Gcaud9173.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9173.t1
Unique Name	Gcaud9173.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	343

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_526_length_22991_cov_4.374716	contig	NODE_526_length_22991_cov_4.374716:12919..14114 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	573065.Astex_2961
Preferred name	rnc
PFAMs	Ribonucleas_3_3,dsrm
Max annot lvl	204458\|Caulobacterales
KEGG ko	ko:K03685
KEGG Pathway	ko03008,ko05205,map03008,map05205
Evalue	6.22e-26
EggNOG OGs	COG0571@1\|root,COG0571@2\|Bacteria,1MUQ6@1224\|Proteobacteria,2TTIA@28211\|Alphaproteobacteria,2KGIJ@204458\|Caulobacterales
EC	3.1.26.3
Description	Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism
COG category	J
BRITE	ko00000,ko00001,ko01000,ko03009,ko03019,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9173	Gcaud9173	Gracilaria caudata M_176_S67 male	gene	NODE_526_length_22991_cov_4.374716 12919..14114 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9173.t1	Gcaud9173.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_526_length_22991_cov_4.374716 12919..14114 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9173.t1.start1	Gcaud9173.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_526_length_22991_cov_4.374716 12919..12921 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9173.t1.CDS1	Gcaud9173.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_526_length_22991_cov_4.374716 12919..13370 +
Gcaud9173.t1.CDS2	Gcaud9173.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_526_length_22991_cov_4.374716 13443..13524 +
Gcaud9173.t1.CDS3	Gcaud9173.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_526_length_22991_cov_4.374716 13620..14114 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9173.t1.exon1	Gcaud9173.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_526_length_22991_cov_4.374716 12919..13370 +
Gcaud9173.t1.exon2	Gcaud9173.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_526_length_22991_cov_4.374716 13443..13524 +
Gcaud9173.t1.exon3	Gcaud9173.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_526_length_22991_cov_4.374716 13620..14114 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9173.t1.intron1	Gcaud9173.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_526_length_22991_cov_4.374716 13371..13442 +
Gcaud9173.t1.intron2	Gcaud9173.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_526_length_22991_cov_4.374716 13525..13619 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9173.t1.stop1	Gcaud9173.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_526_length_22991_cov_4.374716 14112..14114 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_526_length_22991_cov_4.374716:12919..14114+
coding sequence from alignment at NODE_526_length_22991_cov_4.374716:12919..14114+

mRNA sequence

>Gcaud9173.t1 ID=Gcaud9173.t1|Name=Gcaud9173.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=343bp
MAFVVSSRLFHGRARVLDALSSAITSPCHVRRHTVVAKSRQRDQYVIAES
HLNRVETILQYKFANRALLAEALTHRSIVNASSSTQAFYEQAGNKILIRR
NNERLELLGDRVFGLVVVQALYNRDPNAPEGKISPISQTMVSRKSAREHS
ISLGLNAFLLENESLRGKEGSRYGDSFEALLGALFLDGGYDAAYNFYSSR
IMPTWDKHLDHTPGNVCQKRFLQEYLVQKGLPSPSIGTQLTYVTTHFEKE
DKVFTRAIKLFGRQVSEGKGVTVQSADQTAALLLLTRLKGLPDGRATCFL
IRLARQAADQYSLAKLQQTRSMQIASGNEGLECANAVDSKVA*

spliced messenger RNA

>Gcaud9173.t1 ID=Gcaud9173.t1|Name=Gcaud9173.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1029bp|location=Sequence derived from alignment at NODE_526_length_22991_cov_4.374716:12919..14114+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATTCGTTGTATCTTCTCGTCTGTTTCACGGTCGGGCTCGCGTTCT
AGACGCCTTGTCTTCCGCTATCACCTCTCCTTGCCACGTACGACGCCATA
CAGTCGTCGCAAAAAGCCGCCAACGGGACCAATACGTAATAGCGGAGTCA
CATCTGAACAGGGTCGAAACCATTCTTCAATACAAGTTTGCTAACCGCGC
TTTGTTAGCGGAGGCTCTGACTCATCGTTCGATCGTGAATGCTTCCTCAT
CCACTCAGGCCTTCTACGAACAAGCAGGCAACAAAATTCTGATCCGTCGT
AACAATGAACGACTTGAACTGCTCGGTGACCGTGTGTTTGGCCTTGTTGT
TGTTCAAGCCCTCTATAATCGAGATCCCAACGCACCAGAGGGCAAGATAA
GCCCCATTTCCCAAACCATGGTATCCAGAAAGTCTGCCAGAGAGCACAGT
ATCTCCCTTGGACTAAATGCCTTTCTTTTAGAGAATGAAAGCTTGCGTGG
CAAAGAAGGCTCACGGTATGGTGATTCCTTTGAGGCCCTGCTTGGAGCTT
TGTTTTTGGATGGAGGCTATGATGCCGCATACAACTTTTATTCCTCCCGA
ATAATGCCCACATGGGATAAACACCTTGACCACACTCCTGGAAACGTGTG
TCAGAAGCGTTTTCTGCAAGAATACCTCGTTCAAAAAGGCCTGCCGTCCC
CCAGCATCGGGACTCAGCTTACTTACGTTACGACACACTTCGAGAAAGAG
GATAAGGTCTTTACGAGGGCCATCAAATTATTCGGGCGACAAGTCAGCGA
GGGAAAAGGTGTTACTGTTCAGTCCGCCGATCAAACTGCTGCATTGCTTC
TTCTCACCCGTCTCAAAGGACTTCCAGATGGAAGAGCAACATGCTTTCTC
ATAAGACTCGCTCGGCAAGCAGCAGACCAGTATTCTTTAGCCAAGCTACA
GCAAACTAGATCGATGCAGATTGCATCGGGAAACGAAGGTCTCGAATGTG
CAAACGCTGTTGATTCGAAAGTTGCTTAG

protein sequence of Gcaud9173.t1

>Gcaud9173.t1 ID=Gcaud9173.t1|Name=Gcaud9173.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=343bp
MAFVVSSRLFHGRARVLDALSSAITSPCHVRRHTVVAKSRQRDQYVIAES
HLNRVETILQYKFANRALLAEALTHRSIVNASSSTQAFYEQAGNKILIRR
NNERLELLGDRVFGLVVVQALYNRDPNAPEGKISPISQTMVSRKSAREHS
ISLGLNAFLLENESLRGKEGSRYGDSFEALLGALFLDGGYDAAYNFYSSR
IMPTWDKHLDHTPGNVCQKRFLQEYLVQKGLPSPSIGTQLTYVTTHFEKE
DKVFTRAIKLFGRQVSEGKGVTVQSADQTAALLLLTRLKGLPDGRATCFL
IRLARQAADQYSLAKLQQTRSMQIASGNEGLECANAVDSKVA*

mRNA from alignment at NODE_526_length_22991_cov_4.374716:12919..14114+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9173.t1 ID=Gcaud9173.t1|Name=Gcaud9173.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1196bp|location=Sequence derived from alignment at NODE_526_length_22991_cov_4.374716:12919..14114+ (Gracilaria caudata M_176_S67 male)
ATGGCATTCGTTGTATCTTCTCGTCTGTTTCACGGTCGGGCTCGCGTTCT
AGACGCCTTGTCTTCCGCTATCACCTCTCCTTGCCACGTACGACGCCATA
CAGTCGTCGCAAAAAGCCGCCAACGGGACCAATACGTAATAGCGGAGTCA
CATCTGAACAGGGTCGAAACCATTCTTCAATACAAGTTTGCTAACCGCGC
TTTGTTAGCGGAGGCTCTGACTCATCGTTCGATCGTGAATGCTTCCTCAT
CCACTCAGGCCTTCTACGAACAAGCAGGCAACAAAATTCTGATCCGTCGT
AACAATGAACGACTTGAACTGCTCGGTGACCGTGTGTTTGGCCTTGTTGT
TGTTCAAGCCCTCTATAATCGAGATCCCAACGCACCAGAGGGCAAGATAA
GCCCCATTTCCCAAACCATGGTATCCAGAAAGTCTGCCAGAGAGCACAGT
ATGTACGTCTATATTTTCTTGTGTGCTGCGACTGTTCTATCTGCCAATAA
TACTTACATTCTACATAAGTTTAGCTCCCTTGGACTAAATGCCTTTCTTT
TAGAGAATGAAAGCTTGCGTGGCAAAGAAGGCTCACGGTATGGTGATTCC
TTTGAGGTTTGTTTGCCTACTCCAGTTTCTCATAGGTCGCCTTCTTTACT
GACCAGTTCGAACTCTCACTCTTCATGGGTGAACAAATTTCGGTTTGGAA
GGCCCTGCTTGGAGCTTTGTTTTTGGATGGAGGCTATGATGCCGCATACA
ACTTTTATTCCTCCCGAATAATGCCCACATGGGATAAACACCTTGACCAC
ACTCCTGGAAACGTGTGTCAGAAGCGTTTTCTGCAAGAATACCTCGTTCA
AAAAGGCCTGCCGTCCCCCAGCATCGGGACTCAGCTTACTTACGTTACGA
CACACTTCGAGAAAGAGGATAAGGTCTTTACGAGGGCCATCAAATTATTC
GGGCGACAAGTCAGCGAGGGAAAAGGTGTTACTGTTCAGTCCGCCGATCA
AACTGCTGCATTGCTTCTTCTCACCCGTCTCAAAGGACTTCCAGATGGAA
GAGCAACATGCTTTCTCATAAGACTCGCTCGGCAAGCAGCAGACCAGTAT
TCTTTAGCCAAGCTACAGCAAACTAGATCGATGCAGATTGCATCGGGAAA
CGAAGGTCTCGAATGTGCAAACGCTGTTGATTCGAAAGTTGCTTAG

Coding sequence (CDS) from alignment at NODE_526_length_22991_cov_4.374716:12919..14114+

>Gcaud9173.t1 ID=Gcaud9173.t1|Name=Gcaud9173.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1029bp|location=Sequence derived from alignment at NODE_526_length_22991_cov_4.374716:12919..14114+ (Gracilaria caudata M_176_S67 male)
ATGGCATTCGTTGTATCTTCTCGTCTGTTTCACGGTCGGGCTCGCGTTCT
AGACGCCTTGTCTTCCGCTATCACCTCTCCTTGCCACGTACGACGCCATA
CAGTCGTCGCAAAAAGCCGCCAACGGGACCAATACGTAATAGCGGAGTCA
CATCTGAACAGGGTCGAAACCATTCTTCAATACAAGTTTGCTAACCGCGC
TTTGTTAGCGGAGGCTCTGACTCATCGTTCGATCGTGAATGCTTCCTCAT
CCACTCAGGCCTTCTACGAACAAGCAGGCAACAAAATTCTGATCCGTCGT
AACAATGAACGACTTGAACTGCTCGGTGACCGTGTGTTTGGCCTTGTTGT
TGTTCAAGCCCTCTATAATCGAGATCCCAACGCACCAGAGGGCAAGATAA
GCCCCATTTCCCAAACCATGGTATCCAGAAAGTCTGCCAGAGAGCACAGT
ATCTCCCTTGGACTAAATGCCTTTCTTTTAGAGAATGAAAGCTTGCGTGG
CAAAGAAGGCTCACGGTATGGTGATTCCTTTGAGGCCCTGCTTGGAGCTT
TGTTTTTGGATGGAGGCTATGATGCCGCATACAACTTTTATTCCTCCCGA
ATAATGCCCACATGGGATAAACACCTTGACCACACTCCTGGAAACGTGTG
TCAGAAGCGTTTTCTGCAAGAATACCTCGTTCAAAAAGGCCTGCCGTCCC
CCAGCATCGGGACTCAGCTTACTTACGTTACGACACACTTCGAGAAAGAG
GATAAGGTCTTTACGAGGGCCATCAAATTATTCGGGCGACAAGTCAGCGA
GGGAAAAGGTGTTACTGTTCAGTCCGCCGATCAAACTGCTGCATTGCTTC
TTCTCACCCGTCTCAAAGGACTTCCAGATGGAAGAGCAACATGCTTTCTC
ATAAGACTCGCTCGGCAAGCAGCAGACCAGTATTCTTTAGCCAAGCTACA
GCAAACTAGATCGATGCAGATTGCATCGGGAAACGAAGGTCTCGAATGTG
CAAACGCTGTTGATTCGAAAGTTGCTTAG