Gcaud9506.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9506.t1
Unique Name	Gcaud9506.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	347

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_69_length_56878_cov_4.412084	contig	NODE_69_length_56878_cov_4.412084:19765..20805 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3218.PP1S68_167V6.1
PFAMs	CMAS
Max annot lvl	35493\|Streptophyta
Evalue	1.91e-127
EggNOG OGs	COG2230@1\|root,2QQW3@2759\|Eukaryota,37PQP@33090\|Viridiplantae,3G82F@35493\|Streptophyta
Description	(S)-coclaurine N-methyltransferase-like
COG category	M

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9506	Gcaud9506	Gracilaria caudata M_176_S67 male	gene	NODE_69_length_56878_cov_4.412084 19765..20805 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9506.t1.stop1	Gcaud9506.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_69_length_56878_cov_4.412084 19765..19767 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9506.t1.CDS1	Gcaud9506.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_69_length_56878_cov_4.412084 19765..20805 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9506.t1.exon1	Gcaud9506.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_69_length_56878_cov_4.412084 19765..20805 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9506.t1.start1	Gcaud9506.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_69_length_56878_cov_4.412084 20803..20805 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9506.t1	Gcaud9506.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_69_length_56878_cov_4.412084 19765..20805 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_69_length_56878_cov_4.412084:19765..20805-
coding sequence from alignment at NODE_69_length_56878_cov_4.412084:19765..20805-

mRNA sequence

>Gcaud9506.t1 ID=Gcaud9506.t1|Name=Gcaud9506.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=347bp
MQIAEALLERNATPDWITRIGIRKLLAERLVEEGSSTIEEEMRHKMEMIR
LLGSNEIAIKQEKANEQHYEVPTEIFQYTLGKRMKYSSCYYESADASLNA
AEESMLRLYCQRAGLKDGMSVLDLGCGWGSLTLYIAENYPNCKIRGLSNS
WTQRKFIEEEARKKGYKNVTIITADISKIDHVEGCGTFDMIFSIEMFEHM
KNYGELLKKMSSWMHKDSRLFIHIFCHIKYIYNFETEGATNWMGRYFFTG
GTMASDDVLHYFQDHVKVVERWRVDGRHYAQTSEHWLQNFDRNIEKIRPY
LRSTYGGEATKWEAYWRTFYLAVAELFGYNNGQEWHVAHYLMTKRN*

spliced messenger RNA

>Gcaud9506.t1 ID=Gcaud9506.t1|Name=Gcaud9506.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1041bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:19765..20805- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAATAGCAGAAGCTCTGCTAGAGCGCAACGCAACTCCAGATTGGAT
AACACGGATTGGAATTCGAAAGCTTTTAGCTGAACGTCTGGTTGAAGAAG
GTAGTTCCACAATCGAGGAAGAAATGAGACACAAGATGGAGATGATCCGG
TTATTGGGCTCGAATGAAATTGCGATAAAACAAGAAAAGGCCAATGAACA
ACATTACGAAGTGCCGACAGAAATCTTTCAATACACTCTTGGAAAGCGAA
TGAAATACTCTTCATGTTACTACGAATCAGCGGATGCAAGTTTGAACGCT
GCGGAAGAAAGTATGTTGCGATTGTATTGTCAACGGGCTGGGTTGAAAGA
TGGTATGAGTGTGTTAGATCTCGGGTGTGGATGGGGAAGTCTCACACTTT
ACATTGCAGAGAACTATCCAAACTGCAAGATTCGGGGTCTCTCCAACAGT
TGGACGCAGCGAAAGTTCATTGAGGAAGAAGCGCGAAAGAAAGGGTATAA
GAACGTTACAATCATCACTGCAGACATATCAAAGATTGATCATGTGGAAG
GTTGTGGCACATTCGATATGATATTCTCCATCGAAATGTTCGAACATATG
AAAAACTATGGAGAATTGCTGAAGAAAATGTCAAGCTGGATGCACAAGGA
CAGCAGACTGTTCATTCATATCTTCTGTCACATCAAATACATCTACAATT
TCGAGACAGAAGGCGCTACAAATTGGATGGGAAGATACTTCTTCACGGGA
GGAACAATGGCAAGCGACGATGTTCTCCACTACTTTCAGGACCACGTGAA
AGTGGTGGAAAGATGGCGTGTGGATGGTAGACATTATGCACAAACTTCGG
AACACTGGCTTCAAAACTTCGACCGGAACATCGAGAAGATCCGCCCGTAC
TTGCGAAGCACGTACGGAGGGGAAGCGACGAAGTGGGAGGCGTACTGGAG
AACGTTCTACCTGGCTGTTGCCGAACTGTTTGGCTACAACAACGGACAAG
AATGGCACGTGGCGCACTACCTGATGACCAAGCGTAACTGA

protein sequence of Gcaud9506.t1

>Gcaud9506.t1 ID=Gcaud9506.t1|Name=Gcaud9506.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=347bp
MQIAEALLERNATPDWITRIGIRKLLAERLVEEGSSTIEEEMRHKMEMIR
LLGSNEIAIKQEKANEQHYEVPTEIFQYTLGKRMKYSSCYYESADASLNA
AEESMLRLYCQRAGLKDGMSVLDLGCGWGSLTLYIAENYPNCKIRGLSNS
WTQRKFIEEEARKKGYKNVTIITADISKIDHVEGCGTFDMIFSIEMFEHM
KNYGELLKKMSSWMHKDSRLFIHIFCHIKYIYNFETEGATNWMGRYFFTG
GTMASDDVLHYFQDHVKVVERWRVDGRHYAQTSEHWLQNFDRNIEKIRPY
LRSTYGGEATKWEAYWRTFYLAVAELFGYNNGQEWHVAHYLMTKRN*

mRNA from alignment at NODE_69_length_56878_cov_4.412084:19765..20805-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9506.t1 ID=Gcaud9506.t1|Name=Gcaud9506.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1041bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:19765..20805- (Gracilaria caudata M_176_S67 male)
ATGCAAATAGCAGAAGCTCTGCTAGAGCGCAACGCAACTCCAGATTGGAT
AACACGGATTGGAATTCGAAAGCTTTTAGCTGAACGTCTGGTTGAAGAAG
GTAGTTCCACAATCGAGGAAGAAATGAGACACAAGATGGAGATGATCCGG
TTATTGGGCTCGAATGAAATTGCGATAAAACAAGAAAAGGCCAATGAACA
ACATTACGAAGTGCCGACAGAAATCTTTCAATACACTCTTGGAAAGCGAA
TGAAATACTCTTCATGTTACTACGAATCAGCGGATGCAAGTTTGAACGCT
GCGGAAGAAAGTATGTTGCGATTGTATTGTCAACGGGCTGGGTTGAAAGA
TGGTATGAGTGTGTTAGATCTCGGGTGTGGATGGGGAAGTCTCACACTTT
ACATTGCAGAGAACTATCCAAACTGCAAGATTCGGGGTCTCTCCAACAGT
TGGACGCAGCGAAAGTTCATTGAGGAAGAAGCGCGAAAGAAAGGGTATAA
GAACGTTACAATCATCACTGCAGACATATCAAAGATTGATCATGTGGAAG
GTTGTGGCACATTCGATATGATATTCTCCATCGAAATGTTCGAACATATG
AAAAACTATGGAGAATTGCTGAAGAAAATGTCAAGCTGGATGCACAAGGA
CAGCAGACTGTTCATTCATATCTTCTGTCACATCAAATACATCTACAATT
TCGAGACAGAAGGCGCTACAAATTGGATGGGAAGATACTTCTTCACGGGA
GGAACAATGGCAAGCGACGATGTTCTCCACTACTTTCAGGACCACGTGAA
AGTGGTGGAAAGATGGCGTGTGGATGGTAGACATTATGCACAAACTTCGG
AACACTGGCTTCAAAACTTCGACCGGAACATCGAGAAGATCCGCCCGTAC
TTGCGAAGCACGTACGGAGGGGAAGCGACGAAGTGGGAGGCGTACTGGAG
AACGTTCTACCTGGCTGTTGCCGAACTGTTTGGCTACAACAACGGACAAG
AATGGCACGTGGCGCACTACCTGATGACCAAGCGTAACTGA

Coding sequence (CDS) from alignment at NODE_69_length_56878_cov_4.412084:19765..20805-

>Gcaud9506.t1 ID=Gcaud9506.t1|Name=Gcaud9506.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1041bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:19765..20805- (Gracilaria caudata M_176_S67 male)
ATGCAAATAGCAGAAGCTCTGCTAGAGCGCAACGCAACTCCAGATTGGAT
AACACGGATTGGAATTCGAAAGCTTTTAGCTGAACGTCTGGTTGAAGAAG
GTAGTTCCACAATCGAGGAAGAAATGAGACACAAGATGGAGATGATCCGG
TTATTGGGCTCGAATGAAATTGCGATAAAACAAGAAAAGGCCAATGAACA
ACATTACGAAGTGCCGACAGAAATCTTTCAATACACTCTTGGAAAGCGAA
TGAAATACTCTTCATGTTACTACGAATCAGCGGATGCAAGTTTGAACGCT
GCGGAAGAAAGTATGTTGCGATTGTATTGTCAACGGGCTGGGTTGAAAGA
TGGTATGAGTGTGTTAGATCTCGGGTGTGGATGGGGAAGTCTCACACTTT
ACATTGCAGAGAACTATCCAAACTGCAAGATTCGGGGTCTCTCCAACAGT
TGGACGCAGCGAAAGTTCATTGAGGAAGAAGCGCGAAAGAAAGGGTATAA
GAACGTTACAATCATCACTGCAGACATATCAAAGATTGATCATGTGGAAG
GTTGTGGCACATTCGATATGATATTCTCCATCGAAATGTTCGAACATATG
AAAAACTATGGAGAATTGCTGAAGAAAATGTCAAGCTGGATGCACAAGGA
CAGCAGACTGTTCATTCATATCTTCTGTCACATCAAATACATCTACAATT
TCGAGACAGAAGGCGCTACAAATTGGATGGGAAGATACTTCTTCACGGGA
GGAACAATGGCAAGCGACGATGTTCTCCACTACTTTCAGGACCACGTGAA
AGTGGTGGAAAGATGGCGTGTGGATGGTAGACATTATGCACAAACTTCGG
AACACTGGCTTCAAAACTTCGACCGGAACATCGAGAAGATCCGCCCGTAC
TTGCGAAGCACGTACGGAGGGGAAGCGACGAAGTGGGAGGCGTACTGGAG
AACGTTCTACCTGGCTGTTGCCGAACTGTTTGGCTACAACAACGGACAAG
AATGGCACGTGGCGCACTACCTGATGACCAAGCGTAACTGA