Gcaud9497.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9497.t1
Unique NameGcaud9497.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length247
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_69_length_56878_cov_4.412084contigNODE_69_length_56878_cov_4.412084:692..1432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1007105.PT7_2530
Preferred nameapaG
PFAMsDUF525
Max annot lvl28216|Betaproteobacteria
KEGG koko:K06195
Evalue4e-29
EggNOG OGsCOG2967@1|root,COG2967@2|Bacteria,1MZ2Z@1224|Proteobacteria,2VSPE@28216|Betaproteobacteria,3T445@506|Alcaligenaceae
Descriptionprotein affecting Mg2 Co2 transport
COG categoryP
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9497Gcaud9497Gracilaria caudata M_176_S67 malegeneNODE_69_length_56878_cov_4.412084 692..1432 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9497.t1.start1Gcaud9497.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_69_length_56878_cov_4.412084 692..694 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9497.t1.CDS1Gcaud9497.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_69_length_56878_cov_4.412084 692..1432 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9497.t1.exon1Gcaud9497.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_69_length_56878_cov_4.412084 692..1432 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9497.t1.stop1Gcaud9497.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_69_length_56878_cov_4.412084 1430..1432 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9497.t1Gcaud9497.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_69_length_56878_cov_4.412084 692..1432 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9497.t1 ID=Gcaud9497.t1|Name=Gcaud9497.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=247bp
LFRQLDELQHSLSLAVRRERFADAARLRDEIHSLRLSDDYCRTEIALSDA
VNEQRFGDAARLRDVLKGLDPPPLAAGEQKQARAAGEAGASLANEVAQLT
PEEAPVSSLTRSHDISVRAESYYMPEQSVPEDNRFLFGYKIIITNESKHV
CQLVSRHWIIGSSGNSDSHVKGAGVVGRQPVLMPGESFEYTSACPICSSL
QPAQCVVGSMRGHFLFCRGDTGNIRFLVNVDRFYLQLPFRHSRHSS*
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spliced messenger RNA

>Gcaud9497.t1 ID=Gcaud9497.t1|Name=Gcaud9497.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=741bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:692..1432+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGTTCCGCCAGTTGGACGAGCTGCAGCACAGTCTGTCGCTGGCTGTGAG
GCGCGAGCGATTCGCGGACGCGGCGCGATTAAGAGATGAGATTCATTCGT
TGCGATTGTCGGACGATTACTGTCGCACCGAGATTGCGTTGTCCGACGCC
GTCAATGAGCAGCGATTCGGCGACGCTGCGCGCCTGAGGGACGTGTTGAA
GGGGCTCGACCCGCCGCCGTTGGCTGCTGGCGAGCAGAAGCAAGCGCGCG
CTGCGGGTGAGGCGGGCGCGTCGCTGGCGAACGAAGTGGCGCAACTCACG
CCGGAAGAGGCGCCCGTCAGCTCGCTTACGCGCTCGCATGACATCAGCGT
GCGCGCTGAAAGCTATTACATGCCGGAGCAGAGCGTTCCGGAAGACAACC
GCTTCTTGTTCGGGTACAAAATTATCATCACCAACGAAAGCAAGCACGTG
TGCCAGCTTGTGTCCAGACATTGGATTATTGGCAGCTCCGGCAACTCTGA
CAGCCACGTGAAGGGCGCGGGCGTGGTGGGAAGACAGCCGGTGCTCATGC
CGGGCGAGAGCTTTGAGTACACGTCGGCGTGCCCGATTTGCAGCAGCCTG
CAGCCGGCGCAGTGCGTGGTGGGTAGCATGCGTGGCCACTTCTTGTTTTG
TCGCGGAGACACGGGTAACATCCGTTTCTTGGTCAACGTTGATCGCTTTT
ACTTGCAGCTTCCGTTTCGTCACTCGAGGCACTCGTCATGA
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protein sequence of Gcaud9497.t1

>Gcaud9497.t1 ID=Gcaud9497.t1|Name=Gcaud9497.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=247bp
LFRQLDELQHSLSLAVRRERFADAARLRDEIHSLRLSDDYCRTEIALSDA
VNEQRFGDAARLRDVLKGLDPPPLAAGEQKQARAAGEAGASLANEVAQLT
PEEAPVSSLTRSHDISVRAESYYMPEQSVPEDNRFLFGYKIIITNESKHV
CQLVSRHWIIGSSGNSDSHVKGAGVVGRQPVLMPGESFEYTSACPICSSL
QPAQCVVGSMRGHFLFCRGDTGNIRFLVNVDRFYLQLPFRHSRHSS*
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mRNA from alignment at NODE_69_length_56878_cov_4.412084:692..1432+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9497.t1 ID=Gcaud9497.t1|Name=Gcaud9497.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=741bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:692..1432+ (Gracilaria caudata M_176_S67 male)
CTGTTCCGCCAGTTGGACGAGCTGCAGCACAGTCTGTCGCTGGCTGTGAG
GCGCGAGCGATTCGCGGACGCGGCGCGATTAAGAGATGAGATTCATTCGT
TGCGATTGTCGGACGATTACTGTCGCACCGAGATTGCGTTGTCCGACGCC
GTCAATGAGCAGCGATTCGGCGACGCTGCGCGCCTGAGGGACGTGTTGAA
GGGGCTCGACCCGCCGCCGTTGGCTGCTGGCGAGCAGAAGCAAGCGCGCG
CTGCGGGTGAGGCGGGCGCGTCGCTGGCGAACGAAGTGGCGCAACTCACG
CCGGAAGAGGCGCCCGTCAGCTCGCTTACGCGCTCGCATGACATCAGCGT
GCGCGCTGAAAGCTATTACATGCCGGAGCAGAGCGTTCCGGAAGACAACC
GCTTCTTGTTCGGGTACAAAATTATCATCACCAACGAAAGCAAGCACGTG
TGCCAGCTTGTGTCCAGACATTGGATTATTGGCAGCTCCGGCAACTCTGA
CAGCCACGTGAAGGGCGCGGGCGTGGTGGGAAGACAGCCGGTGCTCATGC
CGGGCGAGAGCTTTGAGTACACGTCGGCGTGCCCGATTTGCAGCAGCCTG
CAGCCGGCGCAGTGCGTGGTGGGTAGCATGCGTGGCCACTTCTTGTTTTG
TCGCGGAGACACGGGTAACATCCGTTTCTTGGTCAACGTTGATCGCTTTT
ACTTGCAGCTTCCGTTTCGTCACTCGAGGCACTCGTCATGA
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Coding sequence (CDS) from alignment at NODE_69_length_56878_cov_4.412084:692..1432+

>Gcaud9497.t1 ID=Gcaud9497.t1|Name=Gcaud9497.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=741bp|location=Sequence derived from alignment at NODE_69_length_56878_cov_4.412084:692..1432+ (Gracilaria caudata M_176_S67 male)
CTGTTCCGCCAGTTGGACGAGCTGCAGCACAGTCTGTCGCTGGCTGTGAG
GCGCGAGCGATTCGCGGACGCGGCGCGATTAAGAGATGAGATTCATTCGT
TGCGATTGTCGGACGATTACTGTCGCACCGAGATTGCGTTGTCCGACGCC
GTCAATGAGCAGCGATTCGGCGACGCTGCGCGCCTGAGGGACGTGTTGAA
GGGGCTCGACCCGCCGCCGTTGGCTGCTGGCGAGCAGAAGCAAGCGCGCG
CTGCGGGTGAGGCGGGCGCGTCGCTGGCGAACGAAGTGGCGCAACTCACG
CCGGAAGAGGCGCCCGTCAGCTCGCTTACGCGCTCGCATGACATCAGCGT
GCGCGCTGAAAGCTATTACATGCCGGAGCAGAGCGTTCCGGAAGACAACC
GCTTCTTGTTCGGGTACAAAATTATCATCACCAACGAAAGCAAGCACGTG
TGCCAGCTTGTGTCCAGACATTGGATTATTGGCAGCTCCGGCAACTCTGA
CAGCCACGTGAAGGGCGCGGGCGTGGTGGGAAGACAGCCGGTGCTCATGC
CGGGCGAGAGCTTTGAGTACACGTCGGCGTGCCCGATTTGCAGCAGCCTG
CAGCCGGCGCAGTGCGTGGTGGGTAGCATGCGTGGCCACTTCTTGTTTTG
TCGCGGAGACACGGGTAACATCCGTTTCTTGGTCAACGTTGATCGCTTTT
ACTTGCAGCTTCCGTTTCGTCACTCGAGGCACTCGTCATGA
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