Gcaud9304.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9304.t2
Unique NameGcaud9304.t2
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length448
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1188_length_12866_cov_4.640157contigNODE_1188_length_12866_cov_4.640157:8561..10051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705362.1
Preferred namePRO1
PFAMsAA_kinase,PUA
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00043
KEGG koko:K00931
KEGG ReactionR00239
KEGG Pathwayko00330,ko00332,ko01100,ko01130,ko01230,map00330,map00332,map01100,map01130,map01230
KEGG ModuleM00015
GOsGO:0003674,GO:0003824,GO:0004349,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006520,GO:0006536,GO:0006560,GO:0006561,GO:0006793,GO:0006796,GO:0006807,GO:0006914,GO:0008150,GO:0008152,GO:0008652,GO:0009056,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016236,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016774,GO:0018130,GO:0019202,GO:0019752,GO:0034517,GO:0035973,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046483,GO:0061912,GO:0061919,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Evalue1.65e-89
EggNOG OGsCOG0263@1|root,KOG1154@2759|Eukaryota
EC2.7.2.11
Descriptionglutamate 5-kinase activity
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9304Gcaud9304Gracilaria caudata M_176_S67 malegeneNODE_1188_length_12866_cov_4.640157 8561..10051 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9304.t2Gcaud9304.t2Gracilaria caudata M_176_S67 malepolypeptideNODE_1188_length_12866_cov_4.640157 8561..10051 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9304.t2.stop1Gcaud9304.t2.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1188_length_12866_cov_4.640157 8561..8563 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9304.t2.CDS1Gcaud9304.t2.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1188_length_12866_cov_4.640157 8561..9148 -
Gcaud9304.t2.CDS2Gcaud9304.t2.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1188_length_12866_cov_4.640157 9233..9851 -
Gcaud9304.t2.CDS3Gcaud9304.t2.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_1188_length_12866_cov_4.640157 9915..10051 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9304.t2.exon1Gcaud9304.t2.exon1Gracilaria caudata M_176_S67 maleexonNODE_1188_length_12866_cov_4.640157 8561..9148 -
Gcaud9304.t2.exon2Gcaud9304.t2.exon2Gracilaria caudata M_176_S67 maleexonNODE_1188_length_12866_cov_4.640157 9233..9851 -
Gcaud9304.t2.exon3Gcaud9304.t2.exon3Gracilaria caudata M_176_S67 maleexonNODE_1188_length_12866_cov_4.640157 9915..10051 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9304.t2.intron1Gcaud9304.t2.intron1Gracilaria caudata M_176_S67 maleintronNODE_1188_length_12866_cov_4.640157 9149..9232 -
Gcaud9304.t2.intron2Gcaud9304.t2.intron2Gracilaria caudata M_176_S67 maleintronNODE_1188_length_12866_cov_4.640157 9852..9914 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9304.t2.start1Gcaud9304.t2.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1188_length_12866_cov_4.640157 10049..10051 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9304.t2 ID=Gcaud9304.t2|Name=Gcaud9304.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=448bp
MGNGRPFTRRWPTSRTSNCGISTRICPHSYWIVYQSRSRHLTVLSQNRAM
GQIDMSDTHSDSVYSVSPRPIIVVKIGTSTLMRDHNNANTATISSAAGRG
LSSGSGELAVSSIGLLVDTLLTLRRDGYDVILVTSGAVGVGCRELGVSER
PKVQDATSQEERARILADIQAYAAVGQSVLMRTYDALMGMANQKVAQILL
TSGDLSSEYQYINAKNTLSSLLRMGVIPIVNENDTTATEELKYGDNDWLS
ALTAKPINIVPNIESLQVNLSSNTTGTQWGTGGMKTKITAARLATAAGVR
VCLIHGRFPSRAVDFVRNSEDKCGTVFEPLGNPLAVERKKWISNCLPPRG
EITINKAAESMLRAGYSLRTNGVIRCARDFEENSAVTICTESGMELARGM
CNYSSQFLNKYGGRSAHEISKMLCFPVNDVVVHGDNLALLVDYCEQH*
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spliced messenger RNA

>Gcaud9304.t2 ID=Gcaud9304.t2|Name=Gcaud9304.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1344bp|location=Sequence derived from alignment at NODE_1188_length_12866_cov_4.640157:8561..10051- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAACGGGAGACCGTTCACTCGTCGATGGCCCACGTCTCGAACATC
AAATTGCGGAATATCGACAAGAATCTGTCCACATTCTTATTGGATCGTCT
ATCAATCGCGATCTCGGCATCTAACTGTTCTTTCGCAAAACCGTGCCATG
GGTCAAATCGACATGTCCGACACGCACAGCGATTCGGTTTATTCAGTTTC
ACCGCGACCAATAATCGTTGTGAAAATTGGAACCTCAACGCTTATGCGAG
ATCACAACAACGCCAACACCGCAACTATCTCTTCTGCTGCTGGTAGGGGA
TTGAGCAGTGGATCAGGTGAACTTGCAGTTTCATCGATTGGCTTGCTAGT
GGATACGCTTTTGACTCTGCGTCGAGACGGATATGACGTAATTCTGGTTA
CTTCGGGTGCCGTGGGTGTTGGATGCAGGGAACTTGGTGTTTCTGAGCGC
CCCAAAGTACAGGATGCCACATCTCAAGAAGAGCGGGCCAGAATACTGGC
TGACATACAAGCATATGCCGCCGTTGGTCAAAGCGTCTTGATGCGCACGT
ACGATGCGCTTATGGGTATGGCGAACCAAAAAGTGGCGCAGATTCTCTTA
ACAAGCGGAGATTTGAGCAGTGAATATCAGTATATCAATGCCAAGAATAC
GCTTTCTTCTTTGTTAAGAATGGGAGTTATCCCAATCGTGAATGAGAACG
ACACTACTGCGACTGAAGAACTAAAATACGGAGACAACGACTGGCTATCT
GCGTTGACAGCCAAGCCCATAAATATTGTCCCAAACATTGAATCTCTACA
GGTGAACCTTTCGTCAAATACAACAGGAACGCAATGGGGTACGGGAGGTA
TGAAGACCAAAATCACAGCCGCCCGTCTCGCGACAGCGGCTGGGGTGCGA
GTCTGTCTCATACACGGACGCTTCCCATCGCGTGCAGTGGACTTTGTGAG
AAACAGTGAGGATAAGTGTGGCACCGTGTTCGAGCCGTTGGGAAACCCGC
TTGCCGTTGAGCGCAAGAAGTGGATCTCCAACTGTCTTCCTCCTCGTGGG
GAGATCACAATCAACAAAGCTGCAGAATCAATGCTCCGAGCTGGTTACTC
CTTACGGACGAACGGAGTGATACGTTGTGCGCGAGATTTTGAAGAGAATT
CGGCTGTGACGATTTGCACCGAAAGCGGAATGGAGCTTGCACGTGGTATG
TGTAATTACTCAAGCCAGTTCCTGAACAAGTACGGCGGACGAAGCGCTCA
TGAGATCTCCAAGATGCTTTGCTTCCCCGTCAACGACGTTGTAGTCCATG
GTGACAATCTGGCGTTGTTGGTTGACTACTGTGAGCAGCACTGA
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protein sequence of Gcaud9304.t2

>Gcaud9304.t2 ID=Gcaud9304.t2|Name=Gcaud9304.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=448bp
MGNGRPFTRRWPTSRTSNCGISTRICPHSYWIVYQSRSRHLTVLSQNRAM
GQIDMSDTHSDSVYSVSPRPIIVVKIGTSTLMRDHNNANTATISSAAGRG
LSSGSGELAVSSIGLLVDTLLTLRRDGYDVILVTSGAVGVGCRELGVSER
PKVQDATSQEERARILADIQAYAAVGQSVLMRTYDALMGMANQKVAQILL
TSGDLSSEYQYINAKNTLSSLLRMGVIPIVNENDTTATEELKYGDNDWLS
ALTAKPINIVPNIESLQVNLSSNTTGTQWGTGGMKTKITAARLATAAGVR
VCLIHGRFPSRAVDFVRNSEDKCGTVFEPLGNPLAVERKKWISNCLPPRG
EITINKAAESMLRAGYSLRTNGVIRCARDFEENSAVTICTESGMELARGM
CNYSSQFLNKYGGRSAHEISKMLCFPVNDVVVHGDNLALLVDYCEQH*
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mRNA from alignment at NODE_1188_length_12866_cov_4.640157:8561..10051-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9304.t2 ID=Gcaud9304.t2|Name=Gcaud9304.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1491bp|location=Sequence derived from alignment at NODE_1188_length_12866_cov_4.640157:8561..10051- (Gracilaria caudata M_176_S67 male)
ATGGGCAACGGGAGACCGTTCACTCGTCGATGGCCCACGTCTCGAACATC
AAATTGCGGAATATCGACAAGAATCTGTCCACATTCTTATTGGATCGTCT
ATCAATCGCGATCTCGGCATCTAACTGTTCTTTCGCAGTAAGGCAACCGC
CCGAACCAGACTTCCTTTTTCTTCGAGCTGACCTCTCCATTAATCTTCAG
AAACCGTGCCATGGGTCAAATCGACATGTCCGACACGCACAGCGATTCGG
TTTATTCAGTTTCACCGCGACCAATAATCGTTGTGAAAATTGGAACCTCA
ACGCTTATGCGAGATCACAACAACGCCAACACCGCAACTATCTCTTCTGC
TGCTGGTAGGGGATTGAGCAGTGGATCAGGTGAACTTGCAGTTTCATCGA
TTGGCTTGCTAGTGGATACGCTTTTGACTCTGCGTCGAGACGGATATGAC
GTAATTCTGGTTACTTCGGGTGCCGTGGGTGTTGGATGCAGGGAACTTGG
TGTTTCTGAGCGCCCCAAAGTACAGGATGCCACATCTCAAGAAGAGCGGG
CCAGAATACTGGCTGACATACAAGCATATGCCGCCGTTGGTCAAAGCGTC
TTGATGCGCACGTACGATGCGCTTATGGGTATGGCGAACCAAAAAGTGGC
GCAGATTCTCTTAACAAGCGGAGATTTGAGCAGTGAATATCAGTATATCA
ATGCCAAGAATACGCTTTCTTCTTTGTTAAGAATGGGAGTTATCCCAATC
GTGAATGAGAACGACACTACTGCGACTGAAGAACTAAAATACGGAGACAA
CGACTGGCTATCTGCGTTGGTAAGCACATCTGTCGGCGCGGAATGGTTAT
TCTTGCTCACTGACGTTGACCAGCTCTACACCGCAAATCCTCGCGTTGAT
AAGACAGCCAAGCCCATAAATATTGTCCCAAACATTGAATCTCTACAGGT
GAACCTTTCGTCAAATACAACAGGAACGCAATGGGGTACGGGAGGTATGA
AGACCAAAATCACAGCCGCCCGTCTCGCGACAGCGGCTGGGGTGCGAGTC
TGTCTCATACACGGACGCTTCCCATCGCGTGCAGTGGACTTTGTGAGAAA
CAGTGAGGATAAGTGTGGCACCGTGTTCGAGCCGTTGGGAAACCCGCTTG
CCGTTGAGCGCAAGAAGTGGATCTCCAACTGTCTTCCTCCTCGTGGGGAG
ATCACAATCAACAAAGCTGCAGAATCAATGCTCCGAGCTGGTTACTCCTT
ACGGACGAACGGAGTGATACGTTGTGCGCGAGATTTTGAAGAGAATTCGG
CTGTGACGATTTGCACCGAAAGCGGAATGGAGCTTGCACGTGGTATGTGT
AATTACTCAAGCCAGTTCCTGAACAAGTACGGCGGACGAAGCGCTCATGA
GATCTCCAAGATGCTTTGCTTCCCCGTCAACGACGTTGTAGTCCATGGTG
ACAATCTGGCGTTGTTGGTTGACTACTGTGAGCAGCACTGA
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Coding sequence (CDS) from alignment at NODE_1188_length_12866_cov_4.640157:8561..10051-

>Gcaud9304.t2 ID=Gcaud9304.t2|Name=Gcaud9304.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1344bp|location=Sequence derived from alignment at NODE_1188_length_12866_cov_4.640157:8561..10051- (Gracilaria caudata M_176_S67 male)
ATGGGCAACGGGAGACCGTTCACTCGTCGATGGCCCACGTCTCGAACATC
AAATTGCGGAATATCGACAAGAATCTGTCCACATTCTTATTGGATCGTCT
ATCAATCGCGATCTCGGCATCTAACTGTTCTTTCGCAAAACCGTGCCATG
GGTCAAATCGACATGTCCGACACGCACAGCGATTCGGTTTATTCAGTTTC
ACCGCGACCAATAATCGTTGTGAAAATTGGAACCTCAACGCTTATGCGAG
ATCACAACAACGCCAACACCGCAACTATCTCTTCTGCTGCTGGTAGGGGA
TTGAGCAGTGGATCAGGTGAACTTGCAGTTTCATCGATTGGCTTGCTAGT
GGATACGCTTTTGACTCTGCGTCGAGACGGATATGACGTAATTCTGGTTA
CTTCGGGTGCCGTGGGTGTTGGATGCAGGGAACTTGGTGTTTCTGAGCGC
CCCAAAGTACAGGATGCCACATCTCAAGAAGAGCGGGCCAGAATACTGGC
TGACATACAAGCATATGCCGCCGTTGGTCAAAGCGTCTTGATGCGCACGT
ACGATGCGCTTATGGGTATGGCGAACCAAAAAGTGGCGCAGATTCTCTTA
ACAAGCGGAGATTTGAGCAGTGAATATCAGTATATCAATGCCAAGAATAC
GCTTTCTTCTTTGTTAAGAATGGGAGTTATCCCAATCGTGAATGAGAACG
ACACTACTGCGACTGAAGAACTAAAATACGGAGACAACGACTGGCTATCT
GCGTTGACAGCCAAGCCCATAAATATTGTCCCAAACATTGAATCTCTACA
GGTGAACCTTTCGTCAAATACAACAGGAACGCAATGGGGTACGGGAGGTA
TGAAGACCAAAATCACAGCCGCCCGTCTCGCGACAGCGGCTGGGGTGCGA
GTCTGTCTCATACACGGACGCTTCCCATCGCGTGCAGTGGACTTTGTGAG
AAACAGTGAGGATAAGTGTGGCACCGTGTTCGAGCCGTTGGGAAACCCGC
TTGCCGTTGAGCGCAAGAAGTGGATCTCCAACTGTCTTCCTCCTCGTGGG
GAGATCACAATCAACAAAGCTGCAGAATCAATGCTCCGAGCTGGTTACTC
CTTACGGACGAACGGAGTGATACGTTGTGCGCGAGATTTTGAAGAGAATT
CGGCTGTGACGATTTGCACCGAAAGCGGAATGGAGCTTGCACGTGGTATG
TGTAATTACTCAAGCCAGTTCCTGAACAAGTACGGCGGACGAAGCGCTCA
TGAGATCTCCAAGATGCTTTGCTTCCCCGTCAACGACGTTGTAGTCCATG
GTGACAATCTGGCGTTGTTGGTTGACTACTGTGAGCAGCACTGA
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