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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005708927.1 |
| PFAMs | CTD_bind |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K12879,ko:K14400 |
| KEGG Pathway | ko03013,ko03015,ko03040,map03013,map03015,map03040 |
| KEGG Module | M00405,M00406 |
| Evalue | 4.7e-32 |
| EggNOG OGs | KOG2071@1|root,KOG2071@2759|Eukaryota |
| Description | termination of RNA polymerase II transcription |
| COG category | S |
| BRITE | ko00000,ko00001,ko00002,ko03019,ko03021,ko03041 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud9341.t1.stop1 | Gcaud9341.t1.stop1 | Gracilaria caudata M_176_S67 male | stop_codon | NODE_2230_length_6369_cov_3.430870 3831..3833 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Gcaud9341.t1.start1 | Gcaud9341.t1.start1 | Gracilaria caudata M_176_S67 male | start_codon | NODE_2230_length_6369_cov_3.430870 6333..6335 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gcaud9341.t1 ID=Gcaud9341.t1|Name=Gcaud9341.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=835bp LQAAAIEYDAFLNDLTWNSKQVINQLTTIAAENIPAADAISSVIEQRIFN ATPSMKLPFLYLMDSIVKNVGRRYLSRFAENLFHTFTNAYTVAPPTVRMS LRRMLGTWPDIYGFELVNAMTARADQCDATPYNALHTPHAPHPPAVRMPS QQAPHPPAVRMPSQQAPPYFAQQQRAPMPHHAPEPRPQPPIPSLRSQPIR PAATAVAAAAAAAAAPPVAAPASQLPHGAGRGLPMRPPAMHSSQPPPPAV IPPPAVMPPPPQEFVELERMMTQVIRNASMGTLPSNHQLFTLNRMITTQL QSSATHLQRSALLRYQQQLREISSAPRHRAAPAPKTSHINVPPSAPPSSS QVPGPHVSATLTNLLRAMPPGLLHTVQSVAQSSRPLPSASVGALPSPAAM PRPSGVPRRLPDTAGPSYSAPSSSSSTVLTFAELKGMSHHAGVRSLYTDL PYLSKSDGMRFATKEALREHLDWLFRQNRRKRGTKEQVVVGGQSRGWFDT LDVFLGNVDPNAKPINPSVNKNTVADENDDRTVSVVESKSDNDICAACHE AFETFWDDDKHAWMLRDCTKTDDDELYHVKCMQYAVLADDESADASARQP PEDETPKAENEISDTALTSTNNKPLETQTNTNCDTPQKGAITAADTAALT PTIKEEAQRAVHNSFNASMVSQMNISKAEPNMISVGNQGLNHVQTAASYV MPPKQEPHLAARADVMHNRSMAPLTALNMVSPGSVGGADVKGKVIISKVP KWLASTTGIKVMHLEPARKEEARMMVATSPPSGQKRRRCETEAEAVDVNN YRTTFAAPSVATTSEEAGEPQSKRQKECSAQTNS* back to topspliced messenger RNA >Gcaud9341.t1 ID=Gcaud9341.t1|Name=Gcaud9341.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2505bp|location=Sequence derived from alignment at NODE_2230_length_6369_cov_3.430870:3831..6335- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.
TTGCAGGCCGCCGCCATCGAGTACGACGCATTCCTCAATGACCTTACTTG GAACTCCAAGCAGGTCATCAACCAGCTCACCACCATCGCCGCCGAAAACA TCCCCGCTGCCGATGCCATCAGCTCGGTCATCGAGCAGCGCATTTTCAAC GCCACCCCATCGATGAAGCTTCCATTCCTCTATCTCATGGATTCCATCGT CAAGAACGTCGGCCGAAGATATCTCTCGCGTTTCGCAGAGAACCTGTTCC ACACCTTCACCAACGCCTACACCGTGGCGCCCCCTACCGTGCGCATGTCG CTGCGAAGAATGCTCGGCACATGGCCGGATATCTATGGCTTCGAGCTTGT CAACGCCATGACAGCTCGAGCCGATCAGTGCGACGCCACGCCGTACAACG CGCTGCACACGCCCCATGCGCCGCATCCGCCTGCCGTGCGCATGCCGTCG CAGCAAGCGCCGCATCCGCCTGCCGTGCGCATGCCGTCGCAGCAAGCGCC GCCGTATTTTGCGCAGCAGCAACGCGCGCCCATGCCGCACCATGCGCCCG AGCCGCGCCCGCAGCCGCCCATACCGTCGCTTCGTTCGCAGCCCATTCGC CCAGCCGCCACCGCCGTCGCCGCCGCCGCCGCCGCCGCCGCCGCCCCCCC TGTCGCCGCGCCCGCTTCTCAACTGCCCCATGGTGCTGGAAGGGGCTTAC CGATGCGCCCGCCCGCAATGCATTCAAGTCAGCCGCCGCCGCCCGCCGTC ATACCGCCGCCCGCCGTCATGCCGCCGCCGCCGCAGGAATTCGTGGAGCT GGAAAGGATGATGACACAGGTAATTAGAAATGCTAGCATGGGAACTCTCC CATCAAACCACCAGTTGTTTACTCTCAACAGGATGATTACCACACAGCTC CAATCCTCTGCCACCCATCTACAGCGAAGCGCGCTACTGCGTTACCAGCA ACAGCTGCGCGAAATCTCTTCCGCCCCTCGTCACCGCGCTGCGCCTGCCC CCAAAACTTCTCACATCAACGTCCCCCCTTCTGCGCCCCCTTCTTCCTCG CAAGTCCCGGGTCCGCACGTTTCGGCCACCCTTACCAATTTACTTCGCGC AATGCCCCCAGGACTGCTTCACACAGTGCAGTCTGTAGCACAATCGTCTC GCCCTCTTCCTTCCGCCAGTGTGGGCGCTCTTCCTTCCCCAGCGGCTATG CCCCGACCGTCGGGAGTGCCTCGACGCCTCCCAGACACCGCTGGTCCGTC GTATTCAGCGCCTTCTTCTTCTTCTTCCACCGTGCTAACGTTTGCCGAGC TCAAGGGCATGTCTCATCACGCGGGCGTCCGATCTTTGTACACCGACTTG CCATATCTTTCCAAGAGCGATGGCATGCGATTCGCCACCAAGGAGGCGTT GCGAGAACATCTTGACTGGCTTTTCCGACAGAATCGTCGCAAGAGGGGAA CGAAGGAACAGGTGGTTGTGGGTGGTCAATCTCGCGGTTGGTTTGACACT TTGGACGTCTTCCTTGGCAACGTCGACCCTAACGCCAAACCAATCAACCC CTCTGTAAATAAGAATACTGTAGCAGACGAAAACGACGATAGAACCGTGT CTGTTGTTGAGTCAAAGTCTGACAATGATATATGCGCCGCTTGCCATGAG GCGTTTGAAACGTTTTGGGACGACGACAAACACGCCTGGATGTTGCGTGA CTGCACCAAGACTGACGACGACGAGCTGTATCACGTAAAGTGCATGCAAT ACGCAGTTCTCGCTGATGATGAATCGGCGGATGCGTCGGCTCGCCAACCG CCGGAGGACGAAACGCCGAAGGCCGAGAATGAGATATCAGACACTGCACT AACAAGTACGAACAACAAGCCATTGGAAACGCAAACTAACACTAACTGTG ACACACCACAAAAGGGCGCAATAACAGCTGCTGATACTGCAGCGCTTACT CCAACCATCAAAGAAGAAGCGCAACGGGCTGTTCACAATTCTTTCAATGC AAGCATGGTGTCTCAGATGAACATCTCGAAAGCTGAACCTAACATGATTT CAGTCGGCAATCAAGGGCTTAACCATGTACAGACAGCAGCGAGCTACGTT ATGCCACCGAAACAGGAACCGCATTTGGCTGCGCGCGCTGACGTGATGCA CAATCGCTCTATGGCTCCCCTGACAGCGTTGAACATGGTGTCTCCGGGCT CGGTGGGTGGGGCGGACGTGAAGGGCAAGGTGATCATTTCCAAGGTACCA AAGTGGCTTGCATCGACAACTGGTATAAAGGTTATGCATTTGGAACCGGC CAGGAAGGAAGAAGCCAGAATGATGGTGGCGACTTCACCCCCTTCTGGGC AGAAGAGAAGGAGATGCGAAACTGAAGCTGAAGCTGTGGATGTGAACAAC TACAGAACTACGTTCGCAGCGCCATCTGTGGCGACGACGAGTGAGGAGGC GGGCGAGCCTCAGTCAAAGCGTCAAAAGGAGTGCAGTGCACAAACAAACA GCTGA back to topprotein sequence of Gcaud9341.t1 >Gcaud9341.t1 ID=Gcaud9341.t1|Name=Gcaud9341.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=835bp
LQAAAIEYDAFLNDLTWNSKQVINQLTTIAAENIPAADAISSVIEQRIFN ATPSMKLPFLYLMDSIVKNVGRRYLSRFAENLFHTFTNAYTVAPPTVRMS LRRMLGTWPDIYGFELVNAMTARADQCDATPYNALHTPHAPHPPAVRMPS QQAPHPPAVRMPSQQAPPYFAQQQRAPMPHHAPEPRPQPPIPSLRSQPIR PAATAVAAAAAAAAAPPVAAPASQLPHGAGRGLPMRPPAMHSSQPPPPAV IPPPAVMPPPPQEFVELERMMTQVIRNASMGTLPSNHQLFTLNRMITTQL QSSATHLQRSALLRYQQQLREISSAPRHRAAPAPKTSHINVPPSAPPSSS QVPGPHVSATLTNLLRAMPPGLLHTVQSVAQSSRPLPSASVGALPSPAAM PRPSGVPRRLPDTAGPSYSAPSSSSSTVLTFAELKGMSHHAGVRSLYTDL PYLSKSDGMRFATKEALREHLDWLFRQNRRKRGTKEQVVVGGQSRGWFDT LDVFLGNVDPNAKPINPSVNKNTVADENDDRTVSVVESKSDNDICAACHE AFETFWDDDKHAWMLRDCTKTDDDELYHVKCMQYAVLADDESADASARQP PEDETPKAENEISDTALTSTNNKPLETQTNTNCDTPQKGAITAADTAALT PTIKEEAQRAVHNSFNASMVSQMNISKAEPNMISVGNQGLNHVQTAASYV MPPKQEPHLAARADVMHNRSMAPLTALNMVSPGSVGGADVKGKVIISKVP KWLASTTGIKVMHLEPARKEEARMMVATSPPSGQKRRRCETEAEAVDVNN YRTTFAAPSVATTSEEAGEPQSKRQKECSAQTNS* back to topmRNA from alignment at NODE_2230_length_6369_cov_3.430870:3831..6335- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gcaud9341.t1 ID=Gcaud9341.t1|Name=Gcaud9341.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2505bp|location=Sequence derived from alignment at NODE_2230_length_6369_cov_3.430870:3831..6335- (Gracilaria caudata M_176_S67 male) TTGCAGGCCGCCGCCATCGAGTACGACGCATTCCTCAATGACCTTACTTG
GAACTCCAAGCAGGTCATCAACCAGCTCACCACCATCGCCGCCGAAAACA
TCCCCGCTGCCGATGCCATCAGCTCGGTCATCGAGCAGCGCATTTTCAAC
GCCACCCCATCGATGAAGCTTCCATTCCTCTATCTCATGGATTCCATCGT
CAAGAACGTCGGCCGAAGATATCTCTCGCGTTTCGCAGAGAACCTGTTCC
ACACCTTCACCAACGCCTACACCGTGGCGCCCCCTACCGTGCGCATGTCG
CTGCGAAGAATGCTCGGCACATGGCCGGATATCTATGGCTTCGAGCTTGT
CAACGCCATGACAGCTCGAGCCGATCAGTGCGACGCCACGCCGTACAACG
CGCTGCACACGCCCCATGCGCCGCATCCGCCTGCCGTGCGCATGCCGTCG
CAGCAAGCGCCGCATCCGCCTGCCGTGCGCATGCCGTCGCAGCAAGCGCC
GCCGTATTTTGCGCAGCAGCAACGCGCGCCCATGCCGCACCATGCGCCCG
AGCCGCGCCCGCAGCCGCCCATACCGTCGCTTCGTTCGCAGCCCATTCGC
CCAGCCGCCACCGCCGTCGCCGCCGCCGCCGCCGCCGCCGCCGCCCCCCC
TGTCGCCGCGCCCGCTTCTCAACTGCCCCATGGTGCTGGAAGGGGCTTAC
CGATGCGCCCGCCCGCAATGCATTCAAGTCAGCCGCCGCCGCCCGCCGTC
ATACCGCCGCCCGCCGTCATGCCGCCGCCGCCGCAGGAATTCGTGGAGCT
GGAAAGGATGATGACACAGGTAATTAGAAATGCTAGCATGGGAACTCTCC
CATCAAACCACCAGTTGTTTACTCTCAACAGGATGATTACCACACAGCTC
CAATCCTCTGCCACCCATCTACAGCGAAGCGCGCTACTGCGTTACCAGCA
ACAGCTGCGCGAAATCTCTTCCGCCCCTCGTCACCGCGCTGCGCCTGCCC
CCAAAACTTCTCACATCAACGTCCCCCCTTCTGCGCCCCCTTCTTCCTCG
CAAGTCCCGGGTCCGCACGTTTCGGCCACCCTTACCAATTTACTTCGCGC
AATGCCCCCAGGACTGCTTCACACAGTGCAGTCTGTAGCACAATCGTCTC
GCCCTCTTCCTTCCGCCAGTGTGGGCGCTCTTCCTTCCCCAGCGGCTATG
CCCCGACCGTCGGGAGTGCCTCGACGCCTCCCAGACACCGCTGGTCCGTC
GTATTCAGCGCCTTCTTCTTCTTCTTCCACCGTGCTAACGTTTGCCGAGC
TCAAGGGCATGTCTCATCACGCGGGCGTCCGATCTTTGTACACCGACTTG
CCATATCTTTCCAAGAGCGATGGCATGCGATTCGCCACCAAGGAGGCGTT
GCGAGAACATCTTGACTGGCTTTTCCGACAGAATCGTCGCAAGAGGGGAA
CGAAGGAACAGGTGGTTGTGGGTGGTCAATCTCGCGGTTGGTTTGACACT
TTGGACGTCTTCCTTGGCAACGTCGACCCTAACGCCAAACCAATCAACCC
CTCTGTAAATAAGAATACTGTAGCAGACGAAAACGACGATAGAACCGTGT
CTGTTGTTGAGTCAAAGTCTGACAATGATATATGCGCCGCTTGCCATGAG
GCGTTTGAAACGTTTTGGGACGACGACAAACACGCCTGGATGTTGCGTGA
CTGCACCAAGACTGACGACGACGAGCTGTATCACGTAAAGTGCATGCAAT
ACGCAGTTCTCGCTGATGATGAATCGGCGGATGCGTCGGCTCGCCAACCG
CCGGAGGACGAAACGCCGAAGGCCGAGAATGAGATATCAGACACTGCACT
AACAAGTACGAACAACAAGCCATTGGAAACGCAAACTAACACTAACTGTG
ACACACCACAAAAGGGCGCAATAACAGCTGCTGATACTGCAGCGCTTACT
CCAACCATCAAAGAAGAAGCGCAACGGGCTGTTCACAATTCTTTCAATGC
AAGCATGGTGTCTCAGATGAACATCTCGAAAGCTGAACCTAACATGATTT
CAGTCGGCAATCAAGGGCTTAACCATGTACAGACAGCAGCGAGCTACGTT
ATGCCACCGAAACAGGAACCGCATTTGGCTGCGCGCGCTGACGTGATGCA
CAATCGCTCTATGGCTCCCCTGACAGCGTTGAACATGGTGTCTCCGGGCT
CGGTGGGTGGGGCGGACGTGAAGGGCAAGGTGATCATTTCCAAGGTACCA
AAGTGGCTTGCATCGACAACTGGTATAAAGGTTATGCATTTGGAACCGGC
CAGGAAGGAAGAAGCCAGAATGATGGTGGCGACTTCACCCCCTTCTGGGC
AGAAGAGAAGGAGATGCGAAACTGAAGCTGAAGCTGTGGATGTGAACAAC
TACAGAACTACGTTCGCAGCGCCATCTGTGGCGACGACGAGTGAGGAGGC
GGGCGAGCCTCAGTCAAAGCGTCAAAAGGAGTGCAGTGCACAAACAAACA
GCTGA back to topCoding sequence (CDS) from alignment at NODE_2230_length_6369_cov_3.430870:3831..6335- >Gcaud9341.t1 ID=Gcaud9341.t1|Name=Gcaud9341.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2505bp|location=Sequence derived from alignment at NODE_2230_length_6369_cov_3.430870:3831..6335- (Gracilaria caudata M_176_S67 male) TTGCAGGCCGCCGCCATCGAGTACGACGCATTCCTCAATGACCTTACTTG GAACTCCAAGCAGGTCATCAACCAGCTCACCACCATCGCCGCCGAAAACA TCCCCGCTGCCGATGCCATCAGCTCGGTCATCGAGCAGCGCATTTTCAAC GCCACCCCATCGATGAAGCTTCCATTCCTCTATCTCATGGATTCCATCGT CAAGAACGTCGGCCGAAGATATCTCTCGCGTTTCGCAGAGAACCTGTTCC ACACCTTCACCAACGCCTACACCGTGGCGCCCCCTACCGTGCGCATGTCG CTGCGAAGAATGCTCGGCACATGGCCGGATATCTATGGCTTCGAGCTTGT CAACGCCATGACAGCTCGAGCCGATCAGTGCGACGCCACGCCGTACAACG CGCTGCACACGCCCCATGCGCCGCATCCGCCTGCCGTGCGCATGCCGTCG CAGCAAGCGCCGCATCCGCCTGCCGTGCGCATGCCGTCGCAGCAAGCGCC GCCGTATTTTGCGCAGCAGCAACGCGCGCCCATGCCGCACCATGCGCCCG AGCCGCGCCCGCAGCCGCCCATACCGTCGCTTCGTTCGCAGCCCATTCGC CCAGCCGCCACCGCCGTCGCCGCCGCCGCCGCCGCCGCCGCCGCCCCCCC TGTCGCCGCGCCCGCTTCTCAACTGCCCCATGGTGCTGGAAGGGGCTTAC CGATGCGCCCGCCCGCAATGCATTCAAGTCAGCCGCCGCCGCCCGCCGTC ATACCGCCGCCCGCCGTCATGCCGCCGCCGCCGCAGGAATTCGTGGAGCT GGAAAGGATGATGACACAGGTAATTAGAAATGCTAGCATGGGAACTCTCC CATCAAACCACCAGTTGTTTACTCTCAACAGGATGATTACCACACAGCTC CAATCCTCTGCCACCCATCTACAGCGAAGCGCGCTACTGCGTTACCAGCA ACAGCTGCGCGAAATCTCTTCCGCCCCTCGTCACCGCGCTGCGCCTGCCC CCAAAACTTCTCACATCAACGTCCCCCCTTCTGCGCCCCCTTCTTCCTCG CAAGTCCCGGGTCCGCACGTTTCGGCCACCCTTACCAATTTACTTCGCGC AATGCCCCCAGGACTGCTTCACACAGTGCAGTCTGTAGCACAATCGTCTC GCCCTCTTCCTTCCGCCAGTGTGGGCGCTCTTCCTTCCCCAGCGGCTATG CCCCGACCGTCGGGAGTGCCTCGACGCCTCCCAGACACCGCTGGTCCGTC GTATTCAGCGCCTTCTTCTTCTTCTTCCACCGTGCTAACGTTTGCCGAGC TCAAGGGCATGTCTCATCACGCGGGCGTCCGATCTTTGTACACCGACTTG CCATATCTTTCCAAGAGCGATGGCATGCGATTCGCCACCAAGGAGGCGTT GCGAGAACATCTTGACTGGCTTTTCCGACAGAATCGTCGCAAGAGGGGAA CGAAGGAACAGGTGGTTGTGGGTGGTCAATCTCGCGGTTGGTTTGACACT TTGGACGTCTTCCTTGGCAACGTCGACCCTAACGCCAAACCAATCAACCC CTCTGTAAATAAGAATACTGTAGCAGACGAAAACGACGATAGAACCGTGT CTGTTGTTGAGTCAAAGTCTGACAATGATATATGCGCCGCTTGCCATGAG GCGTTTGAAACGTTTTGGGACGACGACAAACACGCCTGGATGTTGCGTGA CTGCACCAAGACTGACGACGACGAGCTGTATCACGTAAAGTGCATGCAAT ACGCAGTTCTCGCTGATGATGAATCGGCGGATGCGTCGGCTCGCCAACCG CCGGAGGACGAAACGCCGAAGGCCGAGAATGAGATATCAGACACTGCACT AACAAGTACGAACAACAAGCCATTGGAAACGCAAACTAACACTAACTGTG ACACACCACAAAAGGGCGCAATAACAGCTGCTGATACTGCAGCGCTTACT CCAACCATCAAAGAAGAAGCGCAACGGGCTGTTCACAATTCTTTCAATGC AAGCATGGTGTCTCAGATGAACATCTCGAAAGCTGAACCTAACATGATTT CAGTCGGCAATCAAGGGCTTAACCATGTACAGACAGCAGCGAGCTACGTT ATGCCACCGAAACAGGAACCGCATTTGGCTGCGCGCGCTGACGTGATGCA CAATCGCTCTATGGCTCCCCTGACAGCGTTGAACATGGTGTCTCCGGGCT CGGTGGGTGGGGCGGACGTGAAGGGCAAGGTGATCATTTCCAAGGTACCA AAGTGGCTTGCATCGACAACTGGTATAAAGGTTATGCATTTGGAACCGGC CAGGAAGGAAGAAGCCAGAATGATGGTGGCGACTTCACCCCCTTCTGGGC AGAAGAGAAGGAGATGCGAAACTGAAGCTGAAGCTGTGGATGTGAACAAC TACAGAACTACGTTCGCAGCGCCATCTGTGGCGACGACGAGTGAGGAGGC GGGCGAGCCTCAGTCAAAGCGTCAAAAGGAGTGCAGTGCACAAACAAACA GCTGA back to top
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