Gcaud9243.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9243.t1
Unique Name	Gcaud9243.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	450

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_384_length_27336_cov_4.346963	contig	NODE_384_length_27336_cov_4.346963:16896..18245 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9243	Gcaud9243	Gracilaria caudata M_176_S67 male	gene	NODE_384_length_27336_cov_4.346963 16896..18245 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9243.t1.stop1	Gcaud9243.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_384_length_27336_cov_4.346963 16896..16898 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9243.t1.CDS1	Gcaud9243.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_384_length_27336_cov_4.346963 16896..18245 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9243.t1.exon1	Gcaud9243.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_384_length_27336_cov_4.346963 16896..18245 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9243.t1.start1	Gcaud9243.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_384_length_27336_cov_4.346963 18243..18245 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9243.t1	Gcaud9243.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_384_length_27336_cov_4.346963 16896..18245 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_384_length_27336_cov_4.346963:16896..18245-
coding sequence from alignment at NODE_384_length_27336_cov_4.346963:16896..18245-

mRNA sequence

>Gcaud9243.t1 ID=Gcaud9243.t1|Name=Gcaud9243.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=450bp
MVGELSALSGMDAILPGEGVPVWGAVDALQKLYDAVGPGMPKGLKSTSIP
SPLSDAKVLTYNYDEGHAGRLSVPGTPGGSVEFDWVLSHPDFHKLVLTDL
AFKDVDAAKEEYSEEAIMNFFVPGLNTLHQPSEGETSTMERMVHYAKVLL
TIPMAQIHIGTSFDQGDVNIDASRAPLLRALFSGHGSDMPGSVKPDFDDG
KTFSWNCRQVDNVQLALSQQNTIDTPVKEDVRDLLKTTKDENGKPFVLIG
YSRGSIECEAALRKYIGDCSRVEKKEDIEARLRERVTVLTVGSASHEFPD
GPAYIHLAAWTDPLSRTSGITAKNNAEGAGKDAVFLNCSSPYHHDSFDNH
NFGVITSQFLSLVLEASKAKNLRDLWEKAQAGEMVIPDDADRVTRAMIQM
TKGYEWLWDTGRAWKDIPMGALPNPEEAERLLRERMGDSFVDRIRRNFP*

spliced messenger RNA

>Gcaud9243.t1 ID=Gcaud9243.t1|Name=Gcaud9243.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1350bp|location=Sequence derived from alignment at NODE_384_length_27336_cov_4.346963:16896..18245- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGGGGAACTCTCAGCTCTCTCCGGTATGGATGCCATTCTCCCAGG
AGAAGGCGTTCCGGTATGGGGGGCAGTGGATGCTTTGCAGAAGCTGTATG
ATGCGGTGGGTCCGGGTATGCCCAAGGGATTGAAATCCACCTCTATCCCA
TCACCTCTATCCGATGCAAAAGTGTTGACATACAATTACGATGAAGGTCA
TGCGGGACGTTTGAGCGTGCCTGGCACTCCGGGAGGATCTGTTGAGTTCG
ATTGGGTCCTCTCTCACCCTGATTTCCATAAACTTGTGCTTACCGATTTA
GCCTTCAAAGATGTAGATGCTGCAAAGGAAGAATACTCAGAAGAAGCAAT
CATGAACTTTTTCGTGCCGGGATTGAACACGCTACATCAGCCTTCGGAAG
GAGAAACGTCTACCATGGAAAGAATGGTGCACTACGCCAAAGTTCTCCTA
ACGATACCGATGGCTCAGATTCACATTGGTACCTCGTTTGATCAAGGTGA
TGTGAATATCGATGCTTCACGTGCCCCTCTGCTTCGAGCGCTGTTCAGTG
GGCATGGAAGCGACATGCCGGGTTCGGTGAAACCGGATTTTGATGACGGC
AAAACATTTTCTTGGAACTGCAGGCAAGTAGACAACGTTCAACTTGCACT
ATCGCAGCAAAACACGATTGATACCCCTGTAAAGGAAGATGTTCGTGATC
TTCTTAAAACCACAAAAGATGAGAACGGGAAGCCCTTCGTGTTGATAGGA
TACAGTCGAGGTTCGATTGAGTGTGAAGCCGCTCTCCGAAAGTACATTGG
TGATTGTAGTAGGGTGGAGAAGAAGGAAGATATTGAAGCCCGGCTTCGTG
AGCGTGTGACAGTACTCACTGTTGGTAGTGCTTCACATGAATTCCCAGAC
GGACCTGCCTATATTCACCTTGCTGCATGGACTGATCCACTCTCGAGGAC
GAGTGGTATTACTGCGAAGAACAACGCGGAGGGAGCCGGAAAGGATGCCG
TATTCCTGAACTGTTCCTCCCCCTATCATCATGATTCGTTCGATAATCAT
AATTTTGGTGTGATTACCTCACAGTTTTTGTCACTCGTCCTTGAGGCAAG
TAAGGCTAAGAACCTTCGAGACCTCTGGGAAAAAGCGCAAGCGGGCGAGA
TGGTCATCCCAGACGACGCGGATCGAGTCACAAGAGCTATGATTCAGATG
ACTAAAGGTTATGAATGGCTGTGGGATACCGGAAGGGCATGGAAAGACAT
CCCCATGGGAGCGTTGCCTAACCCTGAGGAAGCCGAAAGGCTTCTCAGGG
AGAGGATGGGTGATTCGTTCGTAGACCGCATTAGGCGTAACTTCCCGTGA

protein sequence of Gcaud9243.t1

>Gcaud9243.t1 ID=Gcaud9243.t1|Name=Gcaud9243.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=450bp
MVGELSALSGMDAILPGEGVPVWGAVDALQKLYDAVGPGMPKGLKSTSIP
SPLSDAKVLTYNYDEGHAGRLSVPGTPGGSVEFDWVLSHPDFHKLVLTDL
AFKDVDAAKEEYSEEAIMNFFVPGLNTLHQPSEGETSTMERMVHYAKVLL
TIPMAQIHIGTSFDQGDVNIDASRAPLLRALFSGHGSDMPGSVKPDFDDG
KTFSWNCRQVDNVQLALSQQNTIDTPVKEDVRDLLKTTKDENGKPFVLIG
YSRGSIECEAALRKYIGDCSRVEKKEDIEARLRERVTVLTVGSASHEFPD
GPAYIHLAAWTDPLSRTSGITAKNNAEGAGKDAVFLNCSSPYHHDSFDNH
NFGVITSQFLSLVLEASKAKNLRDLWEKAQAGEMVIPDDADRVTRAMIQM
TKGYEWLWDTGRAWKDIPMGALPNPEEAERLLRERMGDSFVDRIRRNFP*

mRNA from alignment at NODE_384_length_27336_cov_4.346963:16896..18245-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9243.t1 ID=Gcaud9243.t1|Name=Gcaud9243.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1350bp|location=Sequence derived from alignment at NODE_384_length_27336_cov_4.346963:16896..18245- (Gracilaria caudata M_176_S67 male)
ATGGTTGGGGAACTCTCAGCTCTCTCCGGTATGGATGCCATTCTCCCAGG
AGAAGGCGTTCCGGTATGGGGGGCAGTGGATGCTTTGCAGAAGCTGTATG
ATGCGGTGGGTCCGGGTATGCCCAAGGGATTGAAATCCACCTCTATCCCA
TCACCTCTATCCGATGCAAAAGTGTTGACATACAATTACGATGAAGGTCA
TGCGGGACGTTTGAGCGTGCCTGGCACTCCGGGAGGATCTGTTGAGTTCG
ATTGGGTCCTCTCTCACCCTGATTTCCATAAACTTGTGCTTACCGATTTA
GCCTTCAAAGATGTAGATGCTGCAAAGGAAGAATACTCAGAAGAAGCAAT
CATGAACTTTTTCGTGCCGGGATTGAACACGCTACATCAGCCTTCGGAAG
GAGAAACGTCTACCATGGAAAGAATGGTGCACTACGCCAAAGTTCTCCTA
ACGATACCGATGGCTCAGATTCACATTGGTACCTCGTTTGATCAAGGTGA
TGTGAATATCGATGCTTCACGTGCCCCTCTGCTTCGAGCGCTGTTCAGTG
GGCATGGAAGCGACATGCCGGGTTCGGTGAAACCGGATTTTGATGACGGC
AAAACATTTTCTTGGAACTGCAGGCAAGTAGACAACGTTCAACTTGCACT
ATCGCAGCAAAACACGATTGATACCCCTGTAAAGGAAGATGTTCGTGATC
TTCTTAAAACCACAAAAGATGAGAACGGGAAGCCCTTCGTGTTGATAGGA
TACAGTCGAGGTTCGATTGAGTGTGAAGCCGCTCTCCGAAAGTACATTGG
TGATTGTAGTAGGGTGGAGAAGAAGGAAGATATTGAAGCCCGGCTTCGTG
AGCGTGTGACAGTACTCACTGTTGGTAGTGCTTCACATGAATTCCCAGAC
GGACCTGCCTATATTCACCTTGCTGCATGGACTGATCCACTCTCGAGGAC
GAGTGGTATTACTGCGAAGAACAACGCGGAGGGAGCCGGAAAGGATGCCG
TATTCCTGAACTGTTCCTCCCCCTATCATCATGATTCGTTCGATAATCAT
AATTTTGGTGTGATTACCTCACAGTTTTTGTCACTCGTCCTTGAGGCAAG
TAAGGCTAAGAACCTTCGAGACCTCTGGGAAAAAGCGCAAGCGGGCGAGA
TGGTCATCCCAGACGACGCGGATCGAGTCACAAGAGCTATGATTCAGATG
ACTAAAGGTTATGAATGGCTGTGGGATACCGGAAGGGCATGGAAAGACAT
CCCCATGGGAGCGTTGCCTAACCCTGAGGAAGCCGAAAGGCTTCTCAGGG
AGAGGATGGGTGATTCGTTCGTAGACCGCATTAGGCGTAACTTCCCGTGA

Coding sequence (CDS) from alignment at NODE_384_length_27336_cov_4.346963:16896..18245-

>Gcaud9243.t1 ID=Gcaud9243.t1|Name=Gcaud9243.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1350bp|location=Sequence derived from alignment at NODE_384_length_27336_cov_4.346963:16896..18245- (Gracilaria caudata M_176_S67 male)
ATGGTTGGGGAACTCTCAGCTCTCTCCGGTATGGATGCCATTCTCCCAGG
AGAAGGCGTTCCGGTATGGGGGGCAGTGGATGCTTTGCAGAAGCTGTATG
ATGCGGTGGGTCCGGGTATGCCCAAGGGATTGAAATCCACCTCTATCCCA
TCACCTCTATCCGATGCAAAAGTGTTGACATACAATTACGATGAAGGTCA
TGCGGGACGTTTGAGCGTGCCTGGCACTCCGGGAGGATCTGTTGAGTTCG
ATTGGGTCCTCTCTCACCCTGATTTCCATAAACTTGTGCTTACCGATTTA
GCCTTCAAAGATGTAGATGCTGCAAAGGAAGAATACTCAGAAGAAGCAAT
CATGAACTTTTTCGTGCCGGGATTGAACACGCTACATCAGCCTTCGGAAG
GAGAAACGTCTACCATGGAAAGAATGGTGCACTACGCCAAAGTTCTCCTA
ACGATACCGATGGCTCAGATTCACATTGGTACCTCGTTTGATCAAGGTGA
TGTGAATATCGATGCTTCACGTGCCCCTCTGCTTCGAGCGCTGTTCAGTG
GGCATGGAAGCGACATGCCGGGTTCGGTGAAACCGGATTTTGATGACGGC
AAAACATTTTCTTGGAACTGCAGGCAAGTAGACAACGTTCAACTTGCACT
ATCGCAGCAAAACACGATTGATACCCCTGTAAAGGAAGATGTTCGTGATC
TTCTTAAAACCACAAAAGATGAGAACGGGAAGCCCTTCGTGTTGATAGGA
TACAGTCGAGGTTCGATTGAGTGTGAAGCCGCTCTCCGAAAGTACATTGG
TGATTGTAGTAGGGTGGAGAAGAAGGAAGATATTGAAGCCCGGCTTCGTG
AGCGTGTGACAGTACTCACTGTTGGTAGTGCTTCACATGAATTCCCAGAC
GGACCTGCCTATATTCACCTTGCTGCATGGACTGATCCACTCTCGAGGAC
GAGTGGTATTACTGCGAAGAACAACGCGGAGGGAGCCGGAAAGGATGCCG
TATTCCTGAACTGTTCCTCCCCCTATCATCATGATTCGTTCGATAATCAT
AATTTTGGTGTGATTACCTCACAGTTTTTGTCACTCGTCCTTGAGGCAAG
TAAGGCTAAGAACCTTCGAGACCTCTGGGAAAAAGCGCAAGCGGGCGAGA
TGGTCATCCCAGACGACGCGGATCGAGTCACAAGAGCTATGATTCAGATG
ACTAAAGGTTATGAATGGCTGTGGGATACCGGAAGGGCATGGAAAGACAT
CCCCATGGGAGCGTTGCCTAACCCTGAGGAAGCCGAAAGGCTTCTCAGGG
AGAGGATGGGTGATTCGTTCGTAGACCGCATTAGGCGTAACTTCCCGTGA