Gcaud9161.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9161.t1
Unique Name	Gcaud9161.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	209

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1047_length_14702_cov_4.831086	contig	NODE_1047_length_14702_cov_4.831086:3131..3839 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704949.1
Preferred name	RNF5
PFAMs	zf-C3HC4,zf-C3HC4_2,zf-C3HC4_3
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K05744,ko:K10666
KEGG Pathway	ko04141,ko04360,ko04666,ko04810,map04141,map04360,map04666,map04810
GOs	GO:0000209,GO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0005737,GO:0005739,GO:0005740,GO:0005783,GO:0005789,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006508,GO:0006511,GO:0006515,GO:0006517,GO:0006725,GO:0006807,GO:0006810,GO:0006928,GO:0006950,GO:0008150,GO:0008152,GO:0008270,GO:0008380,GO:0009056,GO:0009057,GO:0009100,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010033,GO:0010243,GO:0010467,GO:0010498,GO:0010506,GO:0010507,GO:0012505,GO:0016020,GO:0016070,GO:0016071,GO:0016074,GO:0016241,GO:0016477,GO:0016567,GO:0016740,GO:0018996,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030054,GO:0030154,GO:0030163,GO:0030433,GO:0031090,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031647,GO:0031648,GO:0031966,GO:0031967,GO:0031975,GO:0031984,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033554,GO:0034247,GO:0034470,GO:0034641,GO:0034660,GO:0034976,GO:0035966,GO:0035967,GO:0036211,GO:0036503,GO:0036507,GO:0036508,GO:0036513,GO:0040011,GO:0040039,GO:0042175,GO:0042221,GO:0042303,GO:0042692,GO:0042802,GO:0043144,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043292,GO:0043412,GO:0043632,GO:0044087,GO:0044088,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044390,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044432,GO:0044444,GO:0044446,GO:0044449,GO:0044464,GO:0045292,GO:0046483,GO:0046872,GO:0046914,GO:0048468,GO:0048519,GO:0048523,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051146,GO:0051179,GO:0051234,GO:0051603,GO:0051674,GO:0051704,GO:0051707,GO:0051716,GO:0051788,GO:0051865,GO:0055001,GO:0055002,GO:0055085,GO:0055120,GO:0061061,GO:0061630,GO:0061659,GO:0065007,GO:0065008,GO:0070534,GO:0070647,GO:0070887,GO:0070936,GO:0071218,GO:0071310,GO:0071704,GO:0071712,GO:0090304,GO:0098796,GO:0098827,GO:0099080,GO:0099081,GO:0099512,GO:0140096,GO:1901135,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1902115,GO:1904380,GO:1990904,GO:2000785
Evalue	6.51e-34
EggNOG OGs	COG5574@1\|root,KOG0823@2759\|Eukaryota
EC	2.3.2.27,2.7.11.1
Description	ER-associated misfolded protein catabolic process
COG category	O
BRITE	ko00000,ko00001,ko01000,ko01001,ko04121

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9161	Gcaud9161	Gracilaria caudata M_176_S67 male	gene	NODE_1047_length_14702_cov_4.831086 3131..3839 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9161.t1	Gcaud9161.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1047_length_14702_cov_4.831086 3131..3839 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9161.t1.stop1	Gcaud9161.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1047_length_14702_cov_4.831086 3131..3133 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9161.t1.CDS1	Gcaud9161.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1047_length_14702_cov_4.831086 3131..3189 -
Gcaud9161.t1.CDS2	Gcaud9161.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1047_length_14702_cov_4.831086 3272..3839 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9161.t1.exon1	Gcaud9161.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1047_length_14702_cov_4.831086 3131..3189 -
Gcaud9161.t1.exon2	Gcaud9161.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1047_length_14702_cov_4.831086 3272..3839 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9161.t1.intron1	Gcaud9161.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1047_length_14702_cov_4.831086 3190..3271 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9161.t1.start1	Gcaud9161.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1047_length_14702_cov_4.831086 3837..3839 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1047_length_14702_cov_4.831086:3131..3839-
coding sequence from alignment at NODE_1047_length_14702_cov_4.831086:3131..3839-

mRNA sequence

>Gcaud9161.t1 ID=Gcaud9161.t1|Name=Gcaud9161.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=209bp
MGEKEPISEHLARAQQRTQAASQDASEKKDENPFECHVCLDAPREPVVTP
CGHLYCWPCLYRWLRMHGENAQCPVCKSAINRSSVIPIYGRGGSTSRAQI
EEGDNPVPPRPSGHREQPARGMQGVPHFGVHHATFGRLNPYGAGYENLGL
SAFGFFPSLFGLQIAYPHMNEPPREEPHHNQQEDGFPDIVAKIFLLLTVF
IAVIITTF*

