Gcaud9311.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9311.t1
Unique Name	Gcaud9311.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	374

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_3285_length_3708_cov_3.161736	contig	NODE_3285_length_3708_cov_3.161736:533..1654 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9311	Gcaud9311	Gracilaria caudata M_176_S67 male	gene	NODE_3285_length_3708_cov_3.161736 533..1654 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9311.t1.start1	Gcaud9311.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_3285_length_3708_cov_3.161736 533..535 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9311.t1.CDS1	Gcaud9311.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_3285_length_3708_cov_3.161736 533..1654 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9311.t1.exon1	Gcaud9311.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_3285_length_3708_cov_3.161736 533..1654 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9311.t1.stop1	Gcaud9311.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_3285_length_3708_cov_3.161736 1652..1654 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9311.t1	Gcaud9311.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_3285_length_3708_cov_3.161736 533..1654 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_3285_length_3708_cov_3.161736:533..1654+
coding sequence from alignment at NODE_3285_length_3708_cov_3.161736:533..1654+

mRNA sequence

>Gcaud9311.t1 ID=Gcaud9311.t1|Name=Gcaud9311.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=374bp
MLASLPHLRRPHAYSRAELQRLPLAMRLCFVSPSPLCSLHAPKLLADAAF
CGFNIYPTTDAHVRLHRVLHTAARQGALPARMADDAFDQRVHALAFTPEL
FEFLATVSWHELNTAIIDFLVLLHHQLQCDADHAGVDSMRRELLPSVWRR
VQDQIGEFEHGEPTSGRRSVVLEHLVQISFMTPWRVDVLAIYTPSASSSS
SNMAPPLNATSQLPSSQLLTKLLQDWILFDSLLKPILATPHEVVEALERA
IATAQSRQIFSCALALLESHLVTQLPTDVLDRLIAWVVRRYCERLPPRQR
RLASLRKLLAMSSQRLREVSTEPSVSFSELLLQDDDDDSSVQDDVAQCCE
AQPALYPLNVLPWKRYRSEHRAW*

spliced messenger RNA

>Gcaud9311.t1 ID=Gcaud9311.t1|Name=Gcaud9311.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1122bp|location=Sequence derived from alignment at NODE_3285_length_3708_cov_3.161736:533..1654+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTAGCGTCGCTTCCGCATCTTCGTCGCCCGCACGCCTACTCGCGCGC
AGAGCTGCAGCGATTGCCGCTGGCGATGCGACTGTGCTTTGTGTCGCCGT
CGCCGCTGTGCTCGCTGCACGCGCCCAAGCTGCTGGCCGATGCGGCGTTT
TGTGGCTTCAACATCTACCCCACCACCGACGCTCATGTGCGGCTGCACCG
CGTGCTGCACACGGCCGCCAGACAGGGCGCGTTGCCGGCGCGTATGGCTG
ACGACGCGTTCGACCAGCGTGTGCATGCGCTCGCGTTCACGCCGGAGTTG
TTCGAGTTTCTGGCCACCGTCAGCTGGCACGAGTTGAACACCGCTATCAT
CGACTTTCTGGTTCTGCTTCACCACCAACTGCAGTGCGATGCCGACCACG
CCGGCGTGGACAGTATGCGTCGCGAGCTGTTGCCGTCCGTGTGGCGCCGC
GTGCAGGACCAGATTGGGGAGTTTGAGCACGGCGAGCCCACCTCCGGACG
TCGCTCAGTCGTGCTGGAGCATCTGGTGCAGATAAGCTTCATGACTCCCT
GGCGAGTGGACGTGCTTGCCATCTACACCCCCTCCGcgtcgtcgtcgtcg
tcgAACATGGCGCCGCCTCTCAACGCCACTTCGCAACTGCCTTCCTCACA
ACTGCTCACAAAACTGCTACAGGACTGGATTCTGTTCGATTCGCTGCTCA
AACCCATTCTGGCCACGCCGCACGAGGTGGTGGAGGCTCTGGAACGCGCC
ATTGCAACTGCTCAATCGCGTCAAATCTTCTCGTGCGCGCTCGCGTTACT
TGAGTCCCACCTTGTGACGCAGCTACCCACCGACGTGCTTGACCGCCTCA
TCGCATGGGTTGTACGTCGCTACTGCGAGCGTTTACCGCCGCGACAGCGA
CGGCTGGCCAGTCTGCGGAAGCTGCTGGCCATGAGTTCGCAACGTCTGCG
CGAGGTGTCCACCGAGCCGTCAGTATCGTTTTCGGAGCTTCTGCTGCAGG
ACGATGACGATGACAGCAGCGTTCAGGATGACGTTGCGCAGTGTTGCGAA
GCACAGCCCGCGCTGTACCCGCTCAACGTGCTGCCGTGGAAGAGGTACCG
CTCGGAGCACCGTGCGTGGTGA

protein sequence of Gcaud9311.t1

>Gcaud9311.t1 ID=Gcaud9311.t1|Name=Gcaud9311.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=374bp
MLASLPHLRRPHAYSRAELQRLPLAMRLCFVSPSPLCSLHAPKLLADAAF
CGFNIYPTTDAHVRLHRVLHTAARQGALPARMADDAFDQRVHALAFTPEL
FEFLATVSWHELNTAIIDFLVLLHHQLQCDADHAGVDSMRRELLPSVWRR
VQDQIGEFEHGEPTSGRRSVVLEHLVQISFMTPWRVDVLAIYTPSASSSS
SNMAPPLNATSQLPSSQLLTKLLQDWILFDSLLKPILATPHEVVEALERA
IATAQSRQIFSCALALLESHLVTQLPTDVLDRLIAWVVRRYCERLPPRQR
RLASLRKLLAMSSQRLREVSTEPSVSFSELLLQDDDDDSSVQDDVAQCCE
AQPALYPLNVLPWKRYRSEHRAW*

mRNA from alignment at NODE_3285_length_3708_cov_3.161736:533..1654+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9311.t1 ID=Gcaud9311.t1|Name=Gcaud9311.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1122bp|location=Sequence derived from alignment at NODE_3285_length_3708_cov_3.161736:533..1654+ (Gracilaria caudata M_176_S67 male)
ATGTTAGCGTCGCTTCCGCATCTTCGTCGCCCGCACGCCTACTCGCGCGC
AGAGCTGCAGCGATTGCCGCTGGCGATGCGACTGTGCTTTGTGTCGCCGT
CGCCGCTGTGCTCGCTGCACGCGCCCAAGCTGCTGGCCGATGCGGCGTTT
TGTGGCTTCAACATCTACCCCACCACCGACGCTCATGTGCGGCTGCACCG
CGTGCTGCACACGGCCGCCAGACAGGGCGCGTTGCCGGCGCGTATGGCTG
ACGACGCGTTCGACCAGCGTGTGCATGCGCTCGCGTTCACGCCGGAGTTG
TTCGAGTTTCTGGCCACCGTCAGCTGGCACGAGTTGAACACCGCTATCAT
CGACTTTCTGGTTCTGCTTCACCACCAACTGCAGTGCGATGCCGACCACG
CCGGCGTGGACAGTATGCGTCGCGAGCTGTTGCCGTCCGTGTGGCGCCGC
GTGCAGGACCAGATTGGGGAGTTTGAGCACGGCGAGCCCACCTCCGGACG
TCGCTCAGTCGTGCTGGAGCATCTGGTGCAGATAAGCTTCATGACTCCCT
GGCGAGTGGACGTGCTTGCCATCTACACCCCCTCCGcgtcgtcgtcgtcg
tcgAACATGGCGCCGCCTCTCAACGCCACTTCGCAACTGCCTTCCTCACA
ACTGCTCACAAAACTGCTACAGGACTGGATTCTGTTCGATTCGCTGCTCA
AACCCATTCTGGCCACGCCGCACGAGGTGGTGGAGGCTCTGGAACGCGCC
ATTGCAACTGCTCAATCGCGTCAAATCTTCTCGTGCGCGCTCGCGTTACT
TGAGTCCCACCTTGTGACGCAGCTACCCACCGACGTGCTTGACCGCCTCA
TCGCATGGGTTGTACGTCGCTACTGCGAGCGTTTACCGCCGCGACAGCGA
CGGCTGGCCAGTCTGCGGAAGCTGCTGGCCATGAGTTCGCAACGTCTGCG
CGAGGTGTCCACCGAGCCGTCAGTATCGTTTTCGGAGCTTCTGCTGCAGG
ACGATGACGATGACAGCAGCGTTCAGGATGACGTTGCGCAGTGTTGCGAA
GCACAGCCCGCGCTGTACCCGCTCAACGTGCTGCCGTGGAAGAGGTACCG
CTCGGAGCACCGTGCGTGGTGA

Coding sequence (CDS) from alignment at NODE_3285_length_3708_cov_3.161736:533..1654+

>Gcaud9311.t1 ID=Gcaud9311.t1|Name=Gcaud9311.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1122bp|location=Sequence derived from alignment at NODE_3285_length_3708_cov_3.161736:533..1654+ (Gracilaria caudata M_176_S67 male)
ATGTTAGCGTCGCTTCCGCATCTTCGTCGCCCGCACGCCTACTCGCGCGC
AGAGCTGCAGCGATTGCCGCTGGCGATGCGACTGTGCTTTGTGTCGCCGT
CGCCGCTGTGCTCGCTGCACGCGCCCAAGCTGCTGGCCGATGCGGCGTTT
TGTGGCTTCAACATCTACCCCACCACCGACGCTCATGTGCGGCTGCACCG
CGTGCTGCACACGGCCGCCAGACAGGGCGCGTTGCCGGCGCGTATGGCTG
ACGACGCGTTCGACCAGCGTGTGCATGCGCTCGCGTTCACGCCGGAGTTG
TTCGAGTTTCTGGCCACCGTCAGCTGGCACGAGTTGAACACCGCTATCAT
CGACTTTCTGGTTCTGCTTCACCACCAACTGCAGTGCGATGCCGACCACG
CCGGCGTGGACAGTATGCGTCGCGAGCTGTTGCCGTCCGTGTGGCGCCGC
GTGCAGGACCAGATTGGGGAGTTTGAGCACGGCGAGCCCACCTCCGGACG
TCGCTCAGTCGTGCTGGAGCATCTGGTGCAGATAAGCTTCATGACTCCCT
GGCGAGTGGACGTGCTTGCCATCTACACCCCCTCCGcgtcgtcgtcgtcg
tcgAACATGGCGCCGCCTCTCAACGCCACTTCGCAACTGCCTTCCTCACA
ACTGCTCACAAAACTGCTACAGGACTGGATTCTGTTCGATTCGCTGCTCA
AACCCATTCTGGCCACGCCGCACGAGGTGGTGGAGGCTCTGGAACGCGCC
ATTGCAACTGCTCAATCGCGTCAAATCTTCTCGTGCGCGCTCGCGTTACT
TGAGTCCCACCTTGTGACGCAGCTACCCACCGACGTGCTTGACCGCCTCA
TCGCATGGGTTGTACGTCGCTACTGCGAGCGTTTACCGCCGCGACAGCGA
CGGCTGGCCAGTCTGCGGAAGCTGCTGGCCATGAGTTCGCAACGTCTGCG
CGAGGTGTCCACCGAGCCGTCAGTATCGTTTTCGGAGCTTCTGCTGCAGG
ACGATGACGATGACAGCAGCGTTCAGGATGACGTTGCGCAGTGTTGCGAA
GCACAGCCCGCGCTGTACCCGCTCAACGTGCTGCCGTGGAAGAGGTACCG
CTCGGAGCACCGTGCGTGGTGA