Gcaud9496.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9496.t1
Unique Name	Gcaud9496.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	499

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1494_length_10218_cov_4.581614	contig	NODE_1494_length_10218_cov_4.581614:2321..3817 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	48698.ENSPFOP00000015763
Preferred name	MIB2
PFAMs	Ank_2,Ank_3,Ank_4,Ank_5,MIB_HERC2,ZZ,zf-C3HC4_3
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K10645
GOs	GO:0000151,GO:0000209,GO:0000768,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005829,GO:0006464,GO:0006807,GO:0006949,GO:0007520,GO:0008092,GO:0008150,GO:0008152,GO:0008270,GO:0009653,GO:0009987,GO:0012505,GO:0014902,GO:0016567,GO:0016740,GO:0017022,GO:0019538,GO:0019725,GO:0019787,GO:0030016,GO:0030017,GO:0030018,GO:0030154,GO:0031410,GO:0031430,GO:0031672,GO:0031674,GO:0031982,GO:0032027,GO:0032033,GO:0032036,GO:0032038,GO:0032446,GO:0032502,GO:0032991,GO:0036211,GO:0042592,GO:0042692,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0043292,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044444,GO:0044449,GO:0044464,GO:0045159,GO:0046716,GO:0046872,GO:0046914,GO:0048646,GO:0048856,GO:0048869,GO:0051146,GO:0060249,GO:0061061,GO:0061630,GO:0061659,GO:0065007,GO:0065008,GO:0070647,GO:0071704,GO:0097708,GO:0099080,GO:0099081,GO:0099512,GO:0140096,GO:1901564,GO:1902494,GO:1990234
Evalue	7.45e-14
EggNOG OGs	COG0666@1\|root,KOG4582@1\|root,KOG0504@2759\|Eukaryota,KOG4582@2759\|Eukaryota,38G8W@33154\|Opisthokonta,3B9Q8@33208\|Metazoa,3CVHS@33213\|Bilateria,484P8@7711\|Chordata,48YWR@7742\|Vertebrata,49TJS@7898\|Actinopterygii
EC	2.3.2.27
Description	Mindbomb E3 ubiquitin protein ligase 2
COG category	O
BRITE	ko00000,ko01000,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9496	Gcaud9496	Gracilaria caudata M_176_S67 male	gene	NODE_1494_length_10218_cov_4.581614 2321..3817 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9496.t1.stop1	Gcaud9496.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1494_length_10218_cov_4.581614 2321..2323 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9496.t1.CDS1	Gcaud9496.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1494_length_10218_cov_4.581614 2321..3817 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9496.t1.exon1	Gcaud9496.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1494_length_10218_cov_4.581614 2321..3817 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9496.t1.start1	Gcaud9496.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1494_length_10218_cov_4.581614 3815..3817 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9496.t1	Gcaud9496.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1494_length_10218_cov_4.581614 2321..3817 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1494_length_10218_cov_4.581614:2321..3817-
coding sequence from alignment at NODE_1494_length_10218_cov_4.581614:2321..3817-

mRNA sequence

>Gcaud9496.t1 ID=Gcaud9496.t1|Name=Gcaud9496.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=499bp
MSALLTSQQRSFRPTGKVVVVPDHDVSRLSYYLRCTTLDCGIDIIVDDLV
DFKNVHKLPKARQDAIFRLAANEFSVSKMVNTTIFLDESGELCENRLNMF
IELKKVTNVLAVGSSALVGGKQVEISKIMVFKPAWLQKYYFEPLQRWKER
EQASGSRHQLQLLTSLLANIFRKDVTETASNHCDHCKGLEGSCVCEHACP
PRQSTKCSAPGHCEHCKGIESAACECQADCPRSQFAKCSIVHTSIICDAC
RTTGLRGSRFKCDVCPDYDLCEECYRGGKHELTHPFSKIGRVGSNPIHLR
PRQEPKVRDGSALNAKASTSSSATPAQVPSKPHKAKPDETEKALITFIGE
KMCVSQMKDYLNENGVSYVGIREKLELLKLVWETQIEAMGAKELDAFIDA
HCISCTEGRSVSAKRKAAVAAFDVIHKRTAAQRTEAAFREGDVVQLCGLN
KESMNGMLASVVRSEAVNGRVQVRLVDDENCRYNIRPENLQAVPQDLD*

spliced messenger RNA

>Gcaud9496.t1 ID=Gcaud9496.t1|Name=Gcaud9496.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1497bp|location=Sequence derived from alignment at NODE_1494_length_10218_cov_4.581614:2321..3817- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGCGTTGTTGACATCGCAACAGCGCTCTTTCCGACCCACGGGTAA
GGTAGTAGTTGTTCCAGATCACGATGTATCCCGTTTATCGTACTACCTCC
GCTGCACCACCCTGGATTGCGGCATCGACATCATTGTGGACGACCTAGTC
GATTTCAAAAACGTGCACAAGCTACCCAAAGCCCGCCAAGACGCAATCTT
TAGGCTCGCTGCCAATGAGTTCAGTGTGTCCAAAATGGTCAACACGACGA
TATTTCTCGATGAGTCCGGCGAGTTATGCGAAAACCGTCTGAATATGTTC
ATTGAGCTGAAGAAGGTTACAAACGTGCTCGCCGTCGGTTCTTCCGCACT
AGTTGGTGGTAAACAAGTAGAGATATCAAAAATCATGGTGTTCAAGCCAG
CTTGGCTGCAAAAGTATTACTTCGAACCTCTTCAGAGATGGAAGGAACGG
GAACAAGCTTCTGGTTCACGTCATCAACTACAGCTTCTAACATCTCTCTT
AGCAAACATCTTTCGCAAAGATGTTACAGAAACTGCGTCCAACCACTGCG
ATCACTGCAAGGGTTTAGAAGGATCATGTGTTTGTGAACATGCTTGCCCT
CCCAGACAATCTACAAAGTGCTCGGCGCCAGGTCATTGTGAACACTGTAA
AGGAATTGAGTCTGCAGCTTGTGAATGTCAAGCTGATTGCCCTAGAAGTC
AGTTTGCAAAGTGTTCTATCGTTCACACTTCAATCATTTGCGATGCGTGT
AGGACGACAGGACTGCGAGGTTCGCGCTTTAAGTGTGACGTGTGTCCCGA
TTATGATCTTTGCGAAGAGTGCTACCGTGGAGGGAAACACGAATTGACCC
ATCCATTCTCCAAAATTGGACGAGTTGGGTCAAATCCCATTCATCTTCGG
CCTCGTCAAGAACCCAAAGTCAGAGATGGAAGCGCACTGAATGCGAAGGC
CTCAACATCTTCATCGGCAACACCGGCGCAAGTCCCATCGAAGCCCCATA
AGGCGAAACCAGACGAAACAGAGAAGGCTTTAATCACTTTTATAGGCGAA
AAAATGTGCGTTTCACAAATGAAGGACTATTTGAATGAGAATGGGGTAAG
TTATGTTGGAATCCGCGAGAAACTAGAGCTCTTGAAGCTAGTATGGGAGA
CGCAGATCGAAGCAATGGGTGCAAAAGAGCTCGACGCTTTCATCGACGCG
CATTGCATCAGTTGCACTGAAGGACGTAGCGTGAGTGCGAAAAGGAAAGC
CGCAGTTGCTGCTTTTGATGTGATTCACAAGCGAACTGCAGCTCAGCGTA
CTGAAGCAGCTTTTCGCGAAGGGGATGTTGTACAGCTTTGTGGTTTGAAC
AAGGAGAGCATGAACGGAATGCTTGCAAGTGTTGTGAGGAGTGAAGCTGT
CAATGGGAGGGTACAAGTGCGCCTTGTCGATGACGAGAATTGTCGGTACA
ATATTCGGCCCGAGAACTTGCAGGCTGTGCCTCAAGACTTGGACTGA

protein sequence of Gcaud9496.t1

>Gcaud9496.t1 ID=Gcaud9496.t1|Name=Gcaud9496.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=499bp
MSALLTSQQRSFRPTGKVVVVPDHDVSRLSYYLRCTTLDCGIDIIVDDLV
DFKNVHKLPKARQDAIFRLAANEFSVSKMVNTTIFLDESGELCENRLNMF
IELKKVTNVLAVGSSALVGGKQVEISKIMVFKPAWLQKYYFEPLQRWKER
EQASGSRHQLQLLTSLLANIFRKDVTETASNHCDHCKGLEGSCVCEHACP
PRQSTKCSAPGHCEHCKGIESAACECQADCPRSQFAKCSIVHTSIICDAC
RTTGLRGSRFKCDVCPDYDLCEECYRGGKHELTHPFSKIGRVGSNPIHLR
PRQEPKVRDGSALNAKASTSSSATPAQVPSKPHKAKPDETEKALITFIGE
KMCVSQMKDYLNENGVSYVGIREKLELLKLVWETQIEAMGAKELDAFIDA
HCISCTEGRSVSAKRKAAVAAFDVIHKRTAAQRTEAAFREGDVVQLCGLN
KESMNGMLASVVRSEAVNGRVQVRLVDDENCRYNIRPENLQAVPQDLD*

mRNA from alignment at NODE_1494_length_10218_cov_4.581614:2321..3817-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9496.t1 ID=Gcaud9496.t1|Name=Gcaud9496.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1497bp|location=Sequence derived from alignment at NODE_1494_length_10218_cov_4.581614:2321..3817- (Gracilaria caudata M_176_S67 male)
ATGTCAGCGTTGTTGACATCGCAACAGCGCTCTTTCCGACCCACGGGTAA
GGTAGTAGTTGTTCCAGATCACGATGTATCCCGTTTATCGTACTACCTCC
GCTGCACCACCCTGGATTGCGGCATCGACATCATTGTGGACGACCTAGTC
GATTTCAAAAACGTGCACAAGCTACCCAAAGCCCGCCAAGACGCAATCTT
TAGGCTCGCTGCCAATGAGTTCAGTGTGTCCAAAATGGTCAACACGACGA
TATTTCTCGATGAGTCCGGCGAGTTATGCGAAAACCGTCTGAATATGTTC
ATTGAGCTGAAGAAGGTTACAAACGTGCTCGCCGTCGGTTCTTCCGCACT
AGTTGGTGGTAAACAAGTAGAGATATCAAAAATCATGGTGTTCAAGCCAG
CTTGGCTGCAAAAGTATTACTTCGAACCTCTTCAGAGATGGAAGGAACGG
GAACAAGCTTCTGGTTCACGTCATCAACTACAGCTTCTAACATCTCTCTT
AGCAAACATCTTTCGCAAAGATGTTACAGAAACTGCGTCCAACCACTGCG
ATCACTGCAAGGGTTTAGAAGGATCATGTGTTTGTGAACATGCTTGCCCT
CCCAGACAATCTACAAAGTGCTCGGCGCCAGGTCATTGTGAACACTGTAA
AGGAATTGAGTCTGCAGCTTGTGAATGTCAAGCTGATTGCCCTAGAAGTC
AGTTTGCAAAGTGTTCTATCGTTCACACTTCAATCATTTGCGATGCGTGT
AGGACGACAGGACTGCGAGGTTCGCGCTTTAAGTGTGACGTGTGTCCCGA
TTATGATCTTTGCGAAGAGTGCTACCGTGGAGGGAAACACGAATTGACCC
ATCCATTCTCCAAAATTGGACGAGTTGGGTCAAATCCCATTCATCTTCGG
CCTCGTCAAGAACCCAAAGTCAGAGATGGAAGCGCACTGAATGCGAAGGC
CTCAACATCTTCATCGGCAACACCGGCGCAAGTCCCATCGAAGCCCCATA
AGGCGAAACCAGACGAAACAGAGAAGGCTTTAATCACTTTTATAGGCGAA
AAAATGTGCGTTTCACAAATGAAGGACTATTTGAATGAGAATGGGGTAAG
TTATGTTGGAATCCGCGAGAAACTAGAGCTCTTGAAGCTAGTATGGGAGA
CGCAGATCGAAGCAATGGGTGCAAAAGAGCTCGACGCTTTCATCGACGCG
CATTGCATCAGTTGCACTGAAGGACGTAGCGTGAGTGCGAAAAGGAAAGC
CGCAGTTGCTGCTTTTGATGTGATTCACAAGCGAACTGCAGCTCAGCGTA
CTGAAGCAGCTTTTCGCGAAGGGGATGTTGTACAGCTTTGTGGTTTGAAC
AAGGAGAGCATGAACGGAATGCTTGCAAGTGTTGTGAGGAGTGAAGCTGT
CAATGGGAGGGTACAAGTGCGCCTTGTCGATGACGAGAATTGTCGGTACA
ATATTCGGCCCGAGAACTTGCAGGCTGTGCCTCAAGACTTGGACTGA

Coding sequence (CDS) from alignment at NODE_1494_length_10218_cov_4.581614:2321..3817-

>Gcaud9496.t1 ID=Gcaud9496.t1|Name=Gcaud9496.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1497bp|location=Sequence derived from alignment at NODE_1494_length_10218_cov_4.581614:2321..3817- (Gracilaria caudata M_176_S67 male)
ATGTCAGCGTTGTTGACATCGCAACAGCGCTCTTTCCGACCCACGGGTAA
GGTAGTAGTTGTTCCAGATCACGATGTATCCCGTTTATCGTACTACCTCC
GCTGCACCACCCTGGATTGCGGCATCGACATCATTGTGGACGACCTAGTC
GATTTCAAAAACGTGCACAAGCTACCCAAAGCCCGCCAAGACGCAATCTT
TAGGCTCGCTGCCAATGAGTTCAGTGTGTCCAAAATGGTCAACACGACGA
TATTTCTCGATGAGTCCGGCGAGTTATGCGAAAACCGTCTGAATATGTTC
ATTGAGCTGAAGAAGGTTACAAACGTGCTCGCCGTCGGTTCTTCCGCACT
AGTTGGTGGTAAACAAGTAGAGATATCAAAAATCATGGTGTTCAAGCCAG
CTTGGCTGCAAAAGTATTACTTCGAACCTCTTCAGAGATGGAAGGAACGG
GAACAAGCTTCTGGTTCACGTCATCAACTACAGCTTCTAACATCTCTCTT
AGCAAACATCTTTCGCAAAGATGTTACAGAAACTGCGTCCAACCACTGCG
ATCACTGCAAGGGTTTAGAAGGATCATGTGTTTGTGAACATGCTTGCCCT
CCCAGACAATCTACAAAGTGCTCGGCGCCAGGTCATTGTGAACACTGTAA
AGGAATTGAGTCTGCAGCTTGTGAATGTCAAGCTGATTGCCCTAGAAGTC
AGTTTGCAAAGTGTTCTATCGTTCACACTTCAATCATTTGCGATGCGTGT
AGGACGACAGGACTGCGAGGTTCGCGCTTTAAGTGTGACGTGTGTCCCGA
TTATGATCTTTGCGAAGAGTGCTACCGTGGAGGGAAACACGAATTGACCC
ATCCATTCTCCAAAATTGGACGAGTTGGGTCAAATCCCATTCATCTTCGG
CCTCGTCAAGAACCCAAAGTCAGAGATGGAAGCGCACTGAATGCGAAGGC
CTCAACATCTTCATCGGCAACACCGGCGCAAGTCCCATCGAAGCCCCATA
AGGCGAAACCAGACGAAACAGAGAAGGCTTTAATCACTTTTATAGGCGAA
AAAATGTGCGTTTCACAAATGAAGGACTATTTGAATGAGAATGGGGTAAG
TTATGTTGGAATCCGCGAGAAACTAGAGCTCTTGAAGCTAGTATGGGAGA
CGCAGATCGAAGCAATGGGTGCAAAAGAGCTCGACGCTTTCATCGACGCG
CATTGCATCAGTTGCACTGAAGGACGTAGCGTGAGTGCGAAAAGGAAAGC
CGCAGTTGCTGCTTTTGATGTGATTCACAAGCGAACTGCAGCTCAGCGTA
CTGAAGCAGCTTTTCGCGAAGGGGATGTTGTACAGCTTTGTGGTTTGAAC
AAGGAGAGCATGAACGGAATGCTTGCAAGTGTTGTGAGGAGTGAAGCTGT
CAATGGGAGGGTACAAGTGCGCCTTGTCGATGACGAGAATTGTCGGTACA
ATATTCGGCCCGAGAACTTGCAGGCTGTGCCTCAAGACTTGGACTGA