Gcaud9166.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9166.t1
Unique Name	Gcaud9166.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	510

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1421_length_10791_cov_3.905047	contig	NODE_1421_length_10791_cov_3.905047:4683..6212 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1121921.KB898707_gene779
PFAMs	Big_2,UnbV_ASPIC,VCBS
Max annot lvl	1236\|Gammaproteobacteria
Evalue	9.08e-46
EggNOG OGs	COG2931@1\|root,COG5492@1\|root,COG2931@2\|Bacteria,COG5492@2\|Bacteria,1R7ZV@1224\|Proteobacteria,1RPUG@1236\|Gammaproteobacteria
Description	ASPIC and UnbV
COG category	Q

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9166	Gcaud9166	Gracilaria caudata M_176_S67 male	gene	NODE_1421_length_10791_cov_3.905047 4683..6212 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9166.t1.stop1	Gcaud9166.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1421_length_10791_cov_3.905047 4683..4685 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9166.t1.CDS1	Gcaud9166.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1421_length_10791_cov_3.905047 4683..6212 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9166.t1.exon1	Gcaud9166.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1421_length_10791_cov_3.905047 4683..6212 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9166.t1.start1	Gcaud9166.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1421_length_10791_cov_3.905047 6210..6212 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9166.t1	Gcaud9166.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1421_length_10791_cov_3.905047 4683..6212 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1421_length_10791_cov_3.905047:4683..6212-
coding sequence from alignment at NODE_1421_length_10791_cov_3.905047:4683..6212-

mRNA sequence

>Gcaud9166.t1 ID=Gcaud9166.t1|Name=Gcaud9166.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=510bp
MNLTSVLLHCVLVAALLSAVRAAKPVPSFKDVTVSAGIDLSRPKLKKYGA
PSVADLDRDGWPDLLFCHHDQTFEELYFNNRDGTFTKAQWGIWHDTHGLN
AWPVSPTTKTMRFSMSVGGNFGMDPNAPFVFEVDPATRAITRVDADAGLD
QFGGRGRSAIYLDLSQGRHPQFLDIIYTNALALDGTSQFAYEGIDGFKFK
PRQLKGGFEVSDNALALVTDVDNDGAVEIVAMWRLAMYKVTGDFELTDIT
DQVFPPDMPRTGVIAVAEIDFDNDGDFDLYVARHRVGPWLPDVAYHDVLL
ENRNGKYVDVSARAGVPRNTQSHGVTVGDFNNDGWMDIYVSQFTEPDFML
INIGGGVFRRLNGLTPDRPPNVRGDNAVAVDYDLDGRVDLVASQGDHNDI
ALGGSYRIFKNMLDTSEGNANYIHVRVGVPWDRSCTPMHATVLVNAGNLW
QKRRVGSPGTEVSNSYMETLHFGLGSRTEVTAIYVVYANGYVVMKRGVKH
GQTVLLGLL*

spliced messenger RNA

>Gcaud9166.t1 ID=Gcaud9166.t1|Name=Gcaud9166.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1530bp|location=Sequence derived from alignment at NODE_1421_length_10791_cov_3.905047:4683..6212- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATTTGACGTCTGTTCTCCTCCATTGTGTGCTTGTGGCTGCGCTGCT
TTCGGCCGTGCGCGCCGCAAAGCCCGTGCCCTCCTTCAAAGACGTCACCG
TCAGCGCCGGCATCGACCTCTCGCGGCCCAAGCTCAAGAAATACGGCGCG
CCGTCCGTGGCCGATCTGGACCGCGACGGATGGCCCGACCTTTTATTCTG
TCACCACGACCAGACGTTCGAGGAGCTGTACTTCAACAATCGCGACGGCA
CCTTCACCAAGGCGCAGTGGGGCATATGGCACGACACACACGGGCTCAAT
GCATGGCCCGTATCGCCCACCACCAAGACCATGCGCTTCTCCATGTCGGT
GGGAGGCAACTTCGGCATGGATCCTAATGCACCGTTCGTGTTCGAGGTGG
ACCCCGCCACGCGCGCCATCACGCGTGTGGACGCGGACGCCGGGCTGGAT
CAGTTTGGCGGACGGGGGCGGTCCGCGATTTATCTGGATTTGTCTCAGGG
TCGTCATCCACAATTTTTGGACATTATTTACACCAACGCGCTCGCTCTCG
ATGGCACGTCGCAGTTTGCGTACGAGGGCATTGACGGCTTTAAATTCAAG
CCGCGTCAACTGAAGGGCGGCTTTGAGGTGTCTGACAACGCGTTGGCGCT
GGTCACGGACGTTGACAACGATGGCGCGGTGGAGATTGTGGCCATGTGGC
GACTGGCCATGTACAAGGTCACCGGCGACTTTGAGCTCACGGACATCACT
GATCAGGTGTTTCCGCCCGATATGCCACGCACTGGCGTCATTGCGGTGGC
CGAAATTGACTTTGACAACGATGGCGACTTTGACCTGTATGTGGCGCGCC
ACCGCGTGGGTCCGTGGTTGCCGGATGTGGCGTACCATGATGTGTTGCTG
GAAAACCGCAACGGCAAGTACGTGGACGTGAGCGCGCGCGCGGGCGTTCC
CAGAAACACGCAGTCACATGGCGTGACGGTGGGCGACTTTAACAACGATG
GCTGGATGGACATCTACGTGAGCCAGTTCACCGAGCCCGACTTCATGCTG
ATCAACATCGGCGGCGGAGTGTTCCGACGCCTGAACGGACTCACGCCGGA
CCGACCGCCCAACGTGCGCGGCGACAACGCCGTGGCAGTTGACTACGACC
TGGACGGTCGCGTGGACTTGGTGGCCAGCCAGGGCGATCACAACGACATC
GCGCTGGGCGGCTCGTACCGCATCTTCAAGAACATGCTGGACACATCGGA
GGGCAACGCAAACTACATCCACGTGCGCGTGGGCGTGCCGTGGGATCGCA
GCTGCACGCCCATGCACGCCACGGTGCTGGTGAACGCCGGCAACCTGTGG
CAAAAACGACGCGTGGGCTCGCCGGGCACGGAGGTGTCCAACTCGTACAT
GGAGACGCTGCACTTCGGGCTGGGGTCGCGCACGGAGGTGACGGCCATCT
ACGTGGTGTACGCGAACGGATACGTGGTGATGAAGCGCGGCGTGAAGCAC
GGGCAGACGGTGCTGCTCGGGCTGTTGTAA

protein sequence of Gcaud9166.t1

>Gcaud9166.t1 ID=Gcaud9166.t1|Name=Gcaud9166.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=510bp
MNLTSVLLHCVLVAALLSAVRAAKPVPSFKDVTVSAGIDLSRPKLKKYGA
PSVADLDRDGWPDLLFCHHDQTFEELYFNNRDGTFTKAQWGIWHDTHGLN
AWPVSPTTKTMRFSMSVGGNFGMDPNAPFVFEVDPATRAITRVDADAGLD
QFGGRGRSAIYLDLSQGRHPQFLDIIYTNALALDGTSQFAYEGIDGFKFK
PRQLKGGFEVSDNALALVTDVDNDGAVEIVAMWRLAMYKVTGDFELTDIT
DQVFPPDMPRTGVIAVAEIDFDNDGDFDLYVARHRVGPWLPDVAYHDVLL
ENRNGKYVDVSARAGVPRNTQSHGVTVGDFNNDGWMDIYVSQFTEPDFML
INIGGGVFRRLNGLTPDRPPNVRGDNAVAVDYDLDGRVDLVASQGDHNDI
ALGGSYRIFKNMLDTSEGNANYIHVRVGVPWDRSCTPMHATVLVNAGNLW
QKRRVGSPGTEVSNSYMETLHFGLGSRTEVTAIYVVYANGYVVMKRGVKH
GQTVLLGLL*

mRNA from alignment at NODE_1421_length_10791_cov_3.905047:4683..6212-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9166.t1 ID=Gcaud9166.t1|Name=Gcaud9166.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1530bp|location=Sequence derived from alignment at NODE_1421_length_10791_cov_3.905047:4683..6212- (Gracilaria caudata M_176_S67 male)
ATGAATTTGACGTCTGTTCTCCTCCATTGTGTGCTTGTGGCTGCGCTGCT
TTCGGCCGTGCGCGCCGCAAAGCCCGTGCCCTCCTTCAAAGACGTCACCG
TCAGCGCCGGCATCGACCTCTCGCGGCCCAAGCTCAAGAAATACGGCGCG
CCGTCCGTGGCCGATCTGGACCGCGACGGATGGCCCGACCTTTTATTCTG
TCACCACGACCAGACGTTCGAGGAGCTGTACTTCAACAATCGCGACGGCA
CCTTCACCAAGGCGCAGTGGGGCATATGGCACGACACACACGGGCTCAAT
GCATGGCCCGTATCGCCCACCACCAAGACCATGCGCTTCTCCATGTCGGT
GGGAGGCAACTTCGGCATGGATCCTAATGCACCGTTCGTGTTCGAGGTGG
ACCCCGCCACGCGCGCCATCACGCGTGTGGACGCGGACGCCGGGCTGGAT
CAGTTTGGCGGACGGGGGCGGTCCGCGATTTATCTGGATTTGTCTCAGGG
TCGTCATCCACAATTTTTGGACATTATTTACACCAACGCGCTCGCTCTCG
ATGGCACGTCGCAGTTTGCGTACGAGGGCATTGACGGCTTTAAATTCAAG
CCGCGTCAACTGAAGGGCGGCTTTGAGGTGTCTGACAACGCGTTGGCGCT
GGTCACGGACGTTGACAACGATGGCGCGGTGGAGATTGTGGCCATGTGGC
GACTGGCCATGTACAAGGTCACCGGCGACTTTGAGCTCACGGACATCACT
GATCAGGTGTTTCCGCCCGATATGCCACGCACTGGCGTCATTGCGGTGGC
CGAAATTGACTTTGACAACGATGGCGACTTTGACCTGTATGTGGCGCGCC
ACCGCGTGGGTCCGTGGTTGCCGGATGTGGCGTACCATGATGTGTTGCTG
GAAAACCGCAACGGCAAGTACGTGGACGTGAGCGCGCGCGCGGGCGTTCC
CAGAAACACGCAGTCACATGGCGTGACGGTGGGCGACTTTAACAACGATG
GCTGGATGGACATCTACGTGAGCCAGTTCACCGAGCCCGACTTCATGCTG
ATCAACATCGGCGGCGGAGTGTTCCGACGCCTGAACGGACTCACGCCGGA
CCGACCGCCCAACGTGCGCGGCGACAACGCCGTGGCAGTTGACTACGACC
TGGACGGTCGCGTGGACTTGGTGGCCAGCCAGGGCGATCACAACGACATC
GCGCTGGGCGGCTCGTACCGCATCTTCAAGAACATGCTGGACACATCGGA
GGGCAACGCAAACTACATCCACGTGCGCGTGGGCGTGCCGTGGGATCGCA
GCTGCACGCCCATGCACGCCACGGTGCTGGTGAACGCCGGCAACCTGTGG
CAAAAACGACGCGTGGGCTCGCCGGGCACGGAGGTGTCCAACTCGTACAT
GGAGACGCTGCACTTCGGGCTGGGGTCGCGCACGGAGGTGACGGCCATCT
ACGTGGTGTACGCGAACGGATACGTGGTGATGAAGCGCGGCGTGAAGCAC
GGGCAGACGGTGCTGCTCGGGCTGTTGTAA

Coding sequence (CDS) from alignment at NODE_1421_length_10791_cov_3.905047:4683..6212-

>Gcaud9166.t1 ID=Gcaud9166.t1|Name=Gcaud9166.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1530bp|location=Sequence derived from alignment at NODE_1421_length_10791_cov_3.905047:4683..6212- (Gracilaria caudata M_176_S67 male)
ATGAATTTGACGTCTGTTCTCCTCCATTGTGTGCTTGTGGCTGCGCTGCT
TTCGGCCGTGCGCGCCGCAAAGCCCGTGCCCTCCTTCAAAGACGTCACCG
TCAGCGCCGGCATCGACCTCTCGCGGCCCAAGCTCAAGAAATACGGCGCG
CCGTCCGTGGCCGATCTGGACCGCGACGGATGGCCCGACCTTTTATTCTG
TCACCACGACCAGACGTTCGAGGAGCTGTACTTCAACAATCGCGACGGCA
CCTTCACCAAGGCGCAGTGGGGCATATGGCACGACACACACGGGCTCAAT
GCATGGCCCGTATCGCCCACCACCAAGACCATGCGCTTCTCCATGTCGGT
GGGAGGCAACTTCGGCATGGATCCTAATGCACCGTTCGTGTTCGAGGTGG
ACCCCGCCACGCGCGCCATCACGCGTGTGGACGCGGACGCCGGGCTGGAT
CAGTTTGGCGGACGGGGGCGGTCCGCGATTTATCTGGATTTGTCTCAGGG
TCGTCATCCACAATTTTTGGACATTATTTACACCAACGCGCTCGCTCTCG
ATGGCACGTCGCAGTTTGCGTACGAGGGCATTGACGGCTTTAAATTCAAG
CCGCGTCAACTGAAGGGCGGCTTTGAGGTGTCTGACAACGCGTTGGCGCT
GGTCACGGACGTTGACAACGATGGCGCGGTGGAGATTGTGGCCATGTGGC
GACTGGCCATGTACAAGGTCACCGGCGACTTTGAGCTCACGGACATCACT
GATCAGGTGTTTCCGCCCGATATGCCACGCACTGGCGTCATTGCGGTGGC
CGAAATTGACTTTGACAACGATGGCGACTTTGACCTGTATGTGGCGCGCC
ACCGCGTGGGTCCGTGGTTGCCGGATGTGGCGTACCATGATGTGTTGCTG
GAAAACCGCAACGGCAAGTACGTGGACGTGAGCGCGCGCGCGGGCGTTCC
CAGAAACACGCAGTCACATGGCGTGACGGTGGGCGACTTTAACAACGATG
GCTGGATGGACATCTACGTGAGCCAGTTCACCGAGCCCGACTTCATGCTG
ATCAACATCGGCGGCGGAGTGTTCCGACGCCTGAACGGACTCACGCCGGA
CCGACCGCCCAACGTGCGCGGCGACAACGCCGTGGCAGTTGACTACGACC
TGGACGGTCGCGTGGACTTGGTGGCCAGCCAGGGCGATCACAACGACATC
GCGCTGGGCGGCTCGTACCGCATCTTCAAGAACATGCTGGACACATCGGA
GGGCAACGCAAACTACATCCACGTGCGCGTGGGCGTGCCGTGGGATCGCA
GCTGCACGCCCATGCACGCCACGGTGCTGGTGAACGCCGGCAACCTGTGG
CAAAAACGACGCGTGGGCTCGCCGGGCACGGAGGTGTCCAACTCGTACAT
GGAGACGCTGCACTTCGGGCTGGGGTCGCGCACGGAGGTGACGGCCATCT
ACGTGGTGTACGCGAACGGATACGTGGTGATGAAGCGCGGCGTGAAGCAC
GGGCAGACGGTGCTGCTCGGGCTGTTGTAA