGAAAGTACTACGAA
AGGTGACATGGAAACTGTGGATACAGATGCGAATATAGACGATGACCTGC
CGCTTGAAGGTGGCGTATCTCATTATCTTGCGCGTGATGACCATGAATCA
CTAGATATTGATTTTCCGCCAGTATCATATAACAGCGGTCGTGGAGCTTC
TAGCAAAGGCGCTGCTTCCTCGAGCATACCGAAAGGTCGACAGACGGGCA
AACGGGGTGGAAGGCATTCAAACACAAGCGGACAAAACGTTGAACGAAAT
AGATCAACTGAGCCACAAAATGAGCAAAATTATGGAAGTTCTAGACAGGT
TGGTggaaggggtcgcggtcgtggaagagggcgtgggcggggacgaggtc
gaggCGCTAATCATGGACGAAGAGCGCGAGCTGTCAAGAAGCAGGGATTC
TGA

Coding sequence (CDS) from alignment at NODE_69_length_56878_cov_4.412084:33421..34773+

>Gcaud9512.t1 ID=Gcaud9512.t1|Name=Gcaud9512.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1353bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:33421..34773+ (Gracilaria caudata M_176_S67 male)
ATGAGTGTACTCTTCCACCCTGCTGACAACAGCGTTCTAGACCTCAACCC
GCTTTCCCCGTCACCTCCGAAAGACCCAACGCTTTCCTTCTTACAGTCGT
ATCTGACATACCGCACACGCCCTCCTTTCCGACCATGTCCCACCACGCCA
TACACTCAGTATGATTCTTTCCTATTCACTCAACTAATCTCTCAACTCTC
TCAACTGTCGTCCGAAAACGTTCTTGATCTTATATGTCTGTTTCCTCCAT
ACTCACTAAAAGATCACTTACACCCAATTCTGCTCTCTGTCAAACCCCTA
CTCAGTCGCGTCGTTCGATCTCTTCGCAACCGACTTGGAAACGATGATTT
ATACTTTGTTGCGGACAGTCTTCACATCTTGGCTTCTCTCGCTTCGGCCA
ACGATGCTGCTCGTTCCGCAGTAATTGAAGCCCTATCTACGCGTTCACAA
AGAGCTGATGCAGCAGACAAAGTACAAGCGTGGCTACGAGACTTATCCAG
CAAAGCTGAGGGTGAATTATTCCCAAATGGTTTAACAGAGCGACAGATGT
GTGTCGGATTAGCGTCACAGCTTCTCGACGCCTTGCTTTCGCTGCCACAG
TTTGAGCGTAATGGATACGTTCGTTTACATTCTTCTGACGCACGTGTAGA
AGCTACTATTGCTCGCGTTGCAGGCGTTTCGCCCGCTTTGGCTCGTGATG
CGTTGCAGAAGTTTGATGGTGCCGATGCTGCGGTTGCAGCACTGTTAGAC
GGTTGGCGACCACAAATTGGTAAACGAGCTGCCAAGGATGAAAGAACTAA
TCAAACTGTGGATACACATCAGGTGCAAAGGCGTATTGCGAGAGATGACG
CGAGAAGACAGGCCGAAGAAGAAAGAGAGGCTGCTTCGCGTCTTCAGGAG
CTCGCGATGCAGACAGACGAGAGCAGGGGGGGCGCTGAAAGTACTACGAA
AGGTGACATGGAAACTGTGGATACAGATGCGAATATAGACGATGACCTGC
CGCTTGAAGGTGGCGTATCTCATTATCTTGCGCGTGATGACCATGAATCA
CTAGATATTGATTTTCCGCCAGTATCATATAACAGCGGTCGTGGAGCTTC
TAGCAAAGGCGCTGCTTCCTCGAGCATACCGAAAGGTCGACAGACGGGCA
AACGGGGTGGAAGGCATTCAAACACAAGCGGACAAAACGTTGAACGAAAT
AGATCAACTGAGCCACAAAATGAGCAAAATTATGGAAGTTCTAGACAGGT
TGGTggaaggggtcgcggtcgtggaagagggcgtgggcggggacgaggtc
gaggCGCTAATCATGGACGAAGAGCGCGAGCTGTCAAGAAGCAGGGATTC
TGA