Gcaud9327.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9327.t1
Unique Name	Gcaud9327.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	504

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_989_length_15443_cov_4.322564	contig	NODE_989_length_15443_cov_4.322564:698..2209 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1906.SFRA_06005
PFAMs	PAP2
Max annot lvl	201174\|Actinobacteria
Evalue	2.17e-42
EggNOG OGs	COG2931@1\|root,COG2931@2\|Bacteria,2GK1B@201174\|Actinobacteria
Description	calcium- and calmodulin-responsive adenylate cyclase activity
COG category	Q

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9327	Gcaud9327	Gracilaria caudata M_176_S67 male	gene	NODE_989_length_15443_cov_4.322564 698..2209 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9327.t1.stop1	Gcaud9327.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_989_length_15443_cov_4.322564 698..700 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9327.t1.CDS1	Gcaud9327.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_989_length_15443_cov_4.322564 698..2209 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9327.t1.exon1	Gcaud9327.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_989_length_15443_cov_4.322564 698..2209 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9327.t1.start1	Gcaud9327.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_989_length_15443_cov_4.322564 2207..2209 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9327.t1	Gcaud9327.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_989_length_15443_cov_4.322564 698..2209 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_989_length_15443_cov_4.322564:698..2209-
coding sequence from alignment at NODE_989_length_15443_cov_4.322564:698..2209-

mRNA sequence

>Gcaud9327.t1 ID=Gcaud9327.t1|Name=Gcaud9327.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=504bp
MPPLLLLPLISALFLPASVQTRAESLAEQLFLDFLPLNDAAAALTPPRLL
FAETPIVVRYTLIGGAAIYDARAACEPLALSFFGTNDTVPRSFCQPDNNA
ILASYTTYRALLREFPVEMRGYADFLRRNNLEPVSSSRNPSTLNGWANLA
GDRLADFFQNDGWNSLGDRSRQTGRVPFEDFTRYRPVNSPYDAPLELAKP
LRWVPDQLDLGNGRLAHQIHVVPQLAVAVSPLIVSAAQASKRKVGRPFRK
RNSRRIDYRDRRVAERLVNEVLDAAASLTPQQRFYARWWDNKLLSTGGIS
AFYETAARLNAFQVAQQFLGEMLSQHDALVLTWREKRRHDLVRPVALIKN
LRRNQRFTSFISEEVGFGEVRAEDWRSLISAQPHSEFPSGSAALCTAAME
HIETYVRNKMGFVPSIKIRYTAGSLPFFLPEDTTVAFGSPLQAAANCARS
RLWAGVHFPPALPAGERIGRGIGRIVFEHMRELGEGRVPNNCTRCLAEGI
LGR*

spliced messenger RNA

>Gcaud9327.t1 ID=Gcaud9327.t1|Name=Gcaud9327.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1512bp|location=Sequence derived from alignment at NODE_989_length_15443_cov_4.322564:698..2209- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCCGTTGTTGTTATTACCGCTTATCTCCGCGTTGTTTCTGCCCGC
TTCTGTGCAGACGCGCGCCGAATCGTTGGCGGAACAGTTGTTCCTGGACT
TTTTACCGCTCAATGACGCGGCGGCTGCGCTTACGCCGCCGCGGTTGTTG
TTTGCGGAGACGCCCATTGTGGTGCGATACACTTTGATAGGTGGTGCCGC
AATCTACGACGCGAGAGCCGCCTGTGAACCGCTTGCGCTCTCGTTCTTCG
GTACCAATGACACCGTCCCACGGTCGTTCTGTCAACCTGATAACAATGCC
ATCCTCGCCTCCTACACCACCTATCGCGCGCTTCTTCGCGAGTTTCCCGT
CGAGATGCGCGGTTACGCCGACTTTCTGCGTCGCAACAACCTGGAACCGG
TGAGTTCGTCGCGGAATCCGTCCACACTCAACGGATGGGCCAATCTTGCC
GGTGATCGATTGGCCGATTTCTTTCAGAACGACGGTTGGAATTCGCTTGG
AGACCGTTCTCGACAGACCGGGCGCGTGCCGTTCGAGGACTTCACCAGGT
ATCGCCCGGTCAATTCTCCGTATGACGCGCCGCTTGAGCTTGCAAAGCCG
TTGCGATGGGTGCCGGATCAACTTGATCTAGGCAATGGACGATTGGCGCA
TCAGATTCATGTGGTGCCTCAACTGGCGGTTGCTGTTTCGCCACTCATCG
TGTCGGCGGCACAGGCGTCGAAACGAAAAGTGGGACGTCCGTTTCGGAAG
CGCAATTCGCGACGAATCGACTATAGAGATCGACGTGTTGCGGAACGACT
TGTGAATGAAGTGTTGGATGCTGCGGCTTCACTGACGCCGCAACAACGCT
TCTACGCCAGATGGTGGGATAACAAGTTATTATCCACTGGCGGTATCTCT
GCGTTCTACGAGACCGCGGCAAGATTGAATGCGTTTCAAGTGGCGCAGCA
GTTCTTGGGCGAAATGCTGAGCCAGCATGACGCGTTGGTGTTGACATGGA
GAGAGAAACGGCGACATGATCTGGTGCGACCTGTGGCGCTGATCAAAAAC
TTGCGTCGTAACCAACGGTTCACGTCGTTCATCAGCGAGGAAGTGGGGTT
TGGTGAGGTACGCGCCGAGGATTGGCGCTCGTTGATCAGCGCTCAACCGC
ACTCGGAGTTCCCATCGGGCAGCGCGGCGCTTTGCACGGCGGCGATGGAA
CATATCGAGACGTATGTGCGAAACAAGATGGGGTTTGTTCCGAGCATTAA
GATTCGATACACGGCGGGAAGTTTGCCGTTCTTCCTGCCGGAGGATACTA
CTGTGGCGTTTGGAAGCCCGTTGCAGGCGGCGGCCAACTGCGCGCGCAGT
CGACTGTGGGCGGGGGTGCATTTTCCGCCGGCGTTGCCGGCTGGAGAGCG
GATTGGACGCGGGATTGGACGGATTGTGTTTGAACATATGCGGGAGCTGG
GGGAGGGACGTGTGCCCAACAACTGCACGCGATGTCTGGCGGAGGGCATT
CTGGGACGGTGA

protein sequence of Gcaud9327.t1

>Gcaud9327.t1 ID=Gcaud9327.t1|Name=Gcaud9327.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=504bp
MPPLLLLPLISALFLPASVQTRAESLAEQLFLDFLPLNDAAAALTPPRLL
FAETPIVVRYTLIGGAAIYDARAACEPLALSFFGTNDTVPRSFCQPDNNA
ILASYTTYRALLREFPVEMRGYADFLRRNNLEPVSSSRNPSTLNGWANLA
GDRLADFFQNDGWNSLGDRSRQTGRVPFEDFTRYRPVNSPYDAPLELAKP
LRWVPDQLDLGNGRLAHQIHVVPQLAVAVSPLIVSAAQASKRKVGRPFRK
RNSRRIDYRDRRVAERLVNEVLDAAASLTPQQRFYARWWDNKLLSTGGIS
AFYETAARLNAFQVAQQFLGEMLSQHDALVLTWREKRRHDLVRPVALIKN
LRRNQRFTSFISEEVGFGEVRAEDWRSLISAQPHSEFPSGSAALCTAAME
HIETYVRNKMGFVPSIKIRYTAGSLPFFLPEDTTVAFGSPLQAAANCARS
RLWAGVHFPPALPAGERIGRGIGRIVFEHMRELGEGRVPNNCTRCLAEGI
LGR*

mRNA from alignment at NODE_989_length_15443_cov_4.322564:698..2209-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9327.t1 ID=Gcaud9327.t1|Name=Gcaud9327.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1512bp|location=Sequence derived from alignment at NODE_989_length_15443_cov_4.322564:698..2209- (Gracilaria caudata M_176_S67 male)
ATGCCGCCGTTGTTGTTATTACCGCTTATCTCCGCGTTGTTTCTGCCCGC
TTCTGTGCAGACGCGCGCCGAATCGTTGGCGGAACAGTTGTTCCTGGACT
TTTTACCGCTCAATGACGCGGCGGCTGCGCTTACGCCGCCGCGGTTGTTG
TTTGCGGAGACGCCCATTGTGGTGCGATACACTTTGATAGGTGGTGCCGC
AATCTACGACGCGAGAGCCGCCTGTGAACCGCTTGCGCTCTCGTTCTTCG
GTACCAATGACACCGTCCCACGGTCGTTCTGTCAACCTGATAACAATGCC
ATCCTCGCCTCCTACACCACCTATCGCGCGCTTCTTCGCGAGTTTCCCGT
CGAGATGCGCGGTTACGCCGACTTTCTGCGTCGCAACAACCTGGAACCGG
TGAGTTCGTCGCGGAATCCGTCCACACTCAACGGATGGGCCAATCTTGCC
GGTGATCGATTGGCCGATTTCTTTCAGAACGACGGTTGGAATTCGCTTGG
AGACCGTTCTCGACAGACCGGGCGCGTGCCGTTCGAGGACTTCACCAGGT
ATCGCCCGGTCAATTCTCCGTATGACGCGCCGCTTGAGCTTGCAAAGCCG
TTGCGATGGGTGCCGGATCAACTTGATCTAGGCAATGGACGATTGGCGCA
TCAGATTCATGTGGTGCCTCAACTGGCGGTTGCTGTTTCGCCACTCATCG
TGTCGGCGGCACAGGCGTCGAAACGAAAAGTGGGACGTCCGTTTCGGAAG
CGCAATTCGCGACGAATCGACTATAGAGATCGACGTGTTGCGGAACGACT
TGTGAATGAAGTGTTGGATGCTGCGGCTTCACTGACGCCGCAACAACGCT
TCTACGCCAGATGGTGGGATAACAAGTTATTATCCACTGGCGGTATCTCT
GCGTTCTACGAGACCGCGGCAAGATTGAATGCGTTTCAAGTGGCGCAGCA
GTTCTTGGGCGAAATGCTGAGCCAGCATGACGCGTTGGTGTTGACATGGA
GAGAGAAACGGCGACATGATCTGGTGCGACCTGTGGCGCTGATCAAAAAC
TTGCGTCGTAACCAACGGTTCACGTCGTTCATCAGCGAGGAAGTGGGGTT
TGGTGAGGTACGCGCCGAGGATTGGCGCTCGTTGATCAGCGCTCAACCGC
ACTCGGAGTTCCCATCGGGCAGCGCGGCGCTTTGCACGGCGGCGATGGAA
CATATCGAGACGTATGTGCGAAACAAGATGGGGTTTGTTCCGAGCATTAA
GATTCGATACACGGCGGGAAGTTTGCCGTTCTTCCTGCCGGAGGATACTA
CTGTGGCGTTTGGAAGCCCGTTGCAGGCGGCGGCCAACTGCGCGCGCAGT
CGACTGTGGGCGGGGGTGCATTTTCCGCCGGCGTTGCCGGCTGGAGAGCG
GATTGGACGCGGGATTGGACGGATTGTGTTTGAACATATGCGGGAGCTGG
GGGAGGGACGTGTGCCCAACAACTGCACGCGATGTCTGGCGGAGGGCATT
CTGGGACGGTGA

Coding sequence (CDS) from alignment at NODE_989_length_15443_cov_4.322564:698..2209-

>Gcaud9327.t1 ID=Gcaud9327.t1|Name=Gcaud9327.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1512bp|location=Sequence derived from alignment at NODE_989_length_15443_cov_4.322564:698..2209- (Gracilaria caudata M_176_S67 male)
ATGCCGCCGTTGTTGTTATTACCGCTTATCTCCGCGTTGTTTCTGCCCGC
TTCTGTGCAGACGCGCGCCGAATCGTTGGCGGAACAGTTGTTCCTGGACT
TTTTACCGCTCAATGACGCGGCGGCTGCGCTTACGCCGCCGCGGTTGTTG
TTTGCGGAGACGCCCATTGTGGTGCGATACACTTTGATAGGTGGTGCCGC
AATCTACGACGCGAGAGCCGCCTGTGAACCGCTTGCGCTCTCGTTCTTCG
GTACCAATGACACCGTCCCACGGTCGTTCTGTCAACCTGATAACAATGCC
ATCCTCGCCTCCTACACCACCTATCGCGCGCTTCTTCGCGAGTTTCCCGT
CGAGATGCGCGGTTACGCCGACTTTCTGCGTCGCAACAACCTGGAACCGG
TGAGTTCGTCGCGGAATCCGTCCACACTCAACGGATGGGCCAATCTTGCC
GGTGATCGATTGGCCGATTTCTTTCAGAACGACGGTTGGAATTCGCTTGG
AGACCGTTCTCGACAGACCGGGCGCGTGCCGTTCGAGGACTTCACCAGGT
ATCGCCCGGTCAATTCTCCGTATGACGCGCCGCTTGAGCTTGCAAAGCCG
TTGCGATGGGTGCCGGATCAACTTGATCTAGGCAATGGACGATTGGCGCA
TCAGATTCATGTGGTGCCTCAACTGGCGGTTGCTGTTTCGCCACTCATCG
TGTCGGCGGCACAGGCGTCGAAACGAAAAGTGGGACGTCCGTTTCGGAAG
CGCAATTCGCGACGAATCGACTATAGAGATCGACGTGTTGCGGAACGACT
TGTGAATGAAGTGTTGGATGCTGCGGCTTCACTGACGCCGCAACAACGCT
TCTACGCCAGATGGTGGGATAACAAGTTATTATCCACTGGCGGTATCTCT
GCGTTCTACGAGACCGCGGCAAGATTGAATGCGTTTCAAGTGGCGCAGCA
GTTCTTGGGCGAAATGCTGAGCCAGCATGACGCGTTGGTGTTGACATGGA
GAGAGAAACGGCGACATGATCTGGTGCGACCTGTGGCGCTGATCAAAAAC
TTGCGTCGTAACCAACGGTTCACGTCGTTCATCAGCGAGGAAGTGGGGTT
TGGTGAGGTACGCGCCGAGGATTGGCGCTCGTTGATCAGCGCTCAACCGC
ACTCGGAGTTCCCATCGGGCAGCGCGGCGCTTTGCACGGCGGCGATGGAA
CATATCGAGACGTATGTGCGAAACAAGATGGGGTTTGTTCCGAGCATTAA
GATTCGATACACGGCGGGAAGTTTGCCGTTCTTCCTGCCGGAGGATACTA
CTGTGGCGTTTGGAAGCCCGTTGCAGGCGGCGGCCAACTGCGCGCGCAGT
CGACTGTGGGCGGGGGTGCATTTTCCGCCGGCGTTGCCGGCTGGAGAGCG
GATTGGACGCGGGATTGGACGGATTGTGTTTGAACATATGCGGGAGCTGG
GGGAGGGACGTGTGCCCAACAACTGCACGCGATGTCTGGCGGAGGGCATT
CTGGGACGGTGA