Gcaud9276.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9276.t1
Unique NameGcaud9276.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length440
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_694_length_19564_cov_4.578750contigNODE_694_length_19564_cov_4.578750:5836..7622 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1122223.KB890687_gene2740
Max annot lvl1297|Deinococcus-Thermus
Evalue8.48e-10
EggNOG OGsCOG3506@1|root,COG3506@2|Bacteria,1WNDA@1297|Deinococcus-Thermus
DescriptionProtein of unknown function (DUF1349)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9276Gcaud9276Gracilaria caudata M_176_S67 malegeneNODE_694_length_19564_cov_4.578750 5836..7622 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9276.t1Gcaud9276.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_694_length_19564_cov_4.578750 5836..7622 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9276.t1.stop1Gcaud9276.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_694_length_19564_cov_4.578750 5836..5838 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9276.t1.CDS1Gcaud9276.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_694_length_19564_cov_4.578750 5836..6379 -
Gcaud9276.t1.CDS2Gcaud9276.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_694_length_19564_cov_4.578750 6752..6754 -
Gcaud9276.t1.CDS3Gcaud9276.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_694_length_19564_cov_4.578750 6850..7622 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9276.t1.exon1Gcaud9276.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_694_length_19564_cov_4.578750 5836..6379 -
Gcaud9276.t1.exon2Gcaud9276.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_694_length_19564_cov_4.578750 6752..6754 -
Gcaud9276.t1.exon3Gcaud9276.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_694_length_19564_cov_4.578750 6850..7622 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9276.t1.intron1Gcaud9276.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_694_length_19564_cov_4.578750 6380..6751 -
Gcaud9276.t1.intron2Gcaud9276.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_694_length_19564_cov_4.578750 6755..6849 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9276.t1.start1Gcaud9276.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_694_length_19564_cov_4.578750 7620..7622 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9276.t1 ID=Gcaud9276.t1|Name=Gcaud9276.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=440bp
MAIYLLILFHFLLVQFVDSTPLTCADHPAYFQALNPVLVSSWTVLNGNNQ
TEGVYYPRYSAHRFAPISNKSSMIYNGLDWFYASNYDEPATDKFIRLNLH
RDAMIFLVIGVSYDSEHPHVTLPGWNSEGWVERIDDLENEFVYGVHQNNS
KWLPRHAYILSRPATNSATLPLLNWVKRKISGATGVGGWYIMIAERDGTP
SKPPAQPATVTETILPNQRCPDALHNRWVTPEVDTSDPDVSGRMWPTWHP
QWDPCFWCANKRSVNVINVDALNPAYDYNDDLMRGQYEEWTTNTICSVDG
HYGMLTMDIRNPITAIVSPERANESVNLGIVKNGVMTRNDGSSRLVRFRQ
FKFGEDYCNLLLRDPLGDLSVNGTFYTDAIGSKLMSGPSSASIRQFVKPG
LKIDITGDYEVVDPWGGELVLDTPAARSSNGYGIDPNVN*
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spliced messenger RNA