spliced messenger RNA

>Gcaud9161.t1 ID=Gcaud9161.t1|Name=Gcaud9161.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=627bp|location=Sequence derived from alignment at NODE_1047_length_14702_cov_4.831086:3131..3839- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGAAAAGGAACCCATCTCCGAACATTTGGCAAGAGCACAGCAGCG
GACGCAAGCGGCTTCGCAAGACGCATCCGAGAAGAAGGATGAGAATCCGT
TCGAGTGCCACGTCTGTCTTGACGCACCACGTGAGCCCGTCGTCACCCCA
TGTGGCCATCTCTACTGCTGGCCTTGTCTATATCGCTGGCTAAGAATGCA
CGGCGAAAACGCACAATGTCCTGTTTGCAAGTCAGCGATAAACAGGAGTT
CAGTGATTCCAATATACGGCCGCGGTGGCTCCACATCTCGTGCTCAAATT
GAAGAGGGTGATAACCCCGTTCCTCCCAGACCTTCCGGGCATCGCGAACA
ACCTGCTCGTGGTATGCAAGGAGTACCGCATTTTGGCGTTCATCACGCTA
CCTTCGGCCGTCTCAACCCCTACGGAGCAGGCTATGAGAACTTGGGCTTA
TCTGCATTTGGCTTTTTTCCAAGTCTCTTTGGCCTACAAATTGCTTATCC
CCACATGAATGAGCCTCCGAGGGAGGAGCCTCATCACAATCAACAAGAAG
ATGGTTTTCCGGATATAGTCGCTAAGATATTTTTGCTTCTCACAGTTTTC
ATAGCGGTGATCATCACCACTTTCTAG

protein sequence of Gcaud9161.t1

>Gcaud9161.t1 ID=Gcaud9161.t1|Name=Gcaud9161.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=209bp
MGEKEPISEHLARAQQRTQAASQDASEKKDENPFECHVCLDAPREPVVTP
CGHLYCWPCLYRWLRMHGENAQCPVCKSAINRSSVIPIYGRGGSTSRAQI
EEGDNPVPPRPSGHREQPARGMQGVPHFGVHHATFGRLNPYGAGYENLGL
SAFGFFPSLFGLQIAYPHMNEPPREEPHHNQQEDGFPDIVAKIFLLLTVF
IAVIITTF*

mRNA from alignment at NODE_1047_length_14702_cov_4.831086:3131..3839-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9161.t1 ID=Gcaud9161.t1|Name=Gcaud9161.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=709bp|location=Sequence derived from alignment at NODE_1047_length_14702_cov_4.831086:3131..3839- (Gracilaria caudata M_176_S67 male)
ATGGGGGAAAAGGAACCCATCTCCGAACATTTGGCAAGAGCACAGCAGCG
GACGCAAGCGGCTTCGCAAGACGCATCCGAGAAGAAGGATGAGAATCCGT
TCGAGTGCCACGTCTGTCTTGACGCACCACGTGAGCCCGTCGTCACCCCA
TGTGGCCATCTCTACTGCTGGCCTTGTCTATATCGCTGGCTAAGAATGCA
CGGCGAAAACGCACAATGTCCTGTTTGCAAGTCAGCGATAAACAGGAGTT
CAGTGATTCCAATATACGGCCGCGGTGGCTCCACATCTCGTGCTCAAATT
GAAGAGGGTGATAACCCCGTTCCTCCCAGACCTTCCGGGCATCGCGAACA
ACCTGCTCGTGGTATGCAAGGAGTACCGCATTTTGGCGTTCATCACGCTA
CCTTCGGCCGTCTCAACCCCTACGGAGCAGGCTATGAGAACTTGGGCTTA
TCTGCATTTGGCTTTTTTCCAAGTCTCTTTGGCCTACAAATTGCTTATCC
CCACATGAATGAGCCTCCGAGGGAGGAGCCTCATCACAATCAACAAGAAG
ATGGTTTTCCGGATATAGGTATGTGTGGTCGCTCATCAACCGCAGTCTTG
TACGCTCTCAGCTTCCTAACACAGTCTTCGTCTTGATTCTGCCTGTACAG
TCGCTAAGATATTTTTGCTTCTCACAGTTTTCATAGCGGTGATCATCACC
ACTTTCTAG

Coding sequence (CDS) from alignment at NODE_1047_length_14702_cov_4.831086:3131..3839-

>Gcaud9161.t1 ID=Gcaud9161.t1|Name=Gcaud9161.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=627bp|location=Sequence derived from alignment at NODE_1047_length_14702_cov_4.831086:3131..3839- (Gracilaria caudata M_176_S67 male)
ATGGGGGAAAAGGAACCCATCTCCGAACATTTGGCAAGAGCACAGCAGCG
GACGCAAGCGGCTTCGCAAGACGCATCCGAGAAGAAGGATGAGAATCCGT
TCGAGTGCCACGTCTGTCTTGACGCACCACGTGAGCCCGTCGTCACCCCA
TGTGGCCATCTCTACTGCTGGCCTTGTCTATATCGCTGGCTAAGAATGCA
CGGCGAAAACGCACAATGTCCTGTTTGCAAGTCAGCGATAAACAGGAGTT
CAGTGATTCCAATATACGGCCGCGGTGGCTCCACATCTCGTGCTCAAATT
GAAGAGGGTGATAACCCCGTTCCTCCCAGACCTTCCGGGCATCGCGAACA
ACCTGCTCGTGGTATGCAAGGAGTACCGCATTTTGGCGTTCATCACGCTA
CCTTCGGCCGTCTCAACCCCTACGGAGCAGGCTATGAGAACTTGGGCTTA
TCTGCATTTGGCTTTTTTCCAAGTCTCTTTGGCCTACAAATTGCTTATCC
CCACATGAATGAGCCTCCGAGGGAGGAGCCTCATCACAATCAACAAGAAG
ATGGTTTTCCGGATATAGTCGCTAAGATATTTTTGCTTCTCACAGTTTTC
ATAGCGGTGATCATCACCACTTTCTAG