Gcaud9492.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9492.t1
Unique Name	Gcaud9492.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	240

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_925_length_16085_cov_4.297049	contig	NODE_925_length_16085_cov_4.297049:15012..15731 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	251229.Chro_5015
Max annot lvl	1117\|Cyanobacteria
Evalue	1.72e-35
EggNOG OGs	28PPV@1\|root,2ZCC6@2\|Bacteria,1G5I9@1117\|Cyanobacteria

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9492	Gcaud9492	Gracilaria caudata M_176_S67 male	gene	NODE_925_length_16085_cov_4.297049 15012..15731 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9492.t1.stop1	Gcaud9492.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_925_length_16085_cov_4.297049 15012..15014 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9492.t1.CDS1	Gcaud9492.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_925_length_16085_cov_4.297049 15012..15731 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9492.t1.exon1	Gcaud9492.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_925_length_16085_cov_4.297049 15012..15731 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9492.t1.start1	Gcaud9492.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_925_length_16085_cov_4.297049 15729..15731 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9492.t1	Gcaud9492.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_925_length_16085_cov_4.297049 15012..15731 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_925_length_16085_cov_4.297049:15012..15731-
coding sequence from alignment at NODE_925_length_16085_cov_4.297049:15012..15731-

mRNA sequence

>Gcaud9492.t1 ID=Gcaud9492.t1|Name=Gcaud9492.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=240bp
MKKPQEPPSIMTTLVFQSCPSFQLHRTRKAVSPFRQRGLSIRLFTSPRTV
PCRTPVRASLLQDLLAGPSSPPKPRPLYQVILFTVTTNFLWYGWYKYCIE
QELRRLTGEGPGGIGALLPFVVGVTSPLYLPRGGPAEFGVAAGVLWIVSV
QYYLYRRINALIVKNGASPPLTPWWIIIPGFNLIVGLRSVHFLSVAFGAD
ADSDPVVDFFPFLGKDTLGIWELLVSPSLWLRFGKGNEE*

spliced messenger RNA

>Gcaud9492.t1 ID=Gcaud9492.t1|Name=Gcaud9492.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=720bp|location=Sequence derived from alignment at NODE_925_length_16085_cov_4.297049:15012..15731- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAAAGCCGCAGGAACCGCCGTCAATCATGACAACTTTGGTTTTCCA
ATCATGCCCATCTTTCCAGCTGCACCGAACCCGCAAAGCAGTCAGTCCGT
TCCGCCAGAGAGGCTTATCCATTCGCCTCTTCACCAGTCCTCGAACTGTC
CCATGTCGAACGCCAGTCCGCGCCTCTCTCTTGCAGGATTTACTTGCCGG
TCCATCAAGTCCGCCCAAACCGCGTCCCCTCTATCAGGTGATTCTCTTCA
CTGTGACCACCAACTTTCTTTGGTACGGCTGGTACAAGTATTGCATAGAA
CAAGAACTACGTCGATTAACAGGAGAAGGCCCTGGCGGAATCGGTGCTTT
ATTGCCATTTGTTGTAGGAGTAACTTCTCCATTGTATCTTCCCAGAGGTG
GACCTGCCGAATTTGGAGTTGCTGCGGGAGTGCTCTGGATTGTTTCTGTA
CAGTACTATCTTTATCGTCGCATCAATGCTTTGATTGTTAAGAACGGCGC
TTCGCCTCCTCTTACCCCATGGTGGATAATTATTCCTGGCTTTAATCTCA
TTGTTGGCTTGAGAAGTGTCCACTTTCTTAGCGTCGCTTTTGGTGCGGAT
GCTGACTCTGACCCTGTAGTTGACTTCTTCCCATTCTTGGGTAAGGACAC
TCTGGGTATCTGGGAACTCCTTGTTTCTCCTTCTCTGTGGCTTCGTTTTG
GAAAAGGGAACGAAGAGTAA

protein sequence of Gcaud9492.t1

>Gcaud9492.t1 ID=Gcaud9492.t1|Name=Gcaud9492.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=240bp
MKKPQEPPSIMTTLVFQSCPSFQLHRTRKAVSPFRQRGLSIRLFTSPRTV
PCRTPVRASLLQDLLAGPSSPPKPRPLYQVILFTVTTNFLWYGWYKYCIE
QELRRLTGEGPGGIGALLPFVVGVTSPLYLPRGGPAEFGVAAGVLWIVSV
QYYLYRRINALIVKNGASPPLTPWWIIIPGFNLIVGLRSVHFLSVAFGAD
ADSDPVVDFFPFLGKDTLGIWELLVSPSLWLRFGKGNEE*

mRNA from alignment at NODE_925_length_16085_cov_4.297049:15012..15731-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9492.t1 ID=Gcaud9492.t1|Name=Gcaud9492.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=720bp|location=Sequence derived from alignment at NODE_925_length_16085_cov_4.297049:15012..15731- (Gracilaria caudata M_176_S67 male)
ATGAAAAAGCCGCAGGAACCGCCGTCAATCATGACAACTTTGGTTTTCCA
ATCATGCCCATCTTTCCAGCTGCACCGAACCCGCAAAGCAGTCAGTCCGT
TCCGCCAGAGAGGCTTATCCATTCGCCTCTTCACCAGTCCTCGAACTGTC
CCATGTCGAACGCCAGTCCGCGCCTCTCTCTTGCAGGATTTACTTGCCGG
TCCATCAAGTCCGCCCAAACCGCGTCCCCTCTATCAGGTGATTCTCTTCA
CTGTGACCACCAACTTTCTTTGGTACGGCTGGTACAAGTATTGCATAGAA
CAAGAACTACGTCGATTAACAGGAGAAGGCCCTGGCGGAATCGGTGCTTT
ATTGCCATTTGTTGTAGGAGTAACTTCTCCATTGTATCTTCCCAGAGGTG
GACCTGCCGAATTTGGAGTTGCTGCGGGAGTGCTCTGGATTGTTTCTGTA
CAGTACTATCTTTATCGTCGCATCAATGCTTTGATTGTTAAGAACGGCGC
TTCGCCTCCTCTTACCCCATGGTGGATAATTATTCCTGGCTTTAATCTCA
TTGTTGGCTTGAGAAGTGTCCACTTTCTTAGCGTCGCTTTTGGTGCGGAT
GCTGACTCTGACCCTGTAGTTGACTTCTTCCCATTCTTGGGTAAGGACAC
TCTGGGTATCTGGGAACTCCTTGTTTCTCCTTCTCTGTGGCTTCGTTTTG
GAAAAGGGAACGAAGAGTAA

Coding sequence (CDS) from alignment at NODE_925_length_16085_cov_4.297049:15012..15731-

>Gcaud9492.t1 ID=Gcaud9492.t1|Name=Gcaud9492.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=720bp|location=Sequence derived from alignment at NODE_925_length_16085_cov_4.297049:15012..15731- (Gracilaria caudata M_176_S67 male)
ATGAAAAAGCCGCAGGAACCGCCGTCAATCATGACAACTTTGGTTTTCCA
ATCATGCCCATCTTTCCAGCTGCACCGAACCCGCAAAGCAGTCAGTCCGT
TCCGCCAGAGAGGCTTATCCATTCGCCTCTTCACCAGTCCTCGAACTGTC
CCATGTCGAACGCCAGTCCGCGCCTCTCTCTTGCAGGATTTACTTGCCGG
TCCATCAAGTCCGCCCAAACCGCGTCCCCTCTATCAGGTGATTCTCTTCA
CTGTGACCACCAACTTTCTTTGGTACGGCTGGTACAAGTATTGCATAGAA
CAAGAACTACGTCGATTAACAGGAGAAGGCCCTGGCGGAATCGGTGCTTT
ATTGCCATTTGTTGTAGGAGTAACTTCTCCATTGTATCTTCCCAGAGGTG
GACCTGCCGAATTTGGAGTTGCTGCGGGAGTGCTCTGGATTGTTTCTGTA
CAGTACTATCTTTATCGTCGCATCAATGCTTTGATTGTTAAGAACGGCGC
TTCGCCTCCTCTTACCCCATGGTGGATAATTATTCCTGGCTTTAATCTCA
TTGTTGGCTTGAGAAGTGTCCACTTTCTTAGCGTCGCTTTTGGTGCGGAT
GCTGACTCTGACCCTGTAGTTGACTTCTTCCCATTCTTGGGTAAGGACAC
TCTGGGTATCTGGGAACTCCTTGTTTCTCCTTCTCTGTGGCTTCGTTTTG
GAAAAGGGAACGAAGAGTAA