>Gcaud9276.t1 ID=Gcaud9276.t1|Name=Gcaud9276.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1320bp|location=Sequence derived from alignment at NODE_694_length_19564_cov_4.578750:5836..7622- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGATCTATCTACTCATACTCTTTCATTTCCTTCTCGTCCAATTCGT
AGATTCTACGCCCTTAACATGTGCGGATCATCCAGCATATTTTCAGGCTT
TGAACCCGGTCCTTGTATCGTCATGGACAGTTCTCAACGGCAATAATCAG
ACTGAAGGAGTGTACTATCCACGGTATAGTGCTCATCGTTTTGCTCCTAT
TTCTAACAAGTCCTCCATGATCTACAACGGTCTAGACTGGTTTTATGCTT
CAAACTATGACGAACCCGCCACGGACAAGTTCATTCGCCTGAACCTTCAT
CGTGACGCAATGATCTTTTTGGTGATCGGCGTGTCCTATGACAGTGAACA
TCCACATGTAACTCTACCAGGTTGGAACAGCGAGGGGTGGGTAGAAAGAA
TTGATGATCTTGAAAACGAGTTTGTGTATGGAGTGCATCAGAACAACTCT
AAATGGCTTCCCCGTCACGCGTATATACTTTCGAGACCAGCTACAAACAG
TGCTACTCTTCCTCTTCTGAACTGGGTTAAGCGAAAAATTTCTGGGGCAA
CAGGTGTTGGGGGATGGTACATTATGATAGCAGAAAGAGATGGAACGCCA
TCAAAACCCCCTGCACAACCAGCAACGGTGACAGAAACTATTCTGCCAAA
CCAGAGGTGTCCTGACGCTCTTCACAATAGGTGGGTGACCCCCGAAGTCG
ATACCTCGGATCCGGATGTGAGCGGAAGGATGTGGCCTACTTGGCATCCG
CAGTGGGACCCATGCTTCTGGTGTGCCAACAAGCGCTCAGTGAATGTCAT
CAACGTCGATGCTCTCAACCCCGCATATGATTACAATGATGATCTTATGC
GAGGACAGTATGAAGAATGGACCACAAATACTATCTGTTCTGTTGATGGT
CACTATGGCATGCTCACAATGGACATCAGGAACCCAATCACTGCCATTGT
ATCTCCAGAACGGGCTAACGAAAGTGTGAACCTTGGAATTGTGAAGAATG
GGGTGATGACTAGAAACGATGGGTCCTCCCGGCTCGTGCGGTTCAGACAG
TTCAAGTTCGGTGAGGATTATTGCAACCTCCTTCTTCGTGATCCGTTGGG
AGACCTTTCGGTTAATGGAACGTTTTATACAGATGCGATTGGTAGCAAGT
TGATGAGTGGACCGAGCAGTGCCAGCATCCGACAATTCGTGAAGCCGGGT
CTCAAGATAGATATTACTGGTGATTACGAAGTTGTGGATCCTTGGGGTGG
GGAGTTGGTTCTGGACACTCCGGCCGCCCGGAGTAGCAATGGATACGGGA
TAGATCCGAATGTGAACTGA
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protein sequence of Gcaud9276.t1

>Gcaud9276.t1 ID=Gcaud9276.t1|Name=Gcaud9276.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=440bp
MAIYLLILFHFLLVQFVDSTPLTCADHPAYFQALNPVLVSSWTVLNGNNQ
TEGVYYPRYSAHRFAPISNKSSMIYNGLDWFYASNYDEPATDKFIRLNLH
RDAMIFLVIGVSYDSEHPHVTLPGWNSEGWVERIDDLENEFVYGVHQNNS
KWLPRHAYILSRPATNSATLPLLNWVKRKISGATGVGGWYIMIAERDGTP
SKPPAQPATVTETILPNQRCPDALHNRWVTPEVDTSDPDVSGRMWPTWHP
QWDPCFWCANKRSVNVINVDALNPAYDYNDDLMRGQYEEWTTNTICSVDG
HYGMLTMDIRNPITAIVSPERANESVNLGIVKNGVMTRNDGSSRLVRFRQ
FKFGEDYCNLLLRDPLGDLSVNGTFYTDAIGSKLMSGPSSASIRQFVKPG
LKIDITGDYEVVDPWGGELVLDTPAARSSNGYGIDPNVN*
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mRNA from alignment at NODE_694_length_19564_cov_4.578750:5836..7622-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9276.t1 ID=Gcaud9276.t1|Name=Gcaud9276.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1787bp|location=Sequence derived from alignment at NODE_694_length_19564_cov_4.578750:5836..7622- (Gracilaria caudata M_176_S67 male)
ATGGCGATCTATCTACTCATACTCTTTCATTTCCTTCTCGTCCAATTCGT
AGATTCTACGCCCTTAACATGTGCGGATCATCCAGCATATTTTCAGGCTT
TGAACCCGGTCCTTGTATCGTCATGGACAGTTCTCAACGGCAATAATCAG
ACTGAAGGAGTGTACTATCCACGGTATAGTGCTCATCGTTTTGCTCCTAT
TTCTAACAAGTCCTCCATGATCTACAACGGTCTAGACTGGTTTTATGCTT
CAAACTATGACGAACCCGCCACGGACAAGTTCATTCGCCTGAACCTTCAT
CGTGACGCAATGATCTTTTTGGTGATCGGCGTGTCCTATGACAGTGAACA
TCCACATGTAACTCTACCAGGTTGGAACAGCGAGGGGTGGGTAGAAAGAA
TTGATGATCTTGAAAACGAGTTTGTGTATGGAGTGCATCAGAACAACTCT
AAATGGCTTCCCCGTCACGCGTATATACTTTCGAGACCAGCTACAAACAG
TGCTACTCTTCCTCTTCTGAACTGGGTTAAGCGAAAAATTTCTGGGGCAA
CAGGTGTTGGGGGATGGTACATTATGATAGCAGAAAGAGATGGAACGCCA
TCAAAACCCCCTGCACAACCAGCAACGGTGACAGAAACTATTCTGCCAAA
CCAGAGGTGTCCTGACGCTCTTCACAATAGGTGGGTGACCCCCGAAGTCG
ATACCTCGGATCCGGATGTGAGCGGAAGGATGTGGCCTACTTGGCATCCG
CAGTGGGACCCATGCTTCTGGTGGTAAGTTCCTTCATTAAGATTCTTTTT
GAATCCTTCAAATCTTCTCATCATAACTGACACCTTTGCTTCCTTGTCTC
CAATATCGATTACCGTAGTGCGTATGACCATGAGCACGGATCTTCGCCTC
TTGCTGTGATGAATTATGCTCCAAGGTTCGGCTACACTCCATGGAAGAAT
GATAGGGAAGATGAGTCACATGAGGGATTTAAGTGCTCCGTGTTTCGAAC
TGGATCATACTATGTGTGCTTCTGCATCCATGCACAGACATCTACACTAC
GTCGTGTGGGACTTCGCTACCATACGATTATCTTCGCAATTTCAAATGCC
GAGACGAAGGAGTTGCTTGCTGAAGTGACTCACAAGGGCTTCTTCGGCTT
CACTGGGACGAGGAAGAAAGAAGGCTTTTTCATGGGTCTTACAAAGGAGG
AGGAGCATATGAGAGTCGCTCTGTGGGAGGATGCATATTCAAGCAACAAG
CGCTCAGTGAATGTCATCAACGTCGATGCTCTCAACCCCGCATATGATTA
CAATGATGATCTTATGCGAGGACAGTATGAAGAATGGACCACAAATACTA
TCTGTTCTGTTGATGGTCACTATGGCATGCTCACAATGGACATCAGGAAC
CCAATCACTGCCATTGTATCTCCAGAACGGGCTAACGAAAGTGTGAACCT
TGGAATTGTGAAGAATGGGGTGATGACTAGAAACGATGGGTCCTCCCGGC
TCGTGCGGTTCAGACAGTTCAAGTTCGGTGAGGATTATTGCAACCTCCTT
CTTCGTGATCCGTTGGGAGACCTTTCGGTTAATGGAACGTTTTATACAGA
TGCGATTGGTAGCAAGTTGATGAGTGGACCGAGCAGTGCCAGCATCCGAC
AATTCGTGAAGCCGGGTCTCAAGATAGATATTACTGGTGATTACGAAGTT
GTGGATCCTTGGGGTGGGGAGTTGGTTCTGGACACTCCGGCCGCCCGGAG
TAGCAATGGATACGGGATAGATCCGAATGTGAACTGA
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Coding sequence (CDS) from alignment at NODE_694_length_19564_cov_4.578750:5836..7622-

>Gcaud9276.t1 ID=Gcaud9276.t1|Name=Gcaud9276.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1320bp|location=Sequence derived from alignment at NODE_694_length_19564_cov_4.578750:5836..7622- (Gracilaria caudata M_176_S67 male)
ATGGCGATCTATCTACTCATACTCTTTCATTTCCTTCTCGTCCAATTCGT
AGATTCTACGCCCTTAACATGTGCGGATCATCCAGCATATTTTCAGGCTT
TGAACCCGGTCCTTGTATCGTCATGGACAGTTCTCAACGGCAATAATCAG
ACTGAAGGAGTGTACTATCCACGGTATAGTGCTCATCGTTTTGCTCCTAT
TTCTAACAAGTCCTCCATGATCTACAACGGTCTAGACTGGTTTTATGCTT
CAAACTATGACGAACCCGCCACGGACAAGTTCATTCGCCTGAACCTTCAT
CGTGACGCAATGATCTTTTTGGTGATCGGCGTGTCCTATGACAGTGAACA
TCCACATGTAACTCTACCAGGTTGGAACAGCGAGGGGTGGGTAGAAAGAA
TTGATGATCTTGAAAACGAGTTTGTGTATGGAGTGCATCAGAACAACTCT
AAATGGCTTCCCCGTCACGCGTATATACTTTCGAGACCAGCTACAAACAG
TGCTACTCTTCCTCTTCTGAACTGGGTTAAGCGAAAAATTTCTGGGGCAA
CAGGTGTTGGGGGATGGTACATTATGATAGCAGAAAGAGATGGAACGCCA
TCAAAACCCCCTGCACAACCAGCAACGGTGACAGAAACTATTCTGCCAAA
CCAGAGGTGTCCTGACGCTCTTCACAATAGGTGGGTGACCCCCGAAGTCG
ATACCTCGGATCCGGATGTGAGCGGAAGGATGTGGCCTACTTGGCATCCG
CAGTGGGACCCATGCTTCTGGTGTGCCAACAAGCGCTCAGTGAATGTCAT
CAACGTCGATGCTCTCAACCCCGCATATGATTACAATGATGATCTTATGC
GAGGACAGTATGAAGAATGGACCACAAATACTATCTGTTCTGTTGATGGT
CACTATGGCATGCTCACAATGGACATCAGGAACCCAATCACTGCCATTGT
ATCTCCAGAACGGGCTAACGAAAGTGTGAACCTTGGAATTGTGAAGAATG
GGGTGATGACTAGAAACGATGGGTCCTCCCGGCTCGTGCGGTTCAGACAG
TTCAAGTTCGGTGAGGATTATTGCAACCTCCTTCTTCGTGATCCGTTGGG
AGACCTTTCGGTTAATGGAACGTTTTATACAGATGCGATTGGTAGCAAGT
TGATGAGTGGACCGAGCAGTGCCAGCATCCGACAATTCGTGAAGCCGGGT
CTCAAGATAGATATTACTGGTGATTACGAAGTTGTGGATCCTTGGGGTGG
GGAGTTGGTTCTGGACACTCCGGCCGCCCGGAGTAGCAATGGATACGGGA
TAGATCCGAATGTGAACTGA
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