Gcaud9175.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9175.t1
Unique NameGcaud9175.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length316
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_526_length_22991_cov_4.374716contigNODE_526_length_22991_cov_4.374716:17379..18420 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog38833.XP_003059223.1
PFAMsAbhydrolase_2
Max annot lvl3041|Chlorophyta
KEGG rclassRC00037,RC00094
KEGG koko:K06130
KEGG ReactionR02747,R03417
KEGG Pathwayko00564,map00564
Evalue3.83e-30
EggNOG OGsCOG0400@1|root,KOG2112@2759|Eukaryota,37JY6@33090|Viridiplantae,34KQG@3041|Chlorophyta
EC3.1.1.5
DescriptionPhospholipase/Carboxylesterase
COG categoryI
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9175Gcaud9175Gracilaria caudata M_176_S67 malegeneNODE_526_length_22991_cov_4.374716 17379..18420 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9175.t1Gcaud9175.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_526_length_22991_cov_4.374716 17379..18420 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9175.t1.stop1Gcaud9175.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_526_length_22991_cov_4.374716 17379..17381 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9175.t1.CDS1Gcaud9175.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_526_length_22991_cov_4.374716 17379..17639 -
Gcaud9175.t1.CDS2Gcaud9175.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_526_length_22991_cov_4.374716 17734..18420 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9175.t1.exon1Gcaud9175.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_526_length_22991_cov_4.374716 17379..17639 -
Gcaud9175.t1.exon2Gcaud9175.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_526_length_22991_cov_4.374716 17734..18420 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9175.t1.intron1Gcaud9175.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_526_length_22991_cov_4.374716 17640..17733 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9175.t1.start1Gcaud9175.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_526_length_22991_cov_4.374716 18418..18420 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9175.t1 ID=Gcaud9175.t1|Name=Gcaud9175.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=316bp
MHFASLRAFWLLLLAFVACAAVADDELRRPILLPLSADRQPVDGDGHGGS
GFTVMPVLRDEQPATVIILHGMGATGEAWGYLSLALSFFSLNYVKFVIPT
APVARVTYLDRQLSSWYDIRTFRQTVAADISSLSQQQLSNIVDINREQFD
ASIDRVSSIIDGEIRLGVNPRRIFLLGFSQGGSLALHAFLRSTKSLAGAI
GVATWVPFIQEYPSAMSAATRNRPMLLMHGTEDTAVPYQYAQYLAQRLDT
FRDHINFTTFRGEPHVMLNVQVVDAIERFVLQHAPGTVRYLNTLVEDLTE
KFASLSSRLESVPNI*
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spliced messenger RNA

>Gcaud9175.t1 ID=Gcaud9175.t1|Name=Gcaud9175.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=948bp|location=Sequence derived from alignment at NODE_526_length_22991_cov_4.374716:17379..18420- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACTTCGCCTCTCTCCGCGCCTTCTGGCTGCTGCTGCTTGCTTTCGT
GGCGTGCGCTGCTGTGGCTGATGACGAGCTGCGACGACCGATTTTGCTGC
CGCTTTCCGCCGACAGACAGCCCGTTGACGGTGACGGCCATGGCGGTTCC
GGATTCACAGTCATGCCCGTTTTGCGCGATGAACAGCCCGCCACCGTAAT
CATCTTGCACGGAATGGGCGCCACAGGAGAGGCCTGGGGTTACCTCAGTC
TGGCCTTGTCCTTTTTCTCCCTCAATTACGTCAAGTTCGTCATCCCCACC
GCCCCGGTTGCGCGCGTGACCTATCTGGATAGGCAGCTCAGTAGCTGGTA
TGACATCCGTACGTTTAGGCAGACAGTCGCCGCGGACATCTCCTCTTTGT
CGCAGCAGCAGCTCTCGAATATTGTTGATATTAATCGCGAGCAGTTTGAT
GCCTCGATTGACAGAGTTTCGTCCATTATTGACGGCGAGATTCGACTCGG
CGTGAACCCCAGACGCATTTTCCTTCTTGGCTTCAGTCAAGGTGGCTCGC
TTGCACTGCACGCGTTTTTGAGAAGCACCAAGTCCTTGGCGGGCGCAATA
GGTGTTGCTACATGGGTGCCTTTTATACAAGAGTACCCTTCCGCTATGTC
CGCTGCCACTCGTAATCGTCCCATGCTATTGATGCACGGAACGGAAGATA
CAGCCGTACCATATCAATACGCGCAGTATCTGGCGCAGCGATTAGATACA
TTCCGCGACCATATTAACTTCACCACCTTCCGCGGCGAGCCGCACGTTAT
GCTCAACGTCCAAGTGGTTGACGCCATCGAACGCTTTGTCTTGCAACACG
CCCCGGGCACAGTGCGTTACCTAAATACGCTTGTTGAAGACCTCACCGAA
AAGTTTGCAAGTTTATCCTCACGATTAGAATCAGTGCCTAATATATAG
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protein sequence of Gcaud9175.t1

