Gcaud9495.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9495.t1
Unique NameGcaud9495.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length364
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1494_length_10218_cov_4.581614contigNODE_1494_length_10218_cov_4.581614:1162..2253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7918.ENSLOCP00000005721
PFAMsLdh_1_C,Ldh_1_N
Max annot lvl33208|Metazoa
KEGG rclassRC00031,RC00044
KEGG koko:K00016
KEGG ReactionR00703,R01000,R03104
KEGG Pathwayko00010,ko00270,ko00620,ko00640,ko01100,ko01110,ko01120,ko01130,ko04922,map00010,map00270,map00620,map00640,map01100,map01110,map01120,map01130,map04922
GOsGO:0000768,GO:0006949,GO:0007520,GO:0007525,GO:0008150,GO:0009653,GO:0009987,GO:0014902,GO:0030154,GO:0032502,GO:0042692,GO:0048646,GO:0048856,GO:0048869,GO:0051146,GO:0061061
Evalue9.15e-42
EggNOG OGsCOG0039@1|root,KOG1495@2759|Eukaryota,38G9C@33154|Opisthokonta,3BGT7@33208|Metazoa,3CW73@33213|Bilateria,484IM@7711|Chordata,49ESM@7742|Vertebrata
EC1.1.1.27
Descriptionlactate/malate dehydrogenase, NAD binding domain
COG categoryC
BRITEko00000,ko00001,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9495Gcaud9495Gracilaria caudata M_176_S67 malegeneNODE_1494_length_10218_cov_4.581614 1162..2253 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9495.t1.start1Gcaud9495.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1494_length_10218_cov_4.581614 1162..1164 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9495.t1.CDS1Gcaud9495.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1494_length_10218_cov_4.581614 1162..2253 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9495.t1.exon1Gcaud9495.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1494_length_10218_cov_4.581614 1162..2253 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9495.t1.stop1Gcaud9495.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1494_length_10218_cov_4.581614 2251..2253 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9495.t1Gcaud9495.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1494_length_10218_cov_4.581614 1162..2253 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9495.t1 ID=Gcaud9495.t1|Name=Gcaud9495.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=364bp
MSVFPSEPAALSTHRRVSLIGVTEYGRSFALSLIARNCATHLTLVDKHFE
KAKGEALDLQDALPFLPDIRLSHSSDPRASALSDVVVITVGQPFCSKFES
RMDLIQHNTRRVAEAAYAAASVSPEAVIVVGTDPVDAMTYVAAKAAHLAR
PQFELGFRVMGAGTALDLARLRAAIARRANVDAADVAANVVGEHGDNIVP
LWRYCRIRGIRLERICPELSEPAVRQAVTEEVRQAVYRIVEGKPEGSSKG
IGECLADLVQCLMTGIGNIRTVCTRVTAQHIAGLKEAVYMSVPCKIDSGG
VAGIFPFEVDGEERQQLMSATEVLCEAQRRADAVLAELDTYHGAVSVALP
SAALRSVASLPLA*
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spliced messenger RNA

>Gcaud9495.t1 ID=Gcaud9495.t1|Name=Gcaud9495.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1092bp|location=Sequence derived from alignment at NODE_1494_length_10218_cov_4.581614:1162..2253+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGTGTTTCCCAGCGAGCCGGCCGCGCTGTCCACGCACCGTCGCGT
GTCGCTCATCGGTGTCACCGAGTACGGCCGCTCCTTCGCGCTGTCGCTCA
TCGCGCGCAACTGCGCCACGCATCTCACGCTGGTGGACAAGCACTTCGAG
AAGGCCAAGGGCGAGGCGCTCGATCTTCAGGACGCGCTTCCGTTTCTACC
GGACATTCGTCTGAGCCACTCGTCCGATCCGCGCGCCAGCGCGCTGTCCG
ACGTGGTGGTCATCACGGTTGGACAGCCGTTTTGCTCCAAGTTCGAGTCG
CGCATGGATCTCATTCAGCACAACACgcgacgcgtggcggaggcggcgta
tgcggcggcgtcggtgtcgccggaggcggTGATTGTGGTGGGCACGGACC
CCGTGGACGCCATGACGTACGTGGCGGCGAAGGCGGCGCATCTGGCGCGT
CCGCAGTTCGAGCTGGGCTTCCGCGTGATGGGCGCCGGCACCGCGCTCGA
TCTGGCGCGTCTGCGCGCCGCGATTGCGCGCAGGGCGAACGTGGATGCGG
CCGACGTGGCGGCGAACGTGGTGGGCGAACACGGCGATAATATTGTGCCG
CTGTGGCGGTACTGTCGCATTCGCGGCATTCGGTTGGAGCGCATTTGTCC
GGAGCTGTCGGAGCCGGCGGTGAGGCAGGCGGTGACGGAGGAGGTGCGCC
AGGCGGTGTACCGCATCGTGGAGGGAAAGCCGGAGGGCTCTAGCAAGGGC
ATTGGCGAGTGTCTGGCGGACCTGGTGCAGTGTCTGATGACGGGCATTGG
CAACATTCGCACCGTGTGCACGAGGGTGACGGCGCAGCACATCGCGGGCT
TGAAGGAGGCGGTGTACATGTCGGTTCCTTGCAAGATCGACTCGGGCGGC
GTGGCGGGCATCTTCCCGTTCGAGGTGGACGGCGAGGAGCGGCAGCAGCT
GATGAGCGCCACGGAGGTGCTGTGCGAGGCGCAGCGGCGCGCGGACGCGG
TGCTGGCGGAGCTTGATACGTACCACGGCGCGGTGTCCGTGGCGCTGCCG
AGTGCGGCGCTGCGCTCGGTGGCCTCACTTCCGCTGGCGTGA
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protein sequence of Gcaud9495.t1

>Gcaud9495.t1 ID=Gcaud9495.t1|Name=Gcaud9495.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=364bp
MSVFPSEPAALSTHRRVSLIGVTEYGRSFALSLIARNCATHLTLVDKHFE
KAKGEALDLQDALPFLPDIRLSHSSDPRASALSDVVVITVGQPFCSKFES
RMDLIQHNTRRVAEAAYAAASVSPEAVIVVGTDPVDAMTYVAAKAAHLAR
PQFELGFRVMGAGTALDLARLRAAIARRANVDAADVAANVVGEHGDNIVP
LWRYCRIRGIRLERICPELSEPAVRQAVTEEVRQAVYRIVEGKPEGSSKG
IGECLADLVQCLMTGIGNIRTVCTRVTAQHIAGLKEAVYMSVPCKIDSGG
VAGIFPFEVDGEERQQLMSATEVLCEAQRRADAVLAELDTYHGAVSVALP
SAALRSVASLPLA*
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mRNA from alignment at NODE_1494_length_10218_cov_4.581614:1162..2253+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9495.t1 ID=Gcaud9495.t1|Name=Gcaud9495.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1092bp|location=Sequence derived from alignment at NODE_1494_length_10218_cov_4.581614:1162..2253+ (Gracilaria caudata M_176_S67 male)
ATGTCCGTGTTTCCCAGCGAGCCGGCCGCGCTGTCCACGCACCGTCGCGT
GTCGCTCATCGGTGTCACCGAGTACGGCCGCTCCTTCGCGCTGTCGCTCA
TCGCGCGCAACTGCGCCACGCATCTCACGCTGGTGGACAAGCACTTCGAG
AAGGCCAAGGGCGAGGCGCTCGATCTTCAGGACGCGCTTCCGTTTCTACC
GGACATTCGTCTGAGCCACTCGTCCGATCCGCGCGCCAGCGCGCTGTCCG
ACGTGGTGGTCATCACGGTTGGACAGCCGTTTTGCTCCAAGTTCGAGTCG
CGCATGGATCTCATTCAGCACAACACgcgacgcgtggcggaggcggcgta
tgcggcggcgtcggtgtcgccggaggcggTGATTGTGGTGGGCACGGACC
CCGTGGACGCCATGACGTACGTGGCGGCGAAGGCGGCGCATCTGGCGCGT
CCGCAGTTCGAGCTGGGCTTCCGCGTGATGGGCGCCGGCACCGCGCTCGA
TCTGGCGCGTCTGCGCGCCGCGATTGCGCGCAGGGCGAACGTGGATGCGG
CCGACGTGGCGGCGAACGTGGTGGGCGAACACGGCGATAATATTGTGCCG
CTGTGGCGGTACTGTCGCATTCGCGGCATTCGGTTGGAGCGCATTTGTCC
GGAGCTGTCGGAGCCGGCGGTGAGGCAGGCGGTGACGGAGGAGGTGCGCC
AGGCGGTGTACCGCATCGTGGAGGGAAAGCCGGAGGGCTCTAGCAAGGGC
ATTGGCGAGTGTCTGGCGGACCTGGTGCAGTGTCTGATGACGGGCATTGG
CAACATTCGCACCGTGTGCACGAGGGTGACGGCGCAGCACATCGCGGGCT
TGAAGGAGGCGGTGTACATGTCGGTTCCTTGCAAGATCGACTCGGGCGGC
GTGGCGGGCATCTTCCCGTTCGAGGTGGACGGCGAGGAGCGGCAGCAGCT
GATGAGCGCCACGGAGGTGCTGTGCGAGGCGCAGCGGCGCGCGGACGCGG
TGCTGGCGGAGCTTGATACGTACCACGGCGCGGTGTCCGTGGCGCTGCCG
AGTGCGGCGCTGCGCTCGGTGGCCTCACTTCCGCTGGCGTGA
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Coding sequence (CDS) from alignment at NODE_1494_length_10218_cov_4.581614:1162..2253+

>Gcaud9495.t1 ID=Gcaud9495.t1|Name=Gcaud9495.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1092bp|location=Sequence derived from alignment at NODE_1494_length_10218_cov_4.581614:1162..2253+ (Gracilaria caudata M_176_S67 male)
ATGTCCGTGTTTCCCAGCGAGCCGGCCGCGCTGTCCACGCACCGTCGCGT
GTCGCTCATCGGTGTCACCGAGTACGGCCGCTCCTTCGCGCTGTCGCTCA
TCGCGCGCAACTGCGCCACGCATCTCACGCTGGTGGACAAGCACTTCGAG
AAGGCCAAGGGCGAGGCGCTCGATCTTCAGGACGCGCTTCCGTTTCTACC
GGACATTCGTCTGAGCCACTCGTCCGATCCGCGCGCCAGCGCGCTGTCCG
ACGTGGTGGTCATCACGGTTGGACAGCCGTTTTGCTCCAAGTTCGAGTCG
CGCATGGATCTCATTCAGCACAACACgcgacgcgtggcggaggcggcgta
tgcggcggcgtcggtgtcgccggaggcggTGATTGTGGTGGGCACGGACC
CCGTGGACGCCATGACGTACGTGGCGGCGAAGGCGGCGCATCTGGCGCGT
CCGCAGTTCGAGCTGGGCTTCCGCGTGATGGGCGCCGGCACCGCGCTCGA
TCTGGCGCGTCTGCGCGCCGCGATTGCGCGCAGGGCGAACGTGGATGCGG
CCGACGTGGCGGCGAACGTGGTGGGCGAACACGGCGATAATATTGTGCCG
CTGTGGCGGTACTGTCGCATTCGCGGCATTCGGTTGGAGCGCATTTGTCC
GGAGCTGTCGGAGCCGGCGGTGAGGCAGGCGGTGACGGAGGAGGTGCGCC
AGGCGGTGTACCGCATCGTGGAGGGAAAGCCGGAGGGCTCTAGCAAGGGC
ATTGGCGAGTGTCTGGCGGACCTGGTGCAGTGTCTGATGACGGGCATTGG
CAACATTCGCACCGTGTGCACGAGGGTGACGGCGCAGCACATCGCGGGCT
TGAAGGAGGCGGTGTACATGTCGGTTCCTTGCAAGATCGACTCGGGCGGC
GTGGCGGGCATCTTCCCGTTCGAGGTGGACGGCGAGGAGCGGCAGCAGCT
GATGAGCGCCACGGAGGTGCTGTGCGAGGCGCAGCGGCGCGCGGACGCGG
TGCTGGCGGAGCTTGATACGTACCACGGCGCGGTGTCCGTGGCGCTGCCG
AGTGCGGCGCTGCGCTCGGTGGCCTCACTTCCGCTGGCGTGA
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