Gcaud9174.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9174.t1
Unique Name	Gcaud9174.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	391

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_526_length_22991_cov_4.374716	contig	NODE_526_length_22991_cov_4.374716:15907..17291 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9174	Gcaud9174	Gracilaria caudata M_176_S67 male	gene	NODE_526_length_22991_cov_4.374716 15907..17291 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9174.t1	Gcaud9174.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_526_length_22991_cov_4.374716 15907..17291 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9174.t1.start1	Gcaud9174.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_526_length_22991_cov_4.374716 15907..15909 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9174.t1.CDS1	Gcaud9174.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_526_length_22991_cov_4.374716 15907..16539 +
Gcaud9174.t1.CDS2	Gcaud9174.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_526_length_22991_cov_4.374716 16664..17079 +
Gcaud9174.t1.CDS3	Gcaud9174.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_526_length_22991_cov_4.374716 17168..17291 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9174.t1.exon1	Gcaud9174.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_526_length_22991_cov_4.374716 15907..16539 +
Gcaud9174.t1.exon2	Gcaud9174.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_526_length_22991_cov_4.374716 16664..17079 +
Gcaud9174.t1.exon3	Gcaud9174.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_526_length_22991_cov_4.374716 17168..17291 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9174.t1.intron1	Gcaud9174.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_526_length_22991_cov_4.374716 16540..16663 +
Gcaud9174.t1.intron2	Gcaud9174.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_526_length_22991_cov_4.374716 17080..17167 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9174.t1.stop1	Gcaud9174.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_526_length_22991_cov_4.374716 17289..17291 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_526_length_22991_cov_4.374716:15907..17291+
coding sequence from alignment at NODE_526_length_22991_cov_4.374716:15907..17291+

mRNA sequence

>Gcaud9174.t1 ID=Gcaud9174.t1|Name=Gcaud9174.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=391bp
MAPLLTEGQLRPLQHANGWLSLLLLATVILHLFFARLFRGNKRGNTLSFF
VIVPTYLSALLLIVCMLAVLSLFIHRLLTAPDLAGANDELILTFIALGAL
AYSGLLGCDRRRRNVAVKLASIPCFGNGEHSSSHQLLAVEKTPMLCFAPQ
FIAPQEAPVMEQVSEDASPSHSPSSTDRHSKSAGIKKSTFLEISCRTAHT
WVFGRPKRQAWPLNVVRTYRTVGKRFVLIKDQTVQDGAGSVLLSPTFLLS
NELDKLMIARAVHEAMYRSAPCILHSVHDKFEASLLDRFSQLPAVICMLT
GDLRQQVQKRSSRAYTSTERCYLTEVLWAIIVVEILDYLQRKRRDMPVLT
PGGIVASGFYALVIPNAVVITHFRTRVVAVNAHVCVAVRE*

spliced messenger RNA

>Gcaud9174.t1 ID=Gcaud9174.t1|Name=Gcaud9174.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1173bp|location=Sequence derived from alignment at NODE_526_length_22991_cov_4.374716:15907..17291+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCTCTGTTGACTGAAGGTCAATTACGTCCTCTGCAGCATGCAAA
TGGCTGGTTATCGTTGCTGTTGCTGGCGACCGTGATCCTTCACTTGTTCT
TTGCGCGCTTGTTCAGGGGCAATAAGCGAGGGAATACCCTTTCGTTCTTC
GTGATTGTTCCCACATACCTCAGCGCGTTGTTGCTCATTGTTTGTATGCT
TGCCGTGCTATCTCTATTCATACATCGTCTCTTGACGGCGCCCGACCTAG
CAGGCGCAAACGACGAGCTTATCCTCACTTTCATCGCGCTAGGCGCTCTC
GCGTACTCTGGATTACTAGGATGTGATCGACGACGGAGAAACGTTGCAGT
TAAGCTGGCCAGTATTCCGTGCTTTGGCAATGGGGAGCACTCCAGTTCAC
ATCAGTTGCTGGCCGTGGAGAAGACGCCTATGCTGTGCTTTGCACCGCAG
TTTATCGCGCCACAAGAGGCGCCGGTCATGGAGCAAGTTTCTGAAGATGC
CTCTCCATCGCACTCGCCTTCTTCTACTGATCGTCATTCTAAGTCGGCTG
GAATCAAAAAGAGTACTTTTCTGGAGATCTCCTGTCGGACTGCTCACACC
TGGGTGTTTGGACGCCCGAAACGTCAAGCATGGCCTCTCAACGTAGTCCG
CACCTATCGCACCGTCGGAAAACGTTTTGTACTTATCAAAGATCAGACTG
TACAAGACGGTGCCGGCTCTGTGTTGCTGTCGCCCACTTTTCTTCTGTCA
AACGAACTGGACAAGCTAATGATTGCACGAGCCGTTCACGAAGCTATGTA
TCGTTCTGCGCCATGTATTCTACATTCCGTGCATGATAAGTTCGAGGCCA
GTCTGCTCGACCGATTTTCGCAGCTACCCGCCGTGATCTGTATGTTGACA
GGTGATCTAAGGCAACAAGTACAAAAACGCTCTTCGCGGGCATACACGAG
TACGGAGCGATGTTATCTGACCGAGGTGTTGTGGGCGATCATCGTGGTGG
AGATTTTAGACTACTTGCAACGCAAGCGACGCGACATGCCGGTTTTGACG
CCGGGAGGAATTGTGGCAAGTGGGTTCTACGCCCTTGTGATACCGAATGC
TGTTGTCATAACTCATTTTCGCACACGGGTTGTGGCTGTCAATGCCCATG
TGTGTGTAGCTGTGCGTGAGTGA

