Gcaud9163.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9163.t1
Unique Name	Gcaud9163.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	361

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1047_length_14702_cov_4.831086	contig	NODE_1047_length_14702_cov_4.831086:10310..11392 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	242159.ABO95885
PFAMs	TPR_16
Max annot lvl	3041\|Chlorophyta
Evalue	2.44e-15
EggNOG OGs	2CV6Q@1\|root,2RREP@2759\|Eukaryota,380E2@33090\|Viridiplantae,34MI7@3041\|Chlorophyta

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9163	Gcaud9163	Gracilaria caudata M_176_S67 male	gene	NODE_1047_length_14702_cov_4.831086 10310..11392 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9163.t1.start1	Gcaud9163.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1047_length_14702_cov_4.831086 10310..10312 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9163.t1.CDS1	Gcaud9163.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1047_length_14702_cov_4.831086 10310..11392 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9163.t1.exon1	Gcaud9163.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1047_length_14702_cov_4.831086 10310..11392 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9163.t1.stop1	Gcaud9163.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1047_length_14702_cov_4.831086 11390..11392 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9163.t1	Gcaud9163.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1047_length_14702_cov_4.831086 10310..11392 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1047_length_14702_cov_4.831086:10310..11392+
coding sequence from alignment at NODE_1047_length_14702_cov_4.831086:10310..11392+

mRNA sequence

>Gcaud9163.t1 ID=Gcaud9163.t1|Name=Gcaud9163.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=361bp
MSPVPRKARHSRRSRAKSARRVKQNTLQLSNPISVDALVRDAKTCEANGQ
LQDAISKLERAVTLKPDDAGFYEELATLYMQETRSEDAVRALRMAITLKP
NDGFEKYNYLAQLLGDTEEAVLSARKGIELIKMELTSIDKSQEARTQELR
EFQASAHCSVAEIFLGVIEESNDPALAQKLDVEVEKEIMEALAISVEGGV
SEQESLIALANLRLSQGRAVDAREAMVRVLACMSHGLQLLEQDEISDAVL
VAAMEKLPPMEIRIAIGKQLMEVGLWAEAEAVLSSVMYECDFNVEVWYLL
AVTHWKRRQPSEARECLAQTRSILERSDGYEGELEEEMIDKLYEELEKIS
GDPNKGVPQQ*

spliced messenger RNA

>Gcaud9163.t1 ID=Gcaud9163.t1|Name=Gcaud9163.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1083bp|location=Sequence derived from alignment at NODE_1047_length_14702_cov_4.831086:10310..11392+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCCCGGTACCAAGGAAAGCGCGTCATTCAAGGCGTTCCAGAGCAAA
ATCTGCTAGAAGAGTGAAGCAGAACACATTACAATTGTCCAATCCGATAT
CTGTCGATGCGCTCGTGAGGGATGCGAAAACCTGCGAAGCAAACGGGCAG
CTGCAGGACGCAATCTCAAAATTGGAACGAGCAGTGACCTTGAAGCCAGA
TGATGCAGGGTTTTACGAGGAGTTGGCCACCCTCTATATGCAAGAAACAA
GATCAGAAGACGCGGTGCGAGCTTTGCGCATGGCTATAACGCTTAAGCCT
AATGATGGATTCGAGAAATACAATTATCTAGCGCAACTTCTTGGAGACAC
AGAGGAGGCTGTATTGAGCGCTCGTAAAGGTATAGAATTAATAAAGATGG
AGCTCACGAGCATTGACAAATCGCAGGAAGCTCGTACACAAGAATTACGA
GAGTTCCAAGCAAGCGCGCACTGTTCAGTGGCTGAAATATTCCTCGGAGT
CATCGAAGAAAGTAATGACCCTGCTCTGGCTCAGAAACTGGACGTAGAGG
TTGAGAAGGAAATCATGGAAGCTCTTGCTATCAGTGTTGAGGGCGGTGTA
TCCGAACAAGAGTCGTTAATCGCTTTAGCAAACTTGAGATTAAGTCAGGG
TCGAGCTGTTGATGCGAGGGAGGCAATGGTACGCGTTTTGGCATGTATGT
CACATGGACTTCAACTGCTCGAACAGGATGAAATTTCTGACGCAGTATTG
GTCGCGGCTATGGAGAAGCTGCCCCCAATGGAAATTCGAATCGCCATTGG
GAAGCAGCTGATGGAAGTTGGCTTGTGGGCTGAAGCTGAAGCTGTACTTT
CCTCAGTCATGTATGAGTGTGACTTCAACGTTGAAGTTTGGTACCTACTC
GCGGTAACTCATTGGAAACGAAGACAGCCCTCAGAAGCTCGGGAATGCCT
AGCGCAGACGCGTTCAATTTTGGAACGATCAGACGGATACGAAGGCGAAC
TTGAAGAGGAGATGATCGATAAACTATACGAGGAGTTAGAAAAAATTAGT
GGTGATCCCAACAAAGGTGTTCCACAGCAATAG

protein sequence of Gcaud9163.t1

>Gcaud9163.t1 ID=Gcaud9163.t1|Name=Gcaud9163.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=361bp
MSPVPRKARHSRRSRAKSARRVKQNTLQLSNPISVDALVRDAKTCEANGQ
LQDAISKLERAVTLKPDDAGFYEELATLYMQETRSEDAVRALRMAITLKP
NDGFEKYNYLAQLLGDTEEAVLSARKGIELIKMELTSIDKSQEARTQELR
EFQASAHCSVAEIFLGVIEESNDPALAQKLDVEVEKEIMEALAISVEGGV
SEQESLIALANLRLSQGRAVDAREAMVRVLACMSHGLQLLEQDEISDAVL
VAAMEKLPPMEIRIAIGKQLMEVGLWAEAEAVLSSVMYECDFNVEVWYLL
AVTHWKRRQPSEARECLAQTRSILERSDGYEGELEEEMIDKLYEELEKIS
GDPNKGVPQQ*

mRNA from alignment at NODE_1047_length_14702_cov_4.831086:10310..11392+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9163.t1 ID=Gcaud9163.t1|Name=Gcaud9163.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1083bp|location=Sequence derived from alignment at NODE_1047_length_14702_cov_4.831086:10310..11392+ (Gracilaria caudata M_176_S67 male)
ATGTCCCCGGTACCAAGGAAAGCGCGTCATTCAAGGCGTTCCAGAGCAAA
ATCTGCTAGAAGAGTGAAGCAGAACACATTACAATTGTCCAATCCGATAT
CTGTCGATGCGCTCGTGAGGGATGCGAAAACCTGCGAAGCAAACGGGCAG
CTGCAGGACGCAATCTCAAAATTGGAACGAGCAGTGACCTTGAAGCCAGA
TGATGCAGGGTTTTACGAGGAGTTGGCCACCCTCTATATGCAAGAAACAA
GATCAGAAGACGCGGTGCGAGCTTTGCGCATGGCTATAACGCTTAAGCCT
AATGATGGATTCGAGAAATACAATTATCTAGCGCAACTTCTTGGAGACAC
AGAGGAGGCTGTATTGAGCGCTCGTAAAGGTATAGAATTAATAAAGATGG
AGCTCACGAGCATTGACAAATCGCAGGAAGCTCGTACACAAGAATTACGA
GAGTTCCAAGCAAGCGCGCACTGTTCAGTGGCTGAAATATTCCTCGGAGT
CATCGAAGAAAGTAATGACCCTGCTCTGGCTCAGAAACTGGACGTAGAGG
TTGAGAAGGAAATCATGGAAGCTCTTGCTATCAGTGTTGAGGGCGGTGTA
TCCGAACAAGAGTCGTTAATCGCTTTAGCAAACTTGAGATTAAGTCAGGG
TCGAGCTGTTGATGCGAGGGAGGCAATGGTACGCGTTTTGGCATGTATGT
CACATGGACTTCAACTGCTCGAACAGGATGAAATTTCTGACGCAGTATTG
GTCGCGGCTATGGAGAAGCTGCCCCCAATGGAAATTCGAATCGCCATTGG
GAAGCAGCTGATGGAAGTTGGCTTGTGGGCTGAAGCTGAAGCTGTACTTT
CCTCAGTCATGTATGAGTGTGACTTCAACGTTGAAGTTTGGTACCTACTC
GCGGTAACTCATTGGAAACGAAGACAGCCCTCAGAAGCTCGGGAATGCCT
AGCGCAGACGCGTTCAATTTTGGAACGATCAGACGGATACGAAGGCGAAC
TTGAAGAGGAGATGATCGATAAACTATACGAGGAGTTAGAAAAAATTAGT
GGTGATCCCAACAAAGGTGTTCCACAGCAATAG

Coding sequence (CDS) from alignment at NODE_1047_length_14702_cov_4.831086:10310..11392+

>Gcaud9163.t1 ID=Gcaud9163.t1|Name=Gcaud9163.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1083bp|location=Sequence derived from alignment at NODE_1047_length_14702_cov_4.831086:10310..11392+ (Gracilaria caudata M_176_S67 male)
ATGTCCCCGGTACCAAGGAAAGCGCGTCATTCAAGGCGTTCCAGAGCAAA
ATCTGCTAGAAGAGTGAAGCAGAACACATTACAATTGTCCAATCCGATAT
CTGTCGATGCGCTCGTGAGGGATGCGAAAACCTGCGAAGCAAACGGGCAG
CTGCAGGACGCAATCTCAAAATTGGAACGAGCAGTGACCTTGAAGCCAGA
TGATGCAGGGTTTTACGAGGAGTTGGCCACCCTCTATATGCAAGAAACAA
GATCAGAAGACGCGGTGCGAGCTTTGCGCATGGCTATAACGCTTAAGCCT
AATGATGGATTCGAGAAATACAATTATCTAGCGCAACTTCTTGGAGACAC
AGAGGAGGCTGTATTGAGCGCTCGTAAAGGTATAGAATTAATAAAGATGG
AGCTCACGAGCATTGACAAATCGCAGGAAGCTCGTACACAAGAATTACGA
GAGTTCCAAGCAAGCGCGCACTGTTCAGTGGCTGAAATATTCCTCGGAGT
CATCGAAGAAAGTAATGACCCTGCTCTGGCTCAGAAACTGGACGTAGAGG
TTGAGAAGGAAATCATGGAAGCTCTTGCTATCAGTGTTGAGGGCGGTGTA
TCCGAACAAGAGTCGTTAATCGCTTTAGCAAACTTGAGATTAAGTCAGGG
TCGAGCTGTTGATGCGAGGGAGGCAATGGTACGCGTTTTGGCATGTATGT
CACATGGACTTCAACTGCTCGAACAGGATGAAATTTCTGACGCAGTATTG
GTCGCGGCTATGGAGAAGCTGCCCCCAATGGAAATTCGAATCGCCATTGG
GAAGCAGCTGATGGAAGTTGGCTTGTGGGCTGAAGCTGAAGCTGTACTTT
CCTCAGTCATGTATGAGTGTGACTTCAACGTTGAAGTTTGGTACCTACTC
GCGGTAACTCATTGGAAACGAAGACAGCCCTCAGAAGCTCGGGAATGCCT
AGCGCAGACGCGTTCAATTTTGGAACGATCAGACGGATACGAAGGCGAAC
TTGAAGAGGAGATGATCGATAAACTATACGAGGAGTTAGAAAAAATTAGT
GGTGATCCCAACAAAGGTGTTCCACAGCAATAG