Gcaud9333.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9333.t1
Unique NameGcaud9333.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length240
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2256_length_6289_cov_4.364472contigNODE_2256_length_6289_cov_4.364472:5327..6046 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1121946.AUAX01000019_gene7842
PFAMsAcetyltransf_1,Acetyltransf_10,Acetyltransf_7
Max annot lvl201174|Actinobacteria
Evalue1.01e-27
EggNOG OGsCOG0454@1|root,COG0456@2|Bacteria,2I9Y3@201174|Actinobacteria,4DFWP@85008|Micromonosporales
DescriptionAcetyltransferase (GNAT) domain
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9333Gcaud9333Gracilaria caudata M_176_S67 malegeneNODE_2256_length_6289_cov_4.364472 5327..6046 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9333.t1.start1Gcaud9333.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2256_length_6289_cov_4.364472 5327..5329 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9333.t1.CDS1Gcaud9333.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2256_length_6289_cov_4.364472 5327..6046 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9333.t1.exon1Gcaud9333.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2256_length_6289_cov_4.364472 5327..6046 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9333.t1.stop1Gcaud9333.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2256_length_6289_cov_4.364472 6044..6046 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9333.t1Gcaud9333.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2256_length_6289_cov_4.364472 5327..6046 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9333.t1 ID=Gcaud9333.t1|Name=Gcaud9333.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=240bp
MVEADTVHAGAAAAMGVVSSERVTERHRVRSVVQRQDIPRLADTLASAFE
HDPFFQYLYGAKVTDIYHKNHIFFSAVLRSELQRVPQHSTIHVSHDDGCV
AIWNHVGQWDYPESLDFLAAVFRVFGLRSLHVGNTINKLKQKHPTQPHMF
LSVLGTHQQKQGKGSGSAVISEMLRQCDRDGTAVYVESSNERNVPFYQRH
GFRLMHHIAGLPRDCPPIAALWREPQSPPKIKSPVEAVL*
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spliced messenger RNA

>Gcaud9333.t1 ID=Gcaud9333.t1|Name=Gcaud9333.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=720bp|location=Sequence derived from alignment at NODE_2256_length_6289_cov_4.364472:5327..6046+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGAAGCCGATACCGTGCACGCCGGTGCCGCTGCCGCCATGGGCGT
CGTCAGCTCCGAACGCGTGACTGAACGCCACCGCGTGCGTTCCGTCGTGC
AGCGGCAAGACATCCCGCGTCTCGCCGACACGCTAGCTTCCGCGTTTGAG
CACGACCCGTTTTTCCAGTATCTGTACGGTGCCAAGGTCACCGACATCTA
CCACAAAAACCACATCTTCTTCTCCGCCGTGCTGCGCTCCGAGCTGCAGC
GTGTGCCGCAGCACAGCACCATTCACGTGTCGCACGACGACGGTTGCGTG
GCGATTTGGAACCACGTCGGTCAATGGGACTACCCCGAATCGTTGGACTT
TCTCGCCGCGGTATTTCGCGTGTTCGGACTGCGTTCGCTTCACGTCGGCA
ACACCATCAACAAACTGAAACAGAAGCACCCCACGCAACCGCACATGTTC
CTGTCCGTGCTCGGCACCCACCAGCAAAAGCAAGGAAAGGGCAGCGGAAG
CGCAGTCATCTCCGAAATGCTTCGCCAGTGCGACCGCGATGGAACGGCGG
TGTACGTGGAGTCGTCCAACGAGCGCAACGTCCCGTTCTACCAGCGGCAC
GGCTTCCGGCTGATGCACCACATCGCCGGGCTGCCGCGCGACTGCCCGCC
CATCGCCGCGCTGTGGCGAGAGCCGCAGTCGCCCCCCAAAATAAAATCTC
CAGTGGAGGCTGTACTGTAA
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protein sequence of Gcaud9333.t1

>Gcaud9333.t1 ID=Gcaud9333.t1|Name=Gcaud9333.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=240bp
MVEADTVHAGAAAAMGVVSSERVTERHRVRSVVQRQDIPRLADTLASAFE
HDPFFQYLYGAKVTDIYHKNHIFFSAVLRSELQRVPQHSTIHVSHDDGCV
AIWNHVGQWDYPESLDFLAAVFRVFGLRSLHVGNTINKLKQKHPTQPHMF
LSVLGTHQQKQGKGSGSAVISEMLRQCDRDGTAVYVESSNERNVPFYQRH
GFRLMHHIAGLPRDCPPIAALWREPQSPPKIKSPVEAVL*
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mRNA from alignment at NODE_2256_length_6289_cov_4.364472:5327..6046+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9333.t1 ID=Gcaud9333.t1|Name=Gcaud9333.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=720bp|location=Sequence derived from alignment at NODE_2256_length_6289_cov_4.364472:5327..6046+ (Gracilaria caudata M_176_S67 male)
ATGGTTGAAGCCGATACCGTGCACGCCGGTGCCGCTGCCGCCATGGGCGT
CGTCAGCTCCGAACGCGTGACTGAACGCCACCGCGTGCGTTCCGTCGTGC
AGCGGCAAGACATCCCGCGTCTCGCCGACACGCTAGCTTCCGCGTTTGAG
CACGACCCGTTTTTCCAGTATCTGTACGGTGCCAAGGTCACCGACATCTA
CCACAAAAACCACATCTTCTTCTCCGCCGTGCTGCGCTCCGAGCTGCAGC
GTGTGCCGCAGCACAGCACCATTCACGTGTCGCACGACGACGGTTGCGTG
GCGATTTGGAACCACGTCGGTCAATGGGACTACCCCGAATCGTTGGACTT
TCTCGCCGCGGTATTTCGCGTGTTCGGACTGCGTTCGCTTCACGTCGGCA
ACACCATCAACAAACTGAAACAGAAGCACCCCACGCAACCGCACATGTTC
CTGTCCGTGCTCGGCACCCACCAGCAAAAGCAAGGAAAGGGCAGCGGAAG
CGCAGTCATCTCCGAAATGCTTCGCCAGTGCGACCGCGATGGAACGGCGG
TGTACGTGGAGTCGTCCAACGAGCGCAACGTCCCGTTCTACCAGCGGCAC
GGCTTCCGGCTGATGCACCACATCGCCGGGCTGCCGCGCGACTGCCCGCC
CATCGCCGCGCTGTGGCGAGAGCCGCAGTCGCCCCCCAAAATAAAATCTC
CAGTGGAGGCTGTACTGTAA
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Coding sequence (CDS) from alignment at NODE_2256_length_6289_cov_4.364472:5327..6046+

>Gcaud9333.t1 ID=Gcaud9333.t1|Name=Gcaud9333.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=720bp|location=Sequence derived from alignment at NODE_2256_length_6289_cov_4.364472:5327..6046+ (Gracilaria caudata M_176_S67 male)
ATGGTTGAAGCCGATACCGTGCACGCCGGTGCCGCTGCCGCCATGGGCGT
CGTCAGCTCCGAACGCGTGACTGAACGCCACCGCGTGCGTTCCGTCGTGC
AGCGGCAAGACATCCCGCGTCTCGCCGACACGCTAGCTTCCGCGTTTGAG
CACGACCCGTTTTTCCAGTATCTGTACGGTGCCAAGGTCACCGACATCTA
CCACAAAAACCACATCTTCTTCTCCGCCGTGCTGCGCTCCGAGCTGCAGC
GTGTGCCGCAGCACAGCACCATTCACGTGTCGCACGACGACGGTTGCGTG
GCGATTTGGAACCACGTCGGTCAATGGGACTACCCCGAATCGTTGGACTT
TCTCGCCGCGGTATTTCGCGTGTTCGGACTGCGTTCGCTTCACGTCGGCA
ACACCATCAACAAACTGAAACAGAAGCACCCCACGCAACCGCACATGTTC
CTGTCCGTGCTCGGCACCCACCAGCAAAAGCAAGGAAAGGGCAGCGGAAG
CGCAGTCATCTCCGAAATGCTTCGCCAGTGCGACCGCGATGGAACGGCGG
TGTACGTGGAGTCGTCCAACGAGCGCAACGTCCCGTTCTACCAGCGGCAC
GGCTTCCGGCTGATGCACCACATCGCCGGGCTGCCGCGCGACTGCCCGCC
CATCGCCGCGCTGTGGCGAGAGCCGCAGTCGCCCCCCAAAATAAAATCTC
CAGTGGAGGCTGTACTGTAA
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