protein sequence of Gcaud9174.t1

>Gcaud9174.t1 ID=Gcaud9174.t1|Name=Gcaud9174.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=391bp
MAPLLTEGQLRPLQHANGWLSLLLLATVILHLFFARLFRGNKRGNTLSFF
VIVPTYLSALLLIVCMLAVLSLFIHRLLTAPDLAGANDELILTFIALGAL
AYSGLLGCDRRRRNVAVKLASIPCFGNGEHSSSHQLLAVEKTPMLCFAPQ
FIAPQEAPVMEQVSEDASPSHSPSSTDRHSKSAGIKKSTFLEISCRTAHT
WVFGRPKRQAWPLNVVRTYRTVGKRFVLIKDQTVQDGAGSVLLSPTFLLS
NELDKLMIARAVHEAMYRSAPCILHSVHDKFEASLLDRFSQLPAVICMLT
GDLRQQVQKRSSRAYTSTERCYLTEVLWAIIVVEILDYLQRKRRDMPVLT
PGGIVASGFYALVIPNAVVITHFRTRVVAVNAHVCVAVRE*

mRNA from alignment at NODE_526_length_22991_cov_4.374716:15907..17291+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9174.t1 ID=Gcaud9174.t1|Name=Gcaud9174.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1385bp|location=Sequence derived from alignment at NODE_526_length_22991_cov_4.374716:15907..17291+ (Gracilaria caudata M_176_S67 male)
ATGGCTCCTCTGTTGACTGAAGGTCAATTACGTCCTCTGCAGCATGCAAA
TGGCTGGTTATCGTTGCTGTTGCTGGCGACCGTGATCCTTCACTTGTTCT
TTGCGCGCTTGTTCAGGGGCAATAAGCGAGGGAATACCCTTTCGTTCTTC
GTGATTGTTCCCACATACCTCAGCGCGTTGTTGCTCATTGTTTGTATGCT
TGCCGTGCTATCTCTATTCATACATCGTCTCTTGACGGCGCCCGACCTAG
CAGGCGCAAACGACGAGCTTATCCTCACTTTCATCGCGCTAGGCGCTCTC
GCGTACTCTGGATTACTAGGATGTGATCGACGACGGAGAAACGTTGCAGT
TAAGCTGGCCAGTATTCCGTGCTTTGGCAATGGGGAGCACTCCAGTTCAC
ATCAGTTGCTGGCCGTGGAGAAGACGCCTATGCTGTGCTTTGCACCGCAG
TTTATCGCGCCACAAGAGGCGCCGGTCATGGAGCAAGTTTCTGAAGATGC
CTCTCCATCGCACTCGCCTTCTTCTACTGATCGTCATTCTAAGTCGGCTG
GAATCAAAAAGAGTACTTTTCTGGAGATCTCCTGTCGGACTGCTCACACC
TGGGTGTTTGGACGCCCGAAACGTCAAGCATGGGTACGTTTAGTCGCATG
CCACTGTTGTTCATCTTTGTCTTTTGTTATTCGAAACAACTCATGTTTGC
TGACATTCGTGTACTTCTCCTTTCCCTATTGTGCTACACCGCATGTATGA
TTCACAGCCTCTCAACGTAGTCCGCACCTATCGCACCGTCGGAAAACGTT
TTGTACTTATCAAAGATCAGACTGTACAAGACGGTGCCGGCTCTGTGTTG
CTGTCGCCCACTTTTCTTCTGTCAAACGAACTGGACAAGCTAATGATTGC
ACGAGCCGTTCACGAAGCTATGTATCGTTCTGCGCCATGTATTCTACATT
CCGTGCATGATAAGTTCGAGGCCAGTCTGCTCGACCGATTTTCGCAGCTA
CCCGCCGTGATCTGTATGTTGACAGGTGATCTAAGGCAACAAGTACAAAA
ACGCTCTTCGCGGGCATACACGAGTACGGAGCGATGTTATCTGACCGAGG
TGTTGTGGGCGATCATCGTGGTGGAGATTTTAGACTACTTGCAACGCAAG
CGACGCGACATGCCGGTTTTGACGTGGTTCATCGACTTGCCAAAGTGGCT
TTGTCAGAATGACGGCAGCACCATTGACGGCGAAATGGACGCTCTGTTCG
AAGCTTGGAAGGCCGGGAGGAATTGTGGCAAGTGGGTTCTACGCCCTTGT
GATACCGAATGCTGTTGTCATAACTCATTTTCGCACACGGGTTGTGGCTG
TCAATGCCCATGTGTGTGTAGCTGTGCGTGAGTGA

Coding sequence (CDS) from alignment at NODE_526_length_22991_cov_4.374716:15907..17291+

>Gcaud9174.t1 ID=Gcaud9174.t1|Name=Gcaud9174.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1173bp|location=Sequence derived from alignment at NODE_526_length_22991_cov_4.374716:15907..17291+ (Gracilaria caudata M_176_S67 male)
ATGGCTCCTCTGTTGACTGAAGGTCAATTACGTCCTCTGCAGCATGCAAA
TGGCTGGTTATCGTTGCTGTTGCTGGCGACCGTGATCCTTCACTTGTTCT
TTGCGCGCTTGTTCAGGGGCAATAAGCGAGGGAATACCCTTTCGTTCTTC
GTGATTGTTCCCACATACCTCAGCGCGTTGTTGCTCATTGTTTGTATGCT
TGCCGTGCTATCTCTATTCATACATCGTCTCTTGACGGCGCCCGACCTAG
CAGGCGCAAACGACGAGCTTATCCTCACTTTCATCGCGCTAGGCGCTCTC
GCGTACTCTGGATTACTAGGATGTGATCGACGACGGAGAAACGTTGCAGT
TAAGCTGGCCAGTATTCCGTGCTTTGGCAATGGGGAGCACTCCAGTTCAC
ATCAGTTGCTGGCCGTGGAGAAGACGCCTATGCTGTGCTTTGCACCGCAG
TTTATCGCGCCACAAGAGGCGCCGGTCATGGAGCAAGTTTCTGAAGATGC
CTCTCCATCGCACTCGCCTTCTTCTACTGATCGTCATTCTAAGTCGGCTG
GAATCAAAAAGAGTACTTTTCTGGAGATCTCCTGTCGGACTGCTCACACC
TGGGTGTTTGGACGCCCGAAACGTCAAGCATGGCCTCTCAACGTAGTCCG
CACCTATCGCACCGTCGGAAAACGTTTTGTACTTATCAAAGATCAGACTG
TACAAGACGGTGCCGGCTCTGTGTTGCTGTCGCCCACTTTTCTTCTGTCA
AACGAACTGGACAAGCTAATGATTGCACGAGCCGTTCACGAAGCTATGTA
TCGTTCTGCGCCATGTATTCTACATTCCGTGCATGATAAGTTCGAGGCCA
GTCTGCTCGACCGATTTTCGCAGCTACCCGCCGTGATCTGTATGTTGACA
GGTGATCTAAGGCAACAAGTACAAAAACGCTCTTCGCGGGCATACACGAG
TACGGAGCGATGTTATCTGACCGAGGTGTTGTGGGCGATCATCGTGGTGG
AGATTTTAGACTACTTGCAACGCAAGCGACGCGACATGCCGGTTTTGACG
CCGGGAGGAATTGTGGCAAGTGGGTTCTACGCCCTTGTGATACCGAATGC
TGTTGTCATAACTCATTTTCGCACACGGGTTGTGGCTGTCAATGCCCATG
TGTGTGTAGCTGTGCGTGAGTGA