Gcaud9335.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9335.t1
Unique Name	Gcaud9335.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	331

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_199_length_38196_cov_4.525364	contig	NODE_199_length_38196_cov_4.525364:1344..2336 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	15368.BRADI3G47380.1
PFAMs	Pkinase
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K08853
GOs	GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0030100,GO:0032879,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0051049,GO:0051128,GO:0060627,GO:0065007,GO:0071704,GO:0140096,GO:1901564
Evalue	1.05e-15
EggNOG OGs	KOG1989@1\|root,KOG1989@2759\|Eukaryota,37RK6@33090\|Viridiplantae,3GB96@35493\|Streptophyta,3KNT4@4447\|Liliopsida,3IEZA@38820\|Poales
EC	2.7.11.1
Description	Protein kinase domain
COG category	T
BRITE	ko00000,ko01000,ko01001,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9335	Gcaud9335	Gracilaria caudata M_176_S67 male	gene	NODE_199_length_38196_cov_4.525364 1344..2987 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9335.t1.stop1	Gcaud9335.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_199_length_38196_cov_4.525364 1344..1346 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9335.t1.CDS1	Gcaud9335.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_199_length_38196_cov_4.525364 1344..2336 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9335.t1.exon1	Gcaud9335.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_199_length_38196_cov_4.525364 1344..2336 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9335.t1.start1	Gcaud9335.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_199_length_38196_cov_4.525364 2334..2336 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9335.t1	Gcaud9335.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_199_length_38196_cov_4.525364 1344..2336 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_199_length_38196_cov_4.525364:1344..2336-
coding sequence from alignment at NODE_199_length_38196_cov_4.525364:1344..2336-

mRNA sequence

>Gcaud9335.t1 ID=Gcaud9335.t1|Name=Gcaud9335.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=331bp
MYRAPELVDLYSEQLICERADVWSLGCIWYALLFGSLPFDGSSSLQITKG
LVNVPTQSAYPPEFVSLLKNMLVVDPAHRFDSFQVLEQVNQILGRQVDQQ
VMDVGSELRARRCADFGVNTNPEYSGTALPVNETSVSASAQRLPQSLLGD
FDELLSVSERQHVKPISAVSEPKAKSSGMDNSGWADFDSAFGKPKVGSTP
HKVFTSTSQGRTTEWAMSGFDDVPPPARSPTAAIPQRTAAVRPGGSFESS
VLGLSLGQNVTVPKSPAPVSAVSQQGQTTMPSLIDFSDVTRSSKVSERQQ
ASVLVATVQQQGEKNESGKAANFEDLIDFG*

spliced messenger RNA

>Gcaud9335.t1 ID=Gcaud9335.t1|Name=Gcaud9335.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=993bp|location=Sequence derived from alignment at NODE_199_length_38196_cov_4.525364:1344..2336- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTATCGAGCACCAGAACTGGTTGATTTGTACTCCGAACAGCTCATCTG
CGAACGTGCTGATGTGTGGTCTTTGGGTTGCATATGGTACGCGCTCTTGT
TTGGTTCGCTACCATTTGATGGCTCTTCGTCATTACAGATCACAAAGGGC
TTGGTCAATGTCCCTACCCAATCAGCATATCCGCCTGAATTCGTATCTCT
GCTGAAGAATATGCTGGTTGTTGATCCCGCGCACCGCTTTGATTCATTCC
AGGTTTTGGAGCAGGTGAATCAAATTCTCGGCCGACAAGTCGACCAACAA
GTTATGGACGTTGGAAGCGAACTCCGAGCGAGACGTTGTGCTGACTTTGG
CGTCAATACCAACCCTGAGTATTCGGGAACTGCTTTGCCTGTCAATGAGA
CCTCCGTGTCAGCTTCTGCACAGCGCTTACCGCAATCACTGCTAGGAGAC
TTTGATGAGCTGTTGTCTGTTTCTGAGCGTCAGCACGTGAAGCCTATTAG
TGCTGTTTCAGAGCCCAAGGCAAAGTCGAGTGGTATGGACAACAGCGGCT
GGGCAGACTTTGATTCCGCTTTTGGCAAGCCAAAGGTGGGCTCGACCCCG
CACAAAGTTTTCACGTCGACCTCACAAGGGCGCACCACAGAATGGGCGAT
GTCTGGTTTTGACGACGTTCCTCCTCCTGCTCGCAGCCCAACTGCGGCTA
TTCCGCAAAGGACTGCCGCTGTAAGGCCGGGAGGTTCGTTCGAGAGTAGT
GTGTTAGGCCTTTCATTGGGTCAGAACGTGACTGTTCCGAAGAGTCCGGC
TCCAGTGTCCGCCGTGAGCCAACAAGGACAGACTACAATGCCGTCTCTAA
TAGATTTTTCAGATGTAACGCGGTCCTCGAAGGTATCTGAAAGACAACAA
GCATCTGTTCTGGTTGCTACTGTGCAACAACAGGGGGAGAAGAATGAGAG
TGGAAAGGCGGCAAACTTTGAGGACCTAATTGATTTTGGATGA

protein sequence of Gcaud9335.t1

>Gcaud9335.t1 ID=Gcaud9335.t1|Name=Gcaud9335.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=331bp
MYRAPELVDLYSEQLICERADVWSLGCIWYALLFGSLPFDGSSSLQITKG
LVNVPTQSAYPPEFVSLLKNMLVVDPAHRFDSFQVLEQVNQILGRQVDQQ
VMDVGSELRARRCADFGVNTNPEYSGTALPVNETSVSASAQRLPQSLLGD
FDELLSVSERQHVKPISAVSEPKAKSSGMDNSGWADFDSAFGKPKVGSTP
HKVFTSTSQGRTTEWAMSGFDDVPPPARSPTAAIPQRTAAVRPGGSFESS
VLGLSLGQNVTVPKSPAPVSAVSQQGQTTMPSLIDFSDVTRSSKVSERQQ
ASVLVATVQQQGEKNESGKAANFEDLIDFG*

mRNA from alignment at NODE_199_length_38196_cov_4.525364:1344..2336-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9335.t1 ID=Gcaud9335.t1|Name=Gcaud9335.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=993bp|location=Sequence derived from alignment at NODE_199_length_38196_cov_4.525364:1344..2336- (Gracilaria caudata M_176_S67 male)
ATGTATCGAGCACCAGAACTGGTTGATTTGTACTCCGAACAGCTCATCTG
CGAACGTGCTGATGTGTGGTCTTTGGGTTGCATATGGTACGCGCTCTTGT
TTGGTTCGCTACCATTTGATGGCTCTTCGTCATTACAGATCACAAAGGGC
TTGGTCAATGTCCCTACCCAATCAGCATATCCGCCTGAATTCGTATCTCT
GCTGAAGAATATGCTGGTTGTTGATCCCGCGCACCGCTTTGATTCATTCC
AGGTTTTGGAGCAGGTGAATCAAATTCTCGGCCGACAAGTCGACCAACAA
GTTATGGACGTTGGAAGCGAACTCCGAGCGAGACGTTGTGCTGACTTTGG
CGTCAATACCAACCCTGAGTATTCGGGAACTGCTTTGCCTGTCAATGAGA
CCTCCGTGTCAGCTTCTGCACAGCGCTTACCGCAATCACTGCTAGGAGAC
TTTGATGAGCTGTTGTCTGTTTCTGAGCGTCAGCACGTGAAGCCTATTAG
TGCTGTTTCAGAGCCCAAGGCAAAGTCGAGTGGTATGGACAACAGCGGCT
GGGCAGACTTTGATTCCGCTTTTGGCAAGCCAAAGGTGGGCTCGACCCCG
CACAAAGTTTTCACGTCGACCTCACAAGGGCGCACCACAGAATGGGCGAT
GTCTGGTTTTGACGACGTTCCTCCTCCTGCTCGCAGCCCAACTGCGGCTA
TTCCGCAAAGGACTGCCGCTGTAAGGCCGGGAGGTTCGTTCGAGAGTAGT
GTGTTAGGCCTTTCATTGGGTCAGAACGTGACTGTTCCGAAGAGTCCGGC
TCCAGTGTCCGCCGTGAGCCAACAAGGACAGACTACAATGCCGTCTCTAA
TAGATTTTTCAGATGTAACGCGGTCCTCGAAGGTATCTGAAAGACAACAA
GCATCTGTTCTGGTTGCTACTGTGCAACAACAGGGGGAGAAGAATGAGAG
TGGAAAGGCGGCAAACTTTGAGGACCTAATTGATTTTGGATGA

Coding sequence (CDS) from alignment at NODE_199_length_38196_cov_4.525364:1344..2336-

>Gcaud9335.t1 ID=Gcaud9335.t1|Name=Gcaud9335.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=993bp|location=Sequence derived from alignment at NODE_199_length_38196_cov_4.525364:1344..2336- (Gracilaria caudata M_176_S67 male)
ATGTATCGAGCACCAGAACTGGTTGATTTGTACTCCGAACAGCTCATCTG
CGAACGTGCTGATGTGTGGTCTTTGGGTTGCATATGGTACGCGCTCTTGT
TTGGTTCGCTACCATTTGATGGCTCTTCGTCATTACAGATCACAAAGGGC
TTGGTCAATGTCCCTACCCAATCAGCATATCCGCCTGAATTCGTATCTCT
GCTGAAGAATATGCTGGTTGTTGATCCCGCGCACCGCTTTGATTCATTCC
AGGTTTTGGAGCAGGTGAATCAAATTCTCGGCCGACAAGTCGACCAACAA
GTTATGGACGTTGGAAGCGAACTCCGAGCGAGACGTTGTGCTGACTTTGG
CGTCAATACCAACCCTGAGTATTCGGGAACTGCTTTGCCTGTCAATGAGA
CCTCCGTGTCAGCTTCTGCACAGCGCTTACCGCAATCACTGCTAGGAGAC
TTTGATGAGCTGTTGTCTGTTTCTGAGCGTCAGCACGTGAAGCCTATTAG
TGCTGTTTCAGAGCCCAAGGCAAAGTCGAGTGGTATGGACAACAGCGGCT
GGGCAGACTTTGATTCCGCTTTTGGCAAGCCAAAGGTGGGCTCGACCCCG
CACAAAGTTTTCACGTCGACCTCACAAGGGCGCACCACAGAATGGGCGAT
GTCTGGTTTTGACGACGTTCCTCCTCCTGCTCGCAGCCCAACTGCGGCTA
TTCCGCAAAGGACTGCCGCTGTAAGGCCGGGAGGTTCGTTCGAGAGTAGT
GTGTTAGGCCTTTCATTGGGTCAGAACGTGACTGTTCCGAAGAGTCCGGC
TCCAGTGTCCGCCGTGAGCCAACAAGGACAGACTACAATGCCGTCTCTAA
TAGATTTTTCAGATGTAACGCGGTCCTCGAAGGTATCTGAAAGACAACAA
GCATCTGTTCTGGTTGCTACTGTGCAACAACAGGGGGAGAAGAATGAGAG
TGGAAAGGCGGCAAACTTTGAGGACCTAATTGATTTTGGATGA