Gcaud9312.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9312.t2
Unique Name	Gcaud9312.t2
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	380

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_3285_length_3708_cov_3.161736	contig	NODE_3285_length_3708_cov_3.161736:2307..3446 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708282.1
Max annot lvl	2759\|Eukaryota
Evalue	2.87e-63
EggNOG OGs	2CZMN@1\|root,2SAXR@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9312	Gcaud9312	Gracilaria caudata M_176_S67 male	gene	NODE_3285_length_3708_cov_3.161736 2307..3446 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9312.t2.stop1	Gcaud9312.t2.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_3285_length_3708_cov_3.161736 2307..2309 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9312.t2.CDS1	Gcaud9312.t2.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_3285_length_3708_cov_3.161736 2307..3446 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9312.t2.exon1	Gcaud9312.t2.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_3285_length_3708_cov_3.161736 2307..3446 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9312.t2.start1	Gcaud9312.t2.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_3285_length_3708_cov_3.161736 3444..3446 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9312.t2	Gcaud9312.t2	Gracilaria caudata M_176_S67 male	polypeptide	NODE_3285_length_3708_cov_3.161736 2307..3446 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_3285_length_3708_cov_3.161736:2307..3446-
coding sequence from alignment at NODE_3285_length_3708_cov_3.161736:2307..3446-

mRNA sequence

>Gcaud9312.t2 ID=Gcaud9312.t2|Name=Gcaud9312.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=380bp
MVRAPRILQLPSFRRAYAKPAFHGKQRAPPFVPLLFGVLHFFRRRRATLT
FVFLMVWVFVDMDSYPLWWLSWMLHGAPIADAALSHNCSKTERASLHPLV
IVVPLIASQLVRVEDSLKRWLLPSSFPCHSDAPVAHLSFFFDRAPTDAAT
ASAVHRLRGVLRKRALATVLHTCFARVSIRFANLTREQSTNSHAMDVVHN
LVITAGSNNQFEAAMRLYEAEYSHMFLMEPDVYAIRSGWVDRALREASYG
AFWQRGAIMRYSPRFNLGFAPFRTRYQRHINGNGLYRLGDRCFERYRALV
RKRFGNGAYDVAMCQFRLATENVAVYQATAHRFEVSAMIVSIGVTSVNED
ELRARFEEALLVHGKAQYVAFPALNVMQY*

spliced messenger RNA

>Gcaud9312.t2 ID=Gcaud9312.t2|Name=Gcaud9312.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1140bp|location=Sequence derived from alignment at NODE_3285_length_3708_cov_3.161736:2307..3446- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCGAGCGCCGCGCATCTTGCAGCTGCCGTCGTTCCGCCGCGCGTA
CGCAAAGCCCGCGTTTCACGGCAAGCAGCGCGCGCCGCCGTTCGTGCCGT
TGTTGTTCGGCGTGCTACACTTCTTCCGTCGTCGACGCGCCACGCTCACG
TTTGTGTTCCTGATGGTGTGGGTGTTCGTGGACATGGATTCGTACCCACT
GTGGTGGCTGTCGTGGATGCTGCACGGCGCGCCCATCGCCGATGCGGCGT
TGTCGCACAATTGCTCCAAGACGGAGCGCGCGTCGCTGCACCCGTTGGTG
ATCGTGGTGCCGCTCATCGCGTCGCAGCTGGTGCGCGTGGAGGACTCGCT
CAAACGCTGGCTACTGCCCAGCTCGTTCCCGTGCCACTCGGACGCACCCG
TGGCGCATCTGTCCTTCTTTTTCGACCGCGCTCCCACCGATGCGGCCACC
GCTAGCGCCGTGCACAGATTACGCGGCGTGCTACGCAAGCGCGCGCTCGC
GACGGTGCTACACACGTGCTTTGCGCGCGTGTCCATCCGCTTTGCAAACC
TCACGCGCGAGCAATCCACCAACTCGCACGCCATGGACGTGGTGCACAAC
CTGGTGATCACGGCGGGCAGTAACAACCAGTTCGAGGCCGCCATGCGTCT
GTACGAGGCCGAGTACAGCCACATGTTCCTGATGGAGCCGGACGTGTACG
CCATTCGCTCGGGCTGGGTGGATCGCGCGCTGCGCGAGGCGAGCTACGGC
GCGTTCTGGCAGCGCGGCGCCATCATGCGCTACTCGCCGCGCTTCAACCT
GGGCTTTGCGCCGTTCCGCACGCGCTACCAGCGCCACATCAACGGCAACG
GGCTGTACCGACTGGGCGACCGCTGCTTCGAGCGCTACCGCGCGCTGGTG
CGCAAGCGCTTCGGCAACGGCGCGTACGACGTGGCCATGTGCCAGTTCCG
ACTGGCCACGGAGAACGTGGCGGTGTACCAGGCGACGGCGCACCGCTTCG
AGGTGAGCGCGATGATTGTGTCCATCGGCGTGACGTCAGTAAACGAGGAC
GAGCTGCGCGCGCGCTTCGAGGAGGCGCTGCTGGTGCATGGCAAGGCTCA
ATACGTCGCATTCCCGGCCCTCAACGTGATGCAGTACTGA

protein sequence of Gcaud9312.t2

>Gcaud9312.t2 ID=Gcaud9312.t2|Name=Gcaud9312.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=380bp
MVRAPRILQLPSFRRAYAKPAFHGKQRAPPFVPLLFGVLHFFRRRRATLT
FVFLMVWVFVDMDSYPLWWLSWMLHGAPIADAALSHNCSKTERASLHPLV
IVVPLIASQLVRVEDSLKRWLLPSSFPCHSDAPVAHLSFFFDRAPTDAAT
ASAVHRLRGVLRKRALATVLHTCFARVSIRFANLTREQSTNSHAMDVVHN
LVITAGSNNQFEAAMRLYEAEYSHMFLMEPDVYAIRSGWVDRALREASYG
AFWQRGAIMRYSPRFNLGFAPFRTRYQRHINGNGLYRLGDRCFERYRALV
RKRFGNGAYDVAMCQFRLATENVAVYQATAHRFEVSAMIVSIGVTSVNED
ELRARFEEALLVHGKAQYVAFPALNVMQY*

mRNA from alignment at NODE_3285_length_3708_cov_3.161736:2307..3446-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9312.t2 ID=Gcaud9312.t2|Name=Gcaud9312.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1140bp|location=Sequence derived from alignment at NODE_3285_length_3708_cov_3.161736:2307..3446- (Gracilaria caudata M_176_S67 male)
ATGGTGCGAGCGCCGCGCATCTTGCAGCTGCCGTCGTTCCGCCGCGCGTA
CGCAAAGCCCGCGTTTCACGGCAAGCAGCGCGCGCCGCCGTTCGTGCCGT
TGTTGTTCGGCGTGCTACACTTCTTCCGTCGTCGACGCGCCACGCTCACG
TTTGTGTTCCTGATGGTGTGGGTGTTCGTGGACATGGATTCGTACCCACT
GTGGTGGCTGTCGTGGATGCTGCACGGCGCGCCCATCGCCGATGCGGCGT
TGTCGCACAATTGCTCCAAGACGGAGCGCGCGTCGCTGCACCCGTTGGTG
ATCGTGGTGCCGCTCATCGCGTCGCAGCTGGTGCGCGTGGAGGACTCGCT
CAAACGCTGGCTACTGCCCAGCTCGTTCCCGTGCCACTCGGACGCACCCG
TGGCGCATCTGTCCTTCTTTTTCGACCGCGCTCCCACCGATGCGGCCACC
GCTAGCGCCGTGCACAGATTACGCGGCGTGCTACGCAAGCGCGCGCTCGC
GACGGTGCTACACACGTGCTTTGCGCGCGTGTCCATCCGCTTTGCAAACC
TCACGCGCGAGCAATCCACCAACTCGCACGCCATGGACGTGGTGCACAAC
CTGGTGATCACGGCGGGCAGTAACAACCAGTTCGAGGCCGCCATGCGTCT
GTACGAGGCCGAGTACAGCCACATGTTCCTGATGGAGCCGGACGTGTACG
CCATTCGCTCGGGCTGGGTGGATCGCGCGCTGCGCGAGGCGAGCTACGGC
GCGTTCTGGCAGCGCGGCGCCATCATGCGCTACTCGCCGCGCTTCAACCT
GGGCTTTGCGCCGTTCCGCACGCGCTACCAGCGCCACATCAACGGCAACG
GGCTGTACCGACTGGGCGACCGCTGCTTCGAGCGCTACCGCGCGCTGGTG
CGCAAGCGCTTCGGCAACGGCGCGTACGACGTGGCCATGTGCCAGTTCCG
ACTGGCCACGGAGAACGTGGCGGTGTACCAGGCGACGGCGCACCGCTTCG
AGGTGAGCGCGATGATTGTGTCCATCGGCGTGACGTCAGTAAACGAGGAC
GAGCTGCGCGCGCGCTTCGAGGAGGCGCTGCTGGTGCATGGCAAGGCTCA
ATACGTCGCATTCCCGGCCCTCAACGTGATGCAGTACTGA

Coding sequence (CDS) from alignment at NODE_3285_length_3708_cov_3.161736:2307..3446-

>Gcaud9312.t2 ID=Gcaud9312.t2|Name=Gcaud9312.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1140bp|location=Sequence derived from alignment at NODE_3285_length_3708_cov_3.161736:2307..3446- (Gracilaria caudata M_176_S67 male)
ATGGTGCGAGCGCCGCGCATCTTGCAGCTGCCGTCGTTCCGCCGCGCGTA
CGCAAAGCCCGCGTTTCACGGCAAGCAGCGCGCGCCGCCGTTCGTGCCGT
TGTTGTTCGGCGTGCTACACTTCTTCCGTCGTCGACGCGCCACGCTCACG
TTTGTGTTCCTGATGGTGTGGGTGTTCGTGGACATGGATTCGTACCCACT
GTGGTGGCTGTCGTGGATGCTGCACGGCGCGCCCATCGCCGATGCGGCGT
TGTCGCACAATTGCTCCAAGACGGAGCGCGCGTCGCTGCACCCGTTGGTG
ATCGTGGTGCCGCTCATCGCGTCGCAGCTGGTGCGCGTGGAGGACTCGCT
CAAACGCTGGCTACTGCCCAGCTCGTTCCCGTGCCACTCGGACGCACCCG
TGGCGCATCTGTCCTTCTTTTTCGACCGCGCTCCCACCGATGCGGCCACC
GCTAGCGCCGTGCACAGATTACGCGGCGTGCTACGCAAGCGCGCGCTCGC
GACGGTGCTACACACGTGCTTTGCGCGCGTGTCCATCCGCTTTGCAAACC
TCACGCGCGAGCAATCCACCAACTCGCACGCCATGGACGTGGTGCACAAC
CTGGTGATCACGGCGGGCAGTAACAACCAGTTCGAGGCCGCCATGCGTCT
GTACGAGGCCGAGTACAGCCACATGTTCCTGATGGAGCCGGACGTGTACG
CCATTCGCTCGGGCTGGGTGGATCGCGCGCTGCGCGAGGCGAGCTACGGC
GCGTTCTGGCAGCGCGGCGCCATCATGCGCTACTCGCCGCGCTTCAACCT
GGGCTTTGCGCCGTTCCGCACGCGCTACCAGCGCCACATCAACGGCAACG
GGCTGTACCGACTGGGCGACCGCTGCTTCGAGCGCTACCGCGCGCTGGTG
CGCAAGCGCTTCGGCAACGGCGCGTACGACGTGGCCATGTGCCAGTTCCG
ACTGGCCACGGAGAACGTGGCGGTGTACCAGGCGACGGCGCACCGCTTCG
AGGTGAGCGCGATGATTGTGTCCATCGGCGTGACGTCAGTAAACGAGGAC
GAGCTGCGCGCGCGCTTCGAGGAGGCGCTGCTGGTGCATGGCAAGGCTCA
ATACGTCGCATTCCCGGCCCTCAACGTGATGCAGTACTGA