Gcaud9502.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9502.t1
Unique Name	Gcaud9502.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	361

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_69_length_56878_cov_4.412084	contig	NODE_69_length_56878_cov_4.412084:11501..12583 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMD125CT
PFAMs	DnaJ,DnaJ_C
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K09510,ko:K09511
Evalue	4.44e-36
EggNOG OGs	COG0484@1\|root,KOG0714@2759\|Eukaryota
Description	protein folding
COG category	O
BRITE	ko00000,ko03110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9502	Gcaud9502	Gracilaria caudata M_176_S67 male	gene	NODE_69_length_56878_cov_4.412084 11501..12583 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9502.t1.start1	Gcaud9502.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_69_length_56878_cov_4.412084 11501..11503 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9502.t1.CDS1	Gcaud9502.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_69_length_56878_cov_4.412084 11501..12583 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9502.t1.exon1	Gcaud9502.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_69_length_56878_cov_4.412084 11501..12583 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9502.t1.stop1	Gcaud9502.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_69_length_56878_cov_4.412084 12581..12583 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9502.t1	Gcaud9502.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_69_length_56878_cov_4.412084 11501..12583 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_69_length_56878_cov_4.412084:11501..12583+
coding sequence from alignment at NODE_69_length_56878_cov_4.412084:11501..12583+

mRNA sequence

>Gcaud9502.t1 ID=Gcaud9502.t1|Name=Gcaud9502.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=361bp
MHLSNSAFISPVSVPNCSPSAWARTSRRPHRRPRAYISRRCTIVATKDPY
EVLGVSREADAATIKRAYRRAALKNHPDVSKEPDARDRFMRIQEAYAVLS
DPSKRASFDRQRASASGFNSFAKGFGFDFDASQYAKKWREANPMPEDIND
SLGSIFSDLFSGVAGAVGSNGVIEDFVEFLEKRVEGFGMGGDDGLNEVLN
SSDVDVLETEIEDAKFVLRQLRSRKIRVEDEEQSLRQRARDWRKRADRAD
DRKDYDVRDAAREREQELLRDADRFSKRAAKAASLVRDQEQRLQKIEDRL
HFVRNKQKEGEDSRQRRSTGRTTSDDIAGRPRSSVSESRNKSQQAAIDDE
IQKMKRELGL*

spliced messenger RNA

>Gcaud9502.t1 ID=Gcaud9502.t1|Name=Gcaud9502.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1083bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:11501..12583+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCTTTCCAATTCCGCCTTTATCTCGCCTGTATCTGTTCCAAACTG
TTCGCCAAGCGCCTGGGCGCGCACTTCTCGTCGACCTCATCGACGTCCAC
GTGCCTATATATCACGTCGCTGTACCATCGTCGCCACTAAAGACCCATAT
GAAGTGCTCGGCGTTTCACGAGAGGCAGATGCTGCCACGATCAAACGAGC
ATACAGGCGGGCAGCACTCAAGAATCATCCAGATGTTAGCAAGGAGCCTG
ATGCCCGCGATCGTTTTATGAGAATTCAGGAGGCATATGCTGTGCTTTCC
GACCCTTCCAAACGTGCTTCGTTTGATAGACAGCGTGCATCGGCATCCGG
TTTCAACTCGTTTGCCAAGGGATTTGGATTTGACTTTGATGCGTCTCAGT
ATGCCAAGAAATGGCGGGAAGCCAACCCGATGCCGGAGGATATTAACGAT
AGTCTTGGAAGCATTTTCTCTGATTTGTTCTCTGGTGTGGCTGGTGCAGT
CGGCTCAAATGGTGTCATTGAGGACTTTGTTGAGTTTCTGGAGAAGCGTG
TTGAGGGATTTGGGATGGGTGGAGATGATGGTCTCAATGAGGTGCTCAAC
AGTTCTGACGTCGATGTGCTTGAAACTGAAATCGAAGACGCCAAGTTCGT
ACTAAGACAGCTTCGCTCCAGAAAAATTAGGGTTGAGGACGAGGAGCAAA
GCCTCCGACAGCGAGCTCGAGATTGGAGAAAACGTGCAGACCGTGCTGAT
GACCGAAAAGATTATGATGTCCGTGATGCTGCGCGCGAACGGGAACAAGA
ATTGCTTAGAGATGCCGATAGGTTTTCAAAACGAGCAGCAAAAGCTGCGT
CCCTTGTACGTGACCAAGAGCAACGATTGCAGAAGATTGAAGACAGGTTA
CATTTCGTGCGAAACAAACAGAAAGAAGGGGAAGATTCTCGTCAAAGACG
AAGCACAGGGAGAACAACATCAGATGATATTGCTGGCAGGCCTAGAAGTT
CGGTTTCGGAGAGTCGGAACAAGTCTCAGCAAGCCGCGATCGATGACGAG
ATACAAAAGATGAAGCGAGAGCTGGGATTGTGA

protein sequence of Gcaud9502.t1

>Gcaud9502.t1 ID=Gcaud9502.t1|Name=Gcaud9502.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=361bp
MHLSNSAFISPVSVPNCSPSAWARTSRRPHRRPRAYISRRCTIVATKDPY
EVLGVSREADAATIKRAYRRAALKNHPDVSKEPDARDRFMRIQEAYAVLS
DPSKRASFDRQRASASGFNSFAKGFGFDFDASQYAKKWREANPMPEDIND
SLGSIFSDLFSGVAGAVGSNGVIEDFVEFLEKRVEGFGMGGDDGLNEVLN
SSDVDVLETEIEDAKFVLRQLRSRKIRVEDEEQSLRQRARDWRKRADRAD
DRKDYDVRDAAREREQELLRDADRFSKRAAKAASLVRDQEQRLQKIEDRL
HFVRNKQKEGEDSRQRRSTGRTTSDDIAGRPRSSVSESRNKSQQAAIDDE
IQKMKRELGL*

mRNA from alignment at NODE_69_length_56878_cov_4.412084:11501..12583+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9502.t1 ID=Gcaud9502.t1|Name=Gcaud9502.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1083bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:11501..12583+ (Gracilaria caudata M_176_S67 male)
ATGCACCTTTCCAATTCCGCCTTTATCTCGCCTGTATCTGTTCCAAACTG
TTCGCCAAGCGCCTGGGCGCGCACTTCTCGTCGACCTCATCGACGTCCAC
GTGCCTATATATCACGTCGCTGTACCATCGTCGCCACTAAAGACCCATAT
GAAGTGCTCGGCGTTTCACGAGAGGCAGATGCTGCCACGATCAAACGAGC
ATACAGGCGGGCAGCACTCAAGAATCATCCAGATGTTAGCAAGGAGCCTG
ATGCCCGCGATCGTTTTATGAGAATTCAGGAGGCATATGCTGTGCTTTCC
GACCCTTCCAAACGTGCTTCGTTTGATAGACAGCGTGCATCGGCATCCGG
TTTCAACTCGTTTGCCAAGGGATTTGGATTTGACTTTGATGCGTCTCAGT
ATGCCAAGAAATGGCGGGAAGCCAACCCGATGCCGGAGGATATTAACGAT
AGTCTTGGAAGCATTTTCTCTGATTTGTTCTCTGGTGTGGCTGGTGCAGT
CGGCTCAAATGGTGTCATTGAGGACTTTGTTGAGTTTCTGGAGAAGCGTG
TTGAGGGATTTGGGATGGGTGGAGATGATGGTCTCAATGAGGTGCTCAAC
AGTTCTGACGTCGATGTGCTTGAAACTGAAATCGAAGACGCCAAGTTCGT
ACTAAGACAGCTTCGCTCCAGAAAAATTAGGGTTGAGGACGAGGAGCAAA
GCCTCCGACAGCGAGCTCGAGATTGGAGAAAACGTGCAGACCGTGCTGAT
GACCGAAAAGATTATGATGTCCGTGATGCTGCGCGCGAACGGGAACAAGA
ATTGCTTAGAGATGCCGATAGGTTTTCAAAACGAGCAGCAAAAGCTGCGT
CCCTTGTACGTGACCAAGAGCAACGATTGCAGAAGATTGAAGACAGGTTA
CATTTCGTGCGAAACAAACAGAAAGAAGGGGAAGATTCTCGTCAAAGACG
AAGCACAGGGAGAACAACATCAGATGATATTGCTGGCAGGCCTAGAAGTT
CGGTTTCGGAGAGTCGGAACAAGTCTCAGCAAGCCGCGATCGATGACGAG
ATACAAAAGATGAAGCGAGAGCTGGGATTGTGA

Coding sequence (CDS) from alignment at NODE_69_length_56878_cov_4.412084:11501..12583+

>Gcaud9502.t1 ID=Gcaud9502.t1|Name=Gcaud9502.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1083bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:11501..12583+ (Gracilaria caudata M_176_S67 male)
ATGCACCTTTCCAATTCCGCCTTTATCTCGCCTGTATCTGTTCCAAACTG
TTCGCCAAGCGCCTGGGCGCGCACTTCTCGTCGACCTCATCGACGTCCAC
GTGCCTATATATCACGTCGCTGTACCATCGTCGCCACTAAAGACCCATAT
GAAGTGCTCGGCGTTTCACGAGAGGCAGATGCTGCCACGATCAAACGAGC
ATACAGGCGGGCAGCACTCAAGAATCATCCAGATGTTAGCAAGGAGCCTG
ATGCCCGCGATCGTTTTATGAGAATTCAGGAGGCATATGCTGTGCTTTCC
GACCCTTCCAAACGTGCTTCGTTTGATAGACAGCGTGCATCGGCATCCGG
TTTCAACTCGTTTGCCAAGGGATTTGGATTTGACTTTGATGCGTCTCAGT
ATGCCAAGAAATGGCGGGAAGCCAACCCGATGCCGGAGGATATTAACGAT
AGTCTTGGAAGCATTTTCTCTGATTTGTTCTCTGGTGTGGCTGGTGCAGT
CGGCTCAAATGGTGTCATTGAGGACTTTGTTGAGTTTCTGGAGAAGCGTG
TTGAGGGATTTGGGATGGGTGGAGATGATGGTCTCAATGAGGTGCTCAAC
AGTTCTGACGTCGATGTGCTTGAAACTGAAATCGAAGACGCCAAGTTCGT
ACTAAGACAGCTTCGCTCCAGAAAAATTAGGGTTGAGGACGAGGAGCAAA
GCCTCCGACAGCGAGCTCGAGATTGGAGAAAACGTGCAGACCGTGCTGAT
GACCGAAAAGATTATGATGTCCGTGATGCTGCGCGCGAACGGGAACAAGA
ATTGCTTAGAGATGCCGATAGGTTTTCAAAACGAGCAGCAAAAGCTGCGT
CCCTTGTACGTGACCAAGAGCAACGATTGCAGAAGATTGAAGACAGGTTA
CATTTCGTGCGAAACAAACAGAAAGAAGGGGAAGATTCTCGTCAAAGACG
AAGCACAGGGAGAACAACATCAGATGATATTGCTGGCAGGCCTAGAAGTT
CGGTTTCGGAGAGTCGGAACAAGTCTCAGCAAGCCGCGATCGATGACGAG
ATACAAAAGATGAAGCGAGAGCTGGGATTGTGA