Gcaud9503.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9503.t2
Unique NameGcaud9503.t2
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length134
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_69_length_56878_cov_4.412084contigNODE_69_length_56878_cov_4.412084:15675..16437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4081.Solyc10g018060.1.1
PFAMsC2
Max annot lvl35493|Streptophyta
Evalue8.04e-06
EggNOG OGsKOG1030@1|root,KOG1030@2759|Eukaryota,37UIN@33090|Viridiplantae,3GIY4@35493|Streptophyta,44SUT@71274|asterids
DescriptionProtein kinase C conserved region 2 (CalB)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9503Gcaud9503Gracilaria caudata M_176_S67 malegeneNODE_69_length_56878_cov_4.412084 15675..16437 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9503.t2Gcaud9503.t2Gracilaria caudata M_176_S67 malepolypeptideNODE_69_length_56878_cov_4.412084 15675..16437 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9503.t2.start1Gcaud9503.t2.start1Gracilaria caudata M_176_S67 malestart_codonNODE_69_length_56878_cov_4.412084 15675..15677 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9503.t2.CDS1Gcaud9503.t2.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_69_length_56878_cov_4.412084 15675..15764 +
Gcaud9503.t2.CDS2Gcaud9503.t2.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_69_length_56878_cov_4.412084 15843..15957 +
Gcaud9503.t2.CDS3Gcaud9503.t2.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_69_length_56878_cov_4.412084 16060..16063 +
Gcaud9503.t2.CDS4Gcaud9503.t2.CDS4Gracilaria caudata M_176_S67 maleCDSNODE_69_length_56878_cov_4.412084 16162..16307 +
Gcaud9503.t2.CDS5Gcaud9503.t2.CDS5Gracilaria caudata M_176_S67 maleCDSNODE_69_length_56878_cov_4.412084 16391..16437 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9503.t2.exon1Gcaud9503.t2.exon1Gracilaria caudata M_176_S67 maleexonNODE_69_length_56878_cov_4.412084 15675..15764 +
Gcaud9503.t2.exon2Gcaud9503.t2.exon2Gracilaria caudata M_176_S67 maleexonNODE_69_length_56878_cov_4.412084 15843..15957 +
Gcaud9503.t2.exon3Gcaud9503.t2.exon3Gracilaria caudata M_176_S67 maleexonNODE_69_length_56878_cov_4.412084 16060..16063 +
Gcaud9503.t2.exon4Gcaud9503.t2.exon4Gracilaria caudata M_176_S67 maleexonNODE_69_length_56878_cov_4.412084 16162..16307 +
Gcaud9503.t2.exon5Gcaud9503.t2.exon5Gracilaria caudata M_176_S67 maleexonNODE_69_length_56878_cov_4.412084 16391..16437 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9503.t2.intron1Gcaud9503.t2.intron1Gracilaria caudata M_176_S67 maleintronNODE_69_length_56878_cov_4.412084 15765..15842 +
Gcaud9503.t2.intron2Gcaud9503.t2.intron2Gracilaria caudata M_176_S67 maleintronNODE_69_length_56878_cov_4.412084 15958..16059 +
Gcaud9503.t2.intron3Gcaud9503.t2.intron3Gracilaria caudata M_176_S67 maleintronNODE_69_length_56878_cov_4.412084 16064..16161 +
Gcaud9503.t2.intron4Gcaud9503.t2.intron4Gracilaria caudata M_176_S67 maleintronNODE_69_length_56878_cov_4.412084 16308..16390 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9503.t2.stop1Gcaud9503.t2.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_69_length_56878_cov_4.412084 16435..16437 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9503.t2 ID=Gcaud9503.t2|Name=Gcaud9503.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=134bp
MEGKLSIWIKSGSFNHYRDLYIQVLVDDNDIWRTDDKDGFSPNWDSTVVK
HVKGDYEKIILRLMDEDTFTRDDVIATAEFPIADLLDDGINDDEIPMCDA
DGNQIGTLAVNINFEEGDVNLFQLFGSMLHKGE*
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spliced messenger RNA

>Gcaud9503.t2 ID=Gcaud9503.t2|Name=Gcaud9503.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=402bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:15675..16437+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGGAAAGCTCAGCATTTGGATCAAGTCTGGTAGCTTCAATCATTA
CAGAGATCTTTATATCCAGGTCCTCGTCGATGACAACGATATCTGGAGAA
CTGATGATAAGGATGGTTTCTCGCCCAATTGGGACTCCACTGTCGTCAAG
CATGTCAAGGGCGATTACGAGAAGATCATCCTCAGGCTCATGGACGAAGA
TACATTCACACGTGACGACGTAATTGCCACTGCTGAGTTCCCCATCGCCG
ACTTGCTCGATGATGGTATCAACGATGACGAAATCCCCATGTGTGACGCA
GATGGTAACCAAATCGGAACTTTGGCAGTGAACATCAACTTTGAAGAGGG
AGATGTGAATCTGTTCCAGCTCTTTGGATCAATGCTTCACAAGGGAGAAT
AA
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protein sequence of Gcaud9503.t2

>Gcaud9503.t2 ID=Gcaud9503.t2|Name=Gcaud9503.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=134bp
MEGKLSIWIKSGSFNHYRDLYIQVLVDDNDIWRTDDKDGFSPNWDSTVVK
HVKGDYEKIILRLMDEDTFTRDDVIATAEFPIADLLDDGINDDEIPMCDA
DGNQIGTLAVNINFEEGDVNLFQLFGSMLHKGE*
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mRNA from alignment at NODE_69_length_56878_cov_4.412084:15675..16437+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9503.t2 ID=Gcaud9503.t2|Name=Gcaud9503.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=763bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:15675..16437+ (Gracilaria caudata M_176_S67 male)
ATGGAGGGAAAGCTCAGCATTTGGATCAAGTCTGGTAGCTTCAATCATTA
CAGAGATCTTTATATCCAGGTCCTCGTCGATGACAACGATGTACGTTCCA
AAGCTGCTTCAGCAACAGCACCTTGTTCGTTAAGTACTAATCGATGCTCT
TTGTTTTCTAATACACAGATCTGGAGAACTGATGATAAGGATGGTTTCTC
GCCCAATTGGGACTCCACTGTCGTCAAGCATGTCAAGGGCGATTACGAGA
AGATCATCCTCAGGCTCATGGACGAAGATACATGTACGTGATTGGTTACG
TATGTATTAGCTGCACGTCCACATTACTGACCATTTTGTTGCGTGTTCGC
ACCGTGATGTGCGCTTGATCATACATCCTCGACAGTCACGTAAGTAGTGC
TCAGCGCTATTGCACAAAGCTTGACAAGTTGAACTACATCGATTGCTAAC
ACAGCACCGCTTATCCACGTATCTTAACGTTCTTTAGACGTGACGACGTA
ATTGCCACTGCTGAGTTCCCCATCGCCGACTTGCTCGATGATGGTATCAA
CGATGACGAAATCCCCATGTGTGACGCAGATGGTAACCAAATCGGAACTT
TGGCAGTGAACATCAACTTTGAAGAGGGAGATGGTGAGTTGAAGCACACA
CCAACATGACTTTGCATTTCTTTTCGTATTTGAATGCTAACCAGCGATGT
TACTCAATGTTATTAGTGAATCTGTTCCAGCTCTTTGGATCAATGCTTCA
CAAGGGAGAATAA
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Coding sequence (CDS) from alignment at NODE_69_length_56878_cov_4.412084:15675..16437+

>Gcaud9503.t2 ID=Gcaud9503.t2|Name=Gcaud9503.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=402bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:15675..16437+ (Gracilaria caudata M_176_S67 male)
ATGGAGGGAAAGCTCAGCATTTGGATCAAGTCTGGTAGCTTCAATCATTA
CAGAGATCTTTATATCCAGGTCCTCGTCGATGACAACGATATCTGGAGAA
CTGATGATAAGGATGGTTTCTCGCCCAATTGGGACTCCACTGTCGTCAAG
CATGTCAAGGGCGATTACGAGAAGATCATCCTCAGGCTCATGGACGAAGA
TACATTCACACGTGACGACGTAATTGCCACTGCTGAGTTCCCCATCGCCG
ACTTGCTCGATGATGGTATCAACGATGACGAAATCCCCATGTGTGACGCA
GATGGTAACCAAATCGGAACTTTGGCAGTGAACATCAACTTTGAAGAGGG
AGATGTGAATCTGTTCCAGCTCTTTGGATCAATGCTTCACAAGGGAGAAT
AA
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