Gcaud9277.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9277.t1
Unique NameGcaud9277.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length439
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_694_length_19564_cov_4.578750contigNODE_694_length_19564_cov_4.578750:8545..10330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1122223.KB890687_gene2740
Max annot lvl1297|Deinococcus-Thermus
Evalue1.12e-09
EggNOG OGsCOG3506@1|root,COG3506@2|Bacteria,1WNDA@1297|Deinococcus-Thermus
DescriptionProtein of unknown function (DUF1349)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9277Gcaud9277Gracilaria caudata M_176_S67 malegeneNODE_694_length_19564_cov_4.578750 8545..10330 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9277.t1Gcaud9277.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_694_length_19564_cov_4.578750 8545..10330 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9277.t1.stop1Gcaud9277.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_694_length_19564_cov_4.578750 8545..8547 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9277.t1.CDS1Gcaud9277.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_694_length_19564_cov_4.578750 8545..9088 -
Gcaud9277.t1.CDS2Gcaud9277.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_694_length_19564_cov_4.578750 9464..9466 -
Gcaud9277.t1.CDS3Gcaud9277.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_694_length_19564_cov_4.578750 9561..10330 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9277.t1.exon1Gcaud9277.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_694_length_19564_cov_4.578750 8545..9088 -
Gcaud9277.t1.exon2Gcaud9277.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_694_length_19564_cov_4.578750 9464..9466 -
Gcaud9277.t1.exon3Gcaud9277.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_694_length_19564_cov_4.578750 9561..10330 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9277.t1.intron1Gcaud9277.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_694_length_19564_cov_4.578750 9089..9463 -
Gcaud9277.t1.intron2Gcaud9277.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_694_length_19564_cov_4.578750 9467..9560 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9277.t1.start1Gcaud9277.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_694_length_19564_cov_4.578750 10328..10330 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9277.t1 ID=Gcaud9277.t1|Name=Gcaud9277.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=439bp
MATYILVLVHFLLVKLVTSMPLTCADHPAYSDALNPVLVSSWTVLNGNIL
TEGVYFPRYTAHRFAPISDKSSMIYHGLDWFYASNFGQPATDDFIRLNLH
RDAKIFMVIGVRYDRSLPLVTLPGWSSEGWVERVDGEKEFVYGVHQKDSK
WLPTRAYIFSKPASGSATLPPLNWVERKISGATGVGGWYIMIAESDGTPS
KTPAQPAGVSEAIVPNQRCPDALHNMWVTPEVDTSDPDVSGRMWPTWHPQ
WDPCFWCANKRSVNVINVDALNPAYEYNDDLMRGKYEEWTTNTICSVDGH
YGMLTMDIRNPITAIVSPERADESVNLGIVKDGVMTRNDGSSRLVRFRHF
KFGDEYCNKLLPDVSGDRSADGTFYTDASGSKLMSGPSSTSIRQFVKPGF
KIEISGDYEVVDSFGDEFIPDTRAGRSSNGYGIDPNVN*
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spliced messenger RNA

>Gcaud9277.t1 ID=Gcaud9277.t1|Name=Gcaud9277.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1317bp|location=Sequence derived from alignment at NODE_694_length_19564_cov_4.578750:8545..10330- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGACCTATATCCTCGTGCTCGTTCACTTCCTTCTCGTCAAGCTCGT
AACGTCTATGCCCTTAACATGTGCGGATCATCCAGCATACTCTGACGCTT
TGAACCCGGTCCTTGTATCGTCATGGACAGTTCTCAACGGCAACATCCTG
ACGGAGGGAGTGTACTTTCCACGGTATACGGCTCACCGTTTTGCTCCCAT
TTCTGACAAGTCCTCCATGATCTACCACGGACTAGACTGGTTTTATGCCT
CAAACTTCGGTCAGCCCGCCACGGACGACTTCATTCGCCTGAACCTCCAC
CGCGACGCAAAGATCTTCATGGTGATCGGCGTGCGCTATGATCGTTCGCT
TCCACTTGTAACTCTACCTGGCTGGAGTAGCGAAGGATGGGTGGAAAGAG
TGGATGGCGAAAAAGAGTTTGTGTATGGAGTGCATCAGAAGGATTCGAAA
TGGCTTCCGACTCGCGCATATATATTCTCCAAACCGGCAAGTGGCAGTGC
TACTCTTCCTCCTCTGAACTGGGTTGAGAGGAAAATTTCTGGGGCGACAG
GTGTTGGAGGGTGGTACATTATGATCGCTGAAAGTGATGGAACGCCCTCA
AAAACCCCTGCACAACCAGCGGGGGTGTCTGAAGCTATTGTGCCAAACCA
GAGGTGTCCCGACGCTCTTCACAATATGTGGGTAACCCCCGAAGTCGACA
CCTCGGATCCGGATGTGAGCGGAAGGATGTGGCCTACTTGGCATCCACAG
TGGGATCCATGTTTCTGGTGTGCCAACAAACGCTCAGTGAATGTTATCAA
CGTCGATGCTCTCAACCCCGCATATGAGTACAACGATGATCTCATGCGAG
GAAAGTATGAAGAGTGGACCACAAATACTATCTGCTCTGTTGATGGTCAC
TATGGCATGCTCACCATGGACATCAGGAACCCGATCACTGCCATTGTATC
GCCAGAACGGGCTGACGAAAGTGTGAACCTTGGAATTGTGAAGGATGGGG
TGATGACTAGAAACGATGGATCTTCTCGACTCGTTCGCTTCCGGCATTTC
AAGTTCGGTGACGAGTACTGCAACAAACTTCTTCCTGACGTGTCGGGAGA
CCGTTCGGCTGATGGAACGTTCTATACAGATGCGAGTGGTAGCAAGTTGA
TGAGTGGACCGAGCAGTACTAGCATACGTCAATTTGTGAAGCCTGGTTTC
AAGATAGAAATTAGTGGTGATTATGAAGTTGTGGATTCCTTTGGTGACGA
GTTTATTCCGGACACCCGTGCTGGCCGGAGTAGCAATGGATACGGGATAG
ATCCGAATGTGAACTGA
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protein sequence of Gcaud9277.t1

>Gcaud9277.t1 ID=Gcaud9277.t1|Name=Gcaud9277.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=439bp
MATYILVLVHFLLVKLVTSMPLTCADHPAYSDALNPVLVSSWTVLNGNIL
TEGVYFPRYTAHRFAPISDKSSMIYHGLDWFYASNFGQPATDDFIRLNLH
RDAKIFMVIGVRYDRSLPLVTLPGWSSEGWVERVDGEKEFVYGVHQKDSK
WLPTRAYIFSKPASGSATLPPLNWVERKISGATGVGGWYIMIAESDGTPS
KTPAQPAGVSEAIVPNQRCPDALHNMWVTPEVDTSDPDVSGRMWPTWHPQ
WDPCFWCANKRSVNVINVDALNPAYEYNDDLMRGKYEEWTTNTICSVDGH
YGMLTMDIRNPITAIVSPERADESVNLGIVKDGVMTRNDGSSRLVRFRHF
KFGDEYCNKLLPDVSGDRSADGTFYTDASGSKLMSGPSSTSIRQFVKPGF
KIEISGDYEVVDSFGDEFIPDTRAGRSSNGYGIDPNVN*
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mRNA from alignment at NODE_694_length_19564_cov_4.578750:8545..10330-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9277.t1 ID=Gcaud9277.t1|Name=Gcaud9277.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1786bp|location=Sequence derived from alignment at NODE_694_length_19564_cov_4.578750:8545..10330- (Gracilaria caudata M_176_S67 male)
ATGGCGACCTATATCCTCGTGCTCGTTCACTTCCTTCTCGTCAAGCTCGT
AACGTCTATGCCCTTAACATGTGCGGATCATCCAGCATACTCTGACGCTT
TGAACCCGGTCCTTGTATCGTCATGGACAGTTCTCAACGGCAACATCCTG
ACGGAGGGAGTGTACTTTCCACGGTATACGGCTCACCGTTTTGCTCCCAT
TTCTGACAAGTCCTCCATGATCTACCACGGACTAGACTGGTTTTATGCCT
CAAACTTCGGTCAGCCCGCCACGGACGACTTCATTCGCCTGAACCTCCAC
CGCGACGCAAAGATCTTCATGGTGATCGGCGTGCGCTATGATCGTTCGCT
TCCACTTGTAACTCTACCTGGCTGGAGTAGCGAAGGATGGGTGGAAAGAG
TGGATGGCGAAAAAGAGTTTGTGTATGGAGTGCATCAGAAGGATTCGAAA
TGGCTTCCGACTCGCGCATATATATTCTCCAAACCGGCAAGTGGCAGTGC
TACTCTTCCTCCTCTGAACTGGGTTGAGAGGAAAATTTCTGGGGCGACAG
GTGTTGGAGGGTGGTACATTATGATCGCTGAAAGTGATGGAACGCCCTCA
AAAACCCCTGCACAACCAGCGGGGGTGTCTGAAGCTATTGTGCCAAACCA
GAGGTGTCCCGACGCTCTTCACAATATGTGGGTAACCCCCGAAGTCGACA
CCTCGGATCCGGATGTGAGCGGAAGGATGTGGCCTACTTGGCATCCACAG
TGGGATCCATGTTTCTGGTGGTAAGTTCTTTCATTACGATTCTTTTTCAG
TCCTTCAAATCTTCTCATGATAACTAACAGCTTTGCTATCTTATCTCGAT
ATCGTTTACCGTAGTGCGTATGACCATGAGCACGGATCTTCGACTACGGC
TCTGATGAATTATGCTCCAAGGTTCGGGTACACTCCGTGGAAGAATGATA
GGGAAGATGAGTCACATGAGGGCTTCAAATGTGCCGTGTTTCGAACGGGG
TCGAACTATGTGTGCTTCTGCATTCATGCACAGACGTCCAGTCTACGACG
TGTGGGACTTCGCACCCATACAATTATTTTCGCGGTTGCCGATGCAAAGA
CGAAGGAGTTGCTTGCTGAAGTGACTCACAAGGGTTTCTTTGGCTTCACT
GGGACGAGGAAGAGGGAAGGCTTTTTCTTGGGTTTGACAAAGGAGGAGGA
GGATATGAGAATCGCTCTGTGGGATGACCAGGGACATTCAAGCAACAAAC
GCTCAGTGAATGTTATCAACGTCGATGCTCTCAACCCCGCATATGAGTAC
AACGATGATCTCATGCGAGGAAAGTATGAAGAGTGGACCACAAATACTAT
CTGCTCTGTTGATGGTCACTATGGCATGCTCACCATGGACATCAGGAACC
CGATCACTGCCATTGTATCGCCAGAACGGGCTGACGAAAGTGTGAACCTT
GGAATTGTGAAGGATGGGGTGATGACTAGAAACGATGGATCTTCTCGACT
CGTTCGCTTCCGGCATTTCAAGTTCGGTGACGAGTACTGCAACAAACTTC
TTCCTGACGTGTCGGGAGACCGTTCGGCTGATGGAACGTTCTATACAGAT
GCGAGTGGTAGCAAGTTGATGAGTGGACCGAGCAGTACTAGCATACGTCA
ATTTGTGAAGCCTGGTTTCAAGATAGAAATTAGTGGTGATTATGAAGTTG
TGGATTCCTTTGGTGACGAGTTTATTCCGGACACCCGTGCTGGCCGGAGT
AGCAATGGATACGGGATAGATCCGAATGTGAACTGA
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Coding sequence (CDS) from alignment at NODE_694_length_19564_cov_4.578750:8545..10330-

>Gcaud9277.t1 ID=Gcaud9277.t1|Name=Gcaud9277.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1317bp|location=Sequence derived from alignment at NODE_694_length_19564_cov_4.578750:8545..10330- (Gracilaria caudata M_176_S67 male)
ATGGCGACCTATATCCTCGTGCTCGTTCACTTCCTTCTCGTCAAGCTCGT
AACGTCTATGCCCTTAACATGTGCGGATCATCCAGCATACTCTGACGCTT
TGAACCCGGTCCTTGTATCGTCATGGACAGTTCTCAACGGCAACATCCTG
ACGGAGGGAGTGTACTTTCCACGGTATACGGCTCACCGTTTTGCTCCCAT
TTCTGACAAGTCCTCCATGATCTACCACGGACTAGACTGGTTTTATGCCT
CAAACTTCGGTCAGCCCGCCACGGACGACTTCATTCGCCTGAACCTCCAC
CGCGACGCAAAGATCTTCATGGTGATCGGCGTGCGCTATGATCGTTCGCT
TCCACTTGTAACTCTACCTGGCTGGAGTAGCGAAGGATGGGTGGAAAGAG
TGGATGGCGAAAAAGAGTTTGTGTATGGAGTGCATCAGAAGGATTCGAAA
TGGCTTCCGACTCGCGCATATATATTCTCCAAACCGGCAAGTGGCAGTGC
TACTCTTCCTCCTCTGAACTGGGTTGAGAGGAAAATTTCTGGGGCGACAG
GTGTTGGAGGGTGGTACATTATGATCGCTGAAAGTGATGGAACGCCCTCA
AAAACCCCTGCACAACCAGCGGGGGTGTCTGAAGCTATTGTGCCAAACCA
GAGGTGTCCCGACGCTCTTCACAATATGTGGGTAACCCCCGAAGTCGACA
CCTCGGATCCGGATGTGAGCGGAAGGATGTGGCCTACTTGGCATCCACAG
TGGGATCCATGTTTCTGGTGTGCCAACAAACGCTCAGTGAATGTTATCAA
CGTCGATGCTCTCAACCCCGCATATGAGTACAACGATGATCTCATGCGAG
GAAAGTATGAAGAGTGGACCACAAATACTATCTGCTCTGTTGATGGTCAC
TATGGCATGCTCACCATGGACATCAGGAACCCGATCACTGCCATTGTATC
GCCAGAACGGGCTGACGAAAGTGTGAACCTTGGAATTGTGAAGGATGGGG
TGATGACTAGAAACGATGGATCTTCTCGACTCGTTCGCTTCCGGCATTTC
AAGTTCGGTGACGAGTACTGCAACAAACTTCTTCCTGACGTGTCGGGAGA
CCGTTCGGCTGATGGAACGTTCTATACAGATGCGAGTGGTAGCAAGTTGA
TGAGTGGACCGAGCAGTACTAGCATACGTCAATTTGTGAAGCCTGGTTTC
AAGATAGAAATTAGTGGTGATTATGAAGTTGTGGATTCCTTTGGTGACGA
GTTTATTCCGGACACCCGTGCTGGCCGGAGTAGCAATGGATACGGGATAG
ATCCGAATGTGAACTGA
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