>Gcaud9175.t1 ID=Gcaud9175.t1|Name=Gcaud9175.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=316bp
MHFASLRAFWLLLLAFVACAAVADDELRRPILLPLSADRQPVDGDGHGGS
GFTVMPVLRDEQPATVIILHGMGATGEAWGYLSLALSFFSLNYVKFVIPT
APVARVTYLDRQLSSWYDIRTFRQTVAADISSLSQQQLSNIVDINREQFD
ASIDRVSSIIDGEIRLGVNPRRIFLLGFSQGGSLALHAFLRSTKSLAGAI
GVATWVPFIQEYPSAMSAATRNRPMLLMHGTEDTAVPYQYAQYLAQRLDT
FRDHINFTTFRGEPHVMLNVQVVDAIERFVLQHAPGTVRYLNTLVEDLTE
KFASLSSRLESVPNI*
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mRNA from alignment at NODE_526_length_22991_cov_4.374716:17379..18420-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9175.t1 ID=Gcaud9175.t1|Name=Gcaud9175.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1042bp|location=Sequence derived from alignment at NODE_526_length_22991_cov_4.374716:17379..18420- (Gracilaria caudata M_176_S67 male)
ATGCACTTCGCCTCTCTCCGCGCCTTCTGGCTGCTGCTGCTTGCTTTCGT
GGCGTGCGCTGCTGTGGCTGATGACGAGCTGCGACGACCGATTTTGCTGC
CGCTTTCCGCCGACAGACAGCCCGTTGACGGTGACGGCCATGGCGGTTCC
GGATTCACAGTCATGCCCGTTTTGCGCGATGAACAGCCCGCCACCGTAAT
CATCTTGCACGGAATGGGCGCCACAGGAGAGGCCTGGGGTTACCTCAGTC
TGGCCTTGTCCTTTTTCTCCCTCAATTACGTCAAGTTCGTCATCCCCACC
GCCCCGGTTGCGCGCGTGACCTATCTGGATAGGCAGCTCAGTAGCTGGTA
TGACATCCGTACGTTTAGGCAGACAGTCGCCGCGGACATCTCCTCTTTGT
CGCAGCAGCAGCTCTCGAATATTGTTGATATTAATCGCGAGCAGTTTGAT
GCCTCGATTGACAGAGTTTCGTCCATTATTGACGGCGAGATTCGACTCGG
CGTGAACCCCAGACGCATTTTCCTTCTTGGCTTCAGTCAAGGTGGCTCGC
TTGCACTGCACGCGTTTTTGAGAAGCACCAAGTCCTTGGCGGGCGCAATA
GGTGTTGCTACATGGGTGCCTTTTATACAAGAGTACCCTTCCGCTATGTC
CGCTGCCACTCGTAATCGTCCCATGCTATTGATGCACGTATGTTTCCACA
CCTTCCGCTCTCACTATAGCTCTTTTCCTTTACTTCATGCTCTCGTTTCT
GACTAACTGTGTACCCATTCGCGGAAAACAGGGAACGGAAGATACAGCCG
TACCATATCAATACGCGCAGTATCTGGCGCAGCGATTAGATACATTCCGC
GACCATATTAACTTCACCACCTTCCGCGGCGAGCCGCACGTTATGCTCAA
CGTCCAAGTGGTTGACGCCATCGAACGCTTTGTCTTGCAACACGCCCCGG
GCACAGTGCGTTACCTAAATACGCTTGTTGAAGACCTCACCGAAAAGTTT
GCAAGTTTATCCTCACGATTAGAATCAGTGCCTAATATATAG
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Coding sequence (CDS) from alignment at NODE_526_length_22991_cov_4.374716:17379..18420-

>Gcaud9175.t1 ID=Gcaud9175.t1|Name=Gcaud9175.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=948bp|location=Sequence derived from alignment at NODE_526_length_22991_cov_4.374716:17379..18420- (Gracilaria caudata M_176_S67 male)
ATGCACTTCGCCTCTCTCCGCGCCTTCTGGCTGCTGCTGCTTGCTTTCGT
GGCGTGCGCTGCTGTGGCTGATGACGAGCTGCGACGACCGATTTTGCTGC
CGCTTTCCGCCGACAGACAGCCCGTTGACGGTGACGGCCATGGCGGTTCC
GGATTCACAGTCATGCCCGTTTTGCGCGATGAACAGCCCGCCACCGTAAT
CATCTTGCACGGAATGGGCGCCACAGGAGAGGCCTGGGGTTACCTCAGTC
TGGCCTTGTCCTTTTTCTCCCTCAATTACGTCAAGTTCGTCATCCCCACC
GCCCCGGTTGCGCGCGTGACCTATCTGGATAGGCAGCTCAGTAGCTGGTA
TGACATCCGTACGTTTAGGCAGACAGTCGCCGCGGACATCTCCTCTTTGT
CGCAGCAGCAGCTCTCGAATATTGTTGATATTAATCGCGAGCAGTTTGAT
GCCTCGATTGACAGAGTTTCGTCCATTATTGACGGCGAGATTCGACTCGG
CGTGAACCCCAGACGCATTTTCCTTCTTGGCTTCAGTCAAGGTGGCTCGC
TTGCACTGCACGCGTTTTTGAGAAGCACCAAGTCCTTGGCGGGCGCAATA
GGTGTTGCTACATGGGTGCCTTTTATACAAGAGTACCCTTCCGCTATGTC
CGCTGCCACTCGTAATCGTCCCATGCTATTGATGCACGGAACGGAAGATA
CAGCCGTACCATATCAATACGCGCAGTATCTGGCGCAGCGATTAGATACA
TTCCGCGACCATATTAACTTCACCACCTTCCGCGGCGAGCCGCACGTTAT
GCTCAACGTCCAAGTGGTTGACGCCATCGAACGCTTTGTCTTGCAACACG
CCCCGGGCACAGTGCGTTACCTAAATACGCTTGTTGAAGACCTCACCGAA
AAGTTTGCAAGTTTATCCTCACGATTAGAATCAGTGCCTAATATATAG
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