Gcaud915.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud915.t1
Unique Name	Gcaud915.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	406

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_431_length_25724_cov_4.504896	contig	NODE_431_length_25724_cov_4.504896:18431..19749 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	227086.JGI_V11_86438
Max annot lvl	227086.JGI_V11_86438\|-
Evalue	4.6e-19
EggNOG OGs	28NQ8@1\|root,2QVA3@2759\|Eukaryota
Description	elongation factor-2 kinase activity
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud915	Gcaud915	Gracilaria caudata M_176_S67 male	gene	NODE_431_length_25724_cov_4.504896 18431..19749 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud915.t1	Gcaud915.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_431_length_25724_cov_4.504896 18431..19749 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud915.t1.start1	Gcaud915.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_431_length_25724_cov_4.504896 18431..18433 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud915.t1.CDS1	Gcaud915.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_431_length_25724_cov_4.504896 18431..19471 +
Gcaud915.t1.CDS2	Gcaud915.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_431_length_25724_cov_4.504896 19573..19749 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud915.t1.exon1	Gcaud915.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_431_length_25724_cov_4.504896 18431..19471 +
Gcaud915.t1.exon2	Gcaud915.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_431_length_25724_cov_4.504896 19573..19749 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud915.t1.intron1	Gcaud915.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_431_length_25724_cov_4.504896 19472..19572 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud915.t1.stop1	Gcaud915.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_431_length_25724_cov_4.504896 19747..19749 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_431_length_25724_cov_4.504896:18431..19749+
coding sequence from alignment at NODE_431_length_25724_cov_4.504896:18431..19749+

mRNA sequence

>Gcaud915.t1 ID=Gcaud915.t1|Name=Gcaud915.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=406bp
MDSSGTVRRMSSSDIIPAFEDPPSAHTQKDIISDGYRLITRTLREPLFEL
YCEAEVESTQLFVQFDVFPFSAGGQRLAFQGQMFERLDNGRSKRIMPVVV
KVQMATGDYLSRSLSERTRVCELEADNTVRKHEMTSSLLDKWCTLGTNKQ
VEILPAAKVMVNRGCSVDQIPPERYPVLQHLFKKLSLDAVLYDGAIGTVE
EYLEGRFTKFLNNDGDHNSRVRANFPAAFAHWSWVDSGGSIMVSDIQGVR
SGNGYVLTDPCVHSVGGVAFGATDLGLMGVEEFFVKHRCNGLCHDLKLAK
DGSDLDAGNVMRTRILKVASPKDESEDPSVKTRITHENEDATTKPDRAKN
KKVRATNELQRSASGPAAKRHGGGHAEDEQIAPIRRAARAGDEQTSAPRR
HNTQE*

spliced messenger RNA

>Gcaud915.t1 ID=Gcaud915.t1|Name=Gcaud915.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1218bp|location=Sequence derived from alignment at NODE_431_length_25724_cov_4.504896:18431..19749+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTCATCTGGTACGGTACGAAGGATGTCATCCTCCGATATTATCCC
AGCTTTTGAAGATCCTCCTTCTGCTCACACGCAGAAGGACATTATCAGCG
ATGGGTACCGCTTGATAACGCGAACGTTACGCGAGCCACTCTTCGAACTG
TATTGCGAAGCGGAGGTGGAGTCAACCCAACTTTTTGTTCAGTTCGATGT
GTTTCCTTTCTCAGCTGGAGGGCAACGGTTGGCGTTTCAAGGCCAAATGT
TCGAGCGCCTGGATAATGGGCGTTCGAAACGAATCATGCCAGTGGTGGTT
AAGGTTCAAATGGCCACTGGAGACTACCTGTCACGTTCTCTCAGCGAAAG
AACGCGTGTATGCGAACTTGAAGCTGATAATACAGTTCGGAAACACGAGA
TGACGTCCAGTCTGCTTGACAAATGGTGCACGCTGGGAACTAATAAACAG
GTAGAGATCTTACCAGCTGCAAAAGTGATGGTGAATCGGGGATGTTCTGT
GGACCAGATTCCACCGGAAAGATACCCGGTGCTGCAGCATTTGTTCAAGA
AGCTTTCGTTGGACGCTGTGTTGTACGACGGTGCGATTGGCACTGTTGAG
GAATACTTGGAAGGACGGTTTACAAAGTTTCTCAATAACGACGGTGACCA
TAACTCTCGGGTGCGAGCGAACTTTCCAGCAGCGTTTGCACACTGGTCAT
GGGTTGACTCGGGCGGATCCATTATGGTAAGTGATATTCAGGGAGTGCGT
AGCGGGAACGGATACGTACTTACGGACCCGTGCGTGCATTCGGTGGGTGG
AGTAGCATTTGGAGCAACAGACCTAGGTCTCATGGGGGTAGAGGAATTCT
TCGTGAAGCACAGATGCAACGGGTTGTGCCATGACTTGAAACTGGCAAAG
GACGGTAGCGATTTGGACGCGGGAAACGTGATGCGAACGCGGATACTCAA
GGTGGCCAGCCCGAAGGACGAGAGCGAAGACCCATCAGTCAAGACGCGAA
TTACGCACGAGAACGAAGACGCGACGACGAAACCGGACCGGGCGAAGAAC
AAAAAGGTTCGCGCGACCAACGAGCTTCAAAGATCTGCGAGTGGACCAGC
TGCCAAGCGCCACGGCGGAGGACACGCAGAAGACGAGCAGATCGCACCGA
TTCGGAGGGCTGCTCGCGCTGGTGATGAACAGACCTCGGCGCCACGGCGC
CACAACACGCAGGAATAG

protein sequence of Gcaud915.t1

>Gcaud915.t1 ID=Gcaud915.t1|Name=Gcaud915.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=406bp
MDSSGTVRRMSSSDIIPAFEDPPSAHTQKDIISDGYRLITRTLREPLFEL
YCEAEVESTQLFVQFDVFPFSAGGQRLAFQGQMFERLDNGRSKRIMPVVV
KVQMATGDYLSRSLSERTRVCELEADNTVRKHEMTSSLLDKWCTLGTNKQ
VEILPAAKVMVNRGCSVDQIPPERYPVLQHLFKKLSLDAVLYDGAIGTVE
EYLEGRFTKFLNNDGDHNSRVRANFPAAFAHWSWVDSGGSIMVSDIQGVR
SGNGYVLTDPCVHSVGGVAFGATDLGLMGVEEFFVKHRCNGLCHDLKLAK
DGSDLDAGNVMRTRILKVASPKDESEDPSVKTRITHENEDATTKPDRAKN
KKVRATNELQRSASGPAAKRHGGGHAEDEQIAPIRRAARAGDEQTSAPRR
HNTQE*

mRNA from alignment at NODE_431_length_25724_cov_4.504896:18431..19749+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud915.t1 ID=Gcaud915.t1|Name=Gcaud915.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1319bp|location=Sequence derived from alignment at NODE_431_length_25724_cov_4.504896:18431..19749+ (Gracilaria caudata M_176_S67 male)
ATGGACTCATCTGGTACGGTACGAAGGATGTCATCCTCCGATATTATCCC
AGCTTTTGAAGATCCTCCTTCTGCTCACACGCAGAAGGACATTATCAGCG
ATGGGTACCGCTTGATAACGCGAACGTTACGCGAGCCACTCTTCGAACTG
TATTGCGAAGCGGAGