Gcaud9491.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9491.t1
Unique Name	Gcaud9491.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	179

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_925_length_16085_cov_4.297049	contig	NODE_925_length_16085_cov_4.297049:13141..13677 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	248742.XP_005647503.1
PFAMs	DUF4033
Max annot lvl	3041\|Chlorophyta
Evalue	6.01e-34
EggNOG OGs	28YJ7@1\|root,2R5D2@2759\|Eukaryota,37JNH@33090\|Viridiplantae,34I9S@3041\|Chlorophyta
Description	Domain of unknown function (DUF4033)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9491	Gcaud9491	Gracilaria caudata M_176_S67 male	gene	NODE_925_length_16085_cov_4.297049 13141..13677 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9491.t1.stop1	Gcaud9491.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_925_length_16085_cov_4.297049 13141..13143 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9491.t1.CDS1	Gcaud9491.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_925_length_16085_cov_4.297049 13141..13677 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9491.t1.exon1	Gcaud9491.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_925_length_16085_cov_4.297049 13141..13677 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9491.t1.start1	Gcaud9491.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_925_length_16085_cov_4.297049 13675..13677 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9491.t1	Gcaud9491.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_925_length_16085_cov_4.297049 13141..13677 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_925_length_16085_cov_4.297049:13141..13677-
coding sequence from alignment at NODE_925_length_16085_cov_4.297049:13141..13677-

mRNA sequence

>Gcaud9491.t1 ID=Gcaud9491.t1|Name=Gcaud9491.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=179bp
MFVTAFCSCTPAVKLSSRPSRTFTSRSRNLSLPSASTKESLSARGPRTPA
PDYSKIDSSPLNKLFTNIFRSKLETELGRGSAERGYAGVIDTVKQLAARH
RKDPEALQLASQRVLMSLFPPWLPEAFSKMFSKPIPSFAAWINAVVTVGV
TQWLMGPSKLAEDGVTVEIERCRYLEGS*

spliced messenger RNA

>Gcaud9491.t1 ID=Gcaud9491.t1|Name=Gcaud9491.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=537bp|location=Sequence derived from alignment at NODE_925_length_16085_cov_4.297049:13141..13677- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTGTCACAGCCTTTTGCTCATGCACGCCTGCTGTGAAGCTAAGTTC
CAGACCTTCACGAACCTTTACGTCCAGGAGCAGAAACCTTAGTCTACCTT
CAGCTTCTACCAAAGAATCTCTCTCTGCAAGGGGACCTCGAACGCCTGCT
CCTGATTACAGCAAGATAGATTCCAGCCCACTGAATAAGTTGTTTACAAA
CATTTTTCGTTCCAAGCTGGAAACAGAGCTTGGTCGTGGTTCGGCTGAAA
GGGGATACGCTGGTGTGATTGATACAGTTAAGCAACTAGCGGCAAGACAT
CGAAAGGATCCTGAAGCATTACAACTGGCATCGCAACGGGTTCTTATGTC
ACTATTTCCGCCATGGTTGCCTGAAGCGTTTTCAAAGATGTTCTCGAAGC
CGATTCCAAGCTTCGCAGCATGGATAAATGCTGTGGTAACGGTTGGAGTA
ACGCAGTGGCTCATGGGGCCTTCAAAACTGGCTGAAGATGGAGTTACTGT
GGAAATTGAGCGTTGCCGATACTTAGAAGGTTCGTGA

protein sequence of Gcaud9491.t1

>Gcaud9491.t1 ID=Gcaud9491.t1|Name=Gcaud9491.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=179bp
MFVTAFCSCTPAVKLSSRPSRTFTSRSRNLSLPSASTKESLSARGPRTPA
PDYSKIDSSPLNKLFTNIFRSKLETELGRGSAERGYAGVIDTVKQLAARH
RKDPEALQLASQRVLMSLFPPWLPEAFSKMFSKPIPSFAAWINAVVTVGV
TQWLMGPSKLAEDGVTVEIERCRYLEGS*

mRNA from alignment at NODE_925_length_16085_cov_4.297049:13141..13677-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9491.t1 ID=Gcaud9491.t1|Name=Gcaud9491.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=537bp|location=Sequence derived from alignment at NODE_925_length_16085_cov_4.297049:13141..13677- (Gracilaria caudata M_176_S67 male)
ATGTTTGTCACAGCCTTTTGCTCATGCACGCCTGCTGTGAAGCTAAGTTC
CAGACCTTCACGAACCTTTACGTCCAGGAGCAGAAACCTTAGTCTACCTT
CAGCTTCTACCAAAGAATCTCTCTCTGCAAGGGGACCTCGAACGCCTGCT
CCTGATTACAGCAAGATAGATTCCAGCCCACTGAATAAGTTGTTTACAAA
CATTTTTCGTTCCAAGCTGGAAACAGAGCTTGGTCGTGGTTCGGCTGAAA
GGGGATACGCTGGTGTGATTGATACAGTTAAGCAACTAGCGGCAAGACAT
CGAAAGGATCCTGAAGCATTACAACTGGCATCGCAACGGGTTCTTATGTC
ACTATTTCCGCCATGGTTGCCTGAAGCGTTTTCAAAGATGTTCTCGAAGC
CGATTCCAAGCTTCGCAGCATGGATAAATGCTGTGGTAACGGTTGGAGTA
ACGCAGTGGCTCATGGGGCCTTCAAAACTGGCTGAAGATGGAGTTACTGT
GGAAATTGAGCGTTGCCGATACTTAGAAGGTTCGTGA

Coding sequence (CDS) from alignment at NODE_925_length_16085_cov_4.297049:13141..13677-

>Gcaud9491.t1 ID=Gcaud9491.t1|Name=Gcaud9491.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=537bp|location=Sequence derived from alignment at NODE_925_length_16085_cov_4.297049:13141..13677- (Gracilaria caudata M_176_S67 male)
ATGTTTGTCACAGCCTTTTGCTCATGCACGCCTGCTGTGAAGCTAAGTTC
CAGACCTTCACGAACCTTTACGTCCAGGAGCAGAAACCTTAGTCTACCTT
CAGCTTCTACCAAAGAATCTCTCTCTGCAAGGGGACCTCGAACGCCTGCT
CCTGATTACAGCAAGATAGATTCCAGCCCACTGAATAAGTTGTTTACAAA
CATTTTTCGTTCCAAGCTGGAAACAGAGCTTGGTCGTGGTTCGGCTGAAA
GGGGATACGCTGGTGTGATTGATACAGTTAAGCAACTAGCGGCAAGACAT
CGAAAGGATCCTGAAGCATTACAACTGGCATCGCAACGGGTTCTTATGTC
ACTATTTCCGCCATGGTTGCCTGAAGCGTTTTCAAAGATGTTCTCGAAGC
CGATTCCAAGCTTCGCAGCATGGATAAATGCTGTGGTAACGGTTGGAGTA
ACGCAGTGGCTCATGGGGCCTTCAAAACTGGCTGAAGATGGAGTTACTGT
GGAAATTGAGCGTTGCCGATACTTAGAAGGTTCGTGA