Gcaud9508.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9508.t1
Unique Name	Gcaud9508.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	501

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_69_length_56878_cov_4.412084	contig	NODE_69_length_56878_cov_4.412084:22589..24091 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	71139.XP_010056322.1
PFAMs	Methyltransf_29
Max annot lvl	35493\|Streptophyta
GOs	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0012505,GO:0016740,GO:0016741,GO:0031410,GO:0031982,GO:0031984,GO:0032259,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0097708,GO:0098791
Evalue	1.35e-15
EggNOG OGs	28I6U@1\|root,2QTJJ@2759\|Eukaryota,37M9Q@33090\|Viridiplantae,3GB2X@35493\|Streptophyta
Description	methyltransferase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9508	Gcaud9508	Gracilaria caudata M_176_S67 male	gene	NODE_69_length_56878_cov_4.412084 22589..24091 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9508.t1.stop1	Gcaud9508.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_69_length_56878_cov_4.412084 22589..22591 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9508.t1.CDS1	Gcaud9508.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_69_length_56878_cov_4.412084 22589..24091 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9508.t1.exon1	Gcaud9508.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_69_length_56878_cov_4.412084 22589..24091 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9508.t1.start1	Gcaud9508.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_69_length_56878_cov_4.412084 24089..24091 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9508.t1	Gcaud9508.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_69_length_56878_cov_4.412084 22589..24091 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_69_length_56878_cov_4.412084:22589..24091-
coding sequence from alignment at NODE_69_length_56878_cov_4.412084:22589..24091-

mRNA sequence

>Gcaud9508.t1 ID=Gcaud9508.t1|Name=Gcaud9508.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=501bp
MKGTRRLLRLARIALVVFSLLFLFFYGFEQRPLPRISECSDPFYVRVPNT
LNTPHTPTKWPCLVRPPFNYTPPLPRPRSFWRTPLANVGELDTNNSEYRL
HLANQRWARIEAHEINIREEGGTSGRSFANNFEYVKFLLKQFKPIKRCAK
NAPYVMLDMGAGIGSVAAALLDERGGGGAVKAVSYVWPDDYLRLQTIISD
RGLPSFLANFTGSLPFPSSTFDVVHCKWCWHHNAGYDTWLREVNRLLVPG
GYFVFTFAPEGSELLKHPAWEEALQRQPFKCKRVHRIITMCQKHRVQIKT
KKGGDGFRKATYCPKKVKRYIAKSEKSHEDNLAQIDKERLTVTAMVKQLS
QNSTTRVLSVNCPEAAQCAEMDVILQSSVLHLNQASQNLVVKGILSLGGL
AMLHNWKNNVPVYPRSFDVVNIGCDPHSKYLLKQHEFWFELHRVLRPGGF
AVLTRSFCRWYFEEKNSLNPYGFETEKISKHIFVARRREMYDLSSVFLKA
*

spliced messenger RNA

>Gcaud9508.t1 ID=Gcaud9508.t1|Name=Gcaud9508.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1503bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:22589..24091- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGGTACGAGAAGACTATTACGCCTTGCGAGAATTGCGTTGGTAGT
CTTTTCTTTACTCTTCTTATTCTTTTACGGCTTCGAACAGCGCCCATTAC
CCAGGATATCTGAATGTTCCGATCCGTTCTACGTGAGAGTACCAAACACT
CTCAATACGCCGCACACTCCGACAAAATGGCCATGTTTAGTTAGACCTCC
GTTCAATTACACTCCACCGCTTCCCCGTCCTCGCTCGTTTTGGCGTACCC
CGCTCGCCAATGTTGGTGAGCTTGATACAAACAACTCGGAATATCGGCTT
CACCTGGCGAACCAAAGATGGGCACGTATAGAAGCACATGAGATCAACAT
ACGCGAAGAGGGTGGGACTTCTGGTAGGTCTTTCGCAAACAACTTTGAAT
ATGTCAAATTCTTGCTTAAGCAGTTCAAACCCATAAAACGCTGTGCGAAG
AATGCTCCCTACGTCATGTTGGACATGGGAGCCGGTATCGGATCTGTTGC
TGCTGCTCTACTCGATGAACGGGGAGGTGGTGGGGCTGTCAAAGCCGTTT
CTTATGTTTGGCCGGATGATTACCTCAGACTACAGACGATTATATCTGAT
AGAGGGCTTCCATCTTTCCTCGCCAACTTCACAGGATCATTGCCATTTCC
CTCATCAACTTTCGATGTCGTACACTGCAAATGGTGTTGGCATCATAACG
CCGGATACGATACATGGTTGAGGGAAGTGAACCGCCTATTGGTACCCGGA
GGGTATTTCGTTTTTACCTTTGCCCCAGAAGGATCAGAGTTGCTAAAGCA
CCCAGCTTGGGAGGAGGCATTGCAGAGACAACCGTTCAAATGCAAACGAG
TTCATAGAATTATTACAATGTGTCAAAAGCATAGGGTACAGATCAAGACG
AAGAAGGGCGGGGATGGTTTTCGGAAAGCTACTTACTGTCCCAAGAAAGT
GAAGAGATACATAGCGAAATCAGAAAAGAGCCATGAAGATAACCTTGCGC
AGATAGATAAGGAGCGGTTGACAGTGACTGCAATGGTGAAGCAGCTGTCG
CAGAATAGCACCACAAGAGTTCTAAGCGTTAACTGCCCAGAGGCAGCACA
ATGTGCAGAAATGGATGTCATTCTCCAGAGCAGTGTGCTACATTTGAATC
AAGCGTCTCAGAATTTGGTCGTGAAAGGAATACTCAGCCTTGGGGGTCTG
GCAATGTTGCACAACTGGAAGAATAATGTTCCAGTGTACCCTCGATCTTT
CGATGTTGTCAACATCGGTTGTGACCCACACTCGAAGTATCTCCTTAAAC
AACACGAGTTCTGGTTTGAACTTCATCGAGTGCTTCGACCTGGTGGTTTC
GCGGTCCTGACGAGAAGTTTTTGCCGGTGGTACTTCGAAGAAAAGAATTC
GTTGAACCCTTATGGATTTGAAACAGAGAAGATTTCGAAACACATCTTTG
TAGCAAGAAGACGTGAAATGTATGATTTATCTAGCGTGTTTCTGAAGGCG
TGA

protein sequence of Gcaud9508.t1

>Gcaud9508.t1 ID=Gcaud9508.t1|Name=Gcaud9508.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=501bp
MKGTRRLLRLARIALVVFSLLFLFFYGFEQRPLPRISECSDPFYVRVPNT
LNTPHTPTKWPCLVRPPFNYTPPLPRPRSFWRTPLANVGELDTNNSEYRL
HLANQRWARIEAHEINIREEGGTSGRSFANNFEYVKFLLKQFKPIKRCAK
NAPYVMLDMGAGIGSVAAALLDERGGGGAVKAVSYVWPDDYLRLQTIISD
RGLPSFLANFTGSLPFPSSTFDVVHCKWCWHHNAGYDTWLREVNRLLVPG
GYFVFTFAPEGSELLKHPAWEEALQRQPFKCKRVHRIITMCQKHRVQIKT
KKGGDGFRKATYCPKKVKRYIAKSEKSHEDNLAQIDKERLTVTAMVKQLS
QNSTTRVLSVNCPEAAQCAEMDVILQSSVLHLNQASQNLVVKGILSLGGL
AMLHNWKNNVPVYPRSFDVVNIGCDPHSKYLLKQHEFWFELHRVLRPGGF
AVLTRSFCRWYFEEKNSLNPYGFETEKISKHIFVARRREMYDLSSVFLKA
*

mRNA from alignment at NODE_69_length_56878_cov_4.412084:22589..24091-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9508.t1 ID=Gcaud9508.t1|Name=Gcaud9508.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1503bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:22589..24091- (Gracilaria caudata M_176_S67 male)
ATGAAGGGTACGAGAAGACTATTACGCCTTGCGAGAATTGCGTTGGTAGT
CTTTTCTTTACTCTTCTTATTCTTTTACGGCTTCGAACAGCGCCCATTAC
CCAGGATATCTGAATGTTCCGATCCGTTCTACGTGAGAGTACCAAACACT
CTCAATACGCCGCACACTCCGACAAAATGGCCATGTTTAGTTAGACCTCC
GTTCAATTACACTCCACCGCTTCCCCGTCCTCGCTCGTTTTGGCGTACCC
CGCTCGCCAATGTTGGTGAGCTTGATACAAACAACTCGGAATATCGGCTT
CACCTGGCGAACCAAAGATGGGCACGTATAGAAGCACATGAGATCAACAT
ACGCGAAGAGGGTGGGACTTCTGGTAGGTCTTTCGCAAACAACTTTGAAT
ATGTCAAATTCTTGCTTAAGCAGTTCAAACCCATAAAACGCTGTGCGAAG
AATGCTCCCTACGTCATGTTGGACATGGGAGCCGGTATCGGATCTGTTGC
TGCTGCTCTACTCGATGAACGGGGAGGTGGTGGGGCTGTCAAAGCCGTTT
CTTATGTTTGGCCGGATGATTACCTCAGACTACAGACGATTATATCTGAT
AGAGGGCTTCCATCTTTCCTCGCCAACTTCACAGGATCATTGCCATTTCC
CTCATCAACTTTCGATGTCGTACACTGCAAATGGTGTTGGCATCATAACG
CCGGATACGATACATGGTTGAGGGAAGTGAACCGCCTATTGGTACCCGGA
GGGTATTTCGTTTTTACCTTTGCCCCAGAAGGATCAGAGTTGCTAAAGCA
CCCAGCTTGGGAGGAGGCATTGCAGAGACAACCGTTCAAATGCAAACGAG
TTCATAGAATTATTACAATGTGTCAAAAGCATAGGGTACAGATCAAGACG
AAGAAGGGCGGGGATGGTTTTCGGAAAGCTACTTACTGTCCCAAGAAAGT
GAAGAGATACATAGCGAAATCAGAAAAGAGCCATGAAGATAACCTTGCGC
AGATAGATAAGGAGCGGTTGACAGTGACTGCAATGGTGAAGCAGCTGTCG
CAGAATAGCACCACAAGAGTTCTAAGCGTTAACTGCCCAGAGGCAGCACA
ATGTGCAGAAATGGATGTCATTCTCCAGAGCAGTGTGCTACATTTGAATC
AAGCGTCTCAGAATTTGGTCGTGAAAGGAATACTCAGCCTTGGGGGTCTG
GCAATGTTGCACAACTGGAAGAATAATGTTCCAGTGTACCCTCGATCTTT
CGATGTTGTCAACATCGGTTGTGACCCACACTCGAAGTATCTCCTTAAAC
AACACGAGTTCTGGTTTGAACTTCATCGAGTGCTTCGACCTGGTGGTTTC
GCGGTCCTGACGAGAAGTTTTTGCCGGTGGTACTTCGAAGAAAAGAATTC
GTTGAACCCTTATGGATTTGAAACAGAGAAGATTTCGAAACACATCTTTG
TAGCAAGAAGACGTGAAATGTATGATTTATCTAGCGTGTTTCTGAAGGCG
TGA

Coding sequence (CDS) from alignment at NODE_69_length_56878_cov_4.412084:22589..24091-

>Gcaud9508.t1 ID=Gcaud9508.t1|Name=Gcaud9508.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1503bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:22589..24091- (Gracilaria caudata M_176_S67 male)
ATGAAGGGTACGAGAAGACTATTACGCCTTGCGAGAATTGCGTTGGTAGT
CTTTTCTTTACTCTTCTTATTCTTTTACGGCTTCGAACAGCGCCCATTAC
CCAGGATATCTGAATGTTCCGATCCGTTCTACGTGAGAGTACCAAACACT
CTCAATACGCCGCACACTCCGACAAAATGGCCATGTTTAGTTAGACCTCC
GTTCAATTACACTCCACCGCTTCCCCGTCCTCGCTCGTTTTGGCGTACCC
CGCTCGCCAATGTTGGTGAGCTTGATACAAACAACTCGGAATATCGGCTT
CACCTGGCGAACCAAAGATGGGCACGTATAGAAGCACATGAGATCAACAT
ACGCGAAGAGGGTGGGACTTCTGGTAGGTCTTTCGCAAACAACTTTGAAT
ATGTCAAATTCTTGCTTAAGCAGTTCAAACCCATAAAACGCTGTGCGAAG
AATGCTCCCTACGTCATGTTGGACATGGGAGCCGGTATCGGATCTGTTGC
TGCTGCTCTACTCGATGAACGGGGAGGTGGTGGGGCTGTCAAAGCCGTTT
CTTATGTTTGGCCGGATGATTACCTCAGACTACAGACGATTATATCTGAT
AGAGGGCTTCCATCTTTCCTCGCCAACTTCACAGGATCATTGCCATTTCC
CTCATCAACTTTCGATGTCGTACACTGCAAATGGTGTTGGCATCATAACG
CCGGATACGATACATGGTTGAGGGAAGTGAACCGCCTATTGGTACCCGGA
GGGTATTTCGTTTTTACCTTTGCCCCAGAAGGATCAGAGTTGCTAAAGCA
CCCAGCTTGGGAGGAGGCATTGCAGAGACAACCGTTCAAATGCAAACGAG
TTCATAGAATTATTACAATGTGTCAAAAGCATAGGGTACAGATCAAGACG
AAGAAGGGCGGGGATGGTTTTCGGAAAGCTACTTACTGTCCCAAGAAAGT
GAAGAGATACATAGCGAAATCAGAAAAGAGCCATGAAGATAACCTTGCGC
AGATAGATAAGGAGCGGTTGACAGTGACTGCAATGGTGAAGCAGCTGTCG
CAGAATAGCACCACAAGAGTTCTAAGCGTTAACTGCCCAGAGGCAGCACA
ATGTGCAGAAATGGATGTCATTCTCCAGAGCAGTGTGCTACATTTGAATC
AAGCGTCTCAGAATTTGGTCGTGAAAGGAATACTCAGCCTTGGGGGTCTG
GCAATGTTGCACAACTGGAAGAATAATGTTCCAGTGTACCCTCGATCTTT
CGATGTTGTCAACATCGGTTGTGACCCACACTCGAAGTATCTCCTTAAAC
AACACGAGTTCTGGTTTGAACTTCATCGAGTGCTTCGACCTGGTGGTTTC
GCGGTCCTGACGAGAAGTTTTTGCCGGTGGTACTTCGAAGAAAAGAATTC
GTTGAACCCTTATGGATTTGAAACAGAGAAGATTTCGAAACACATCTTTG
TAGCAAGAAGACGTGAAATGTATGATTTATCTAGCGTGTTTCTGAAGGCG
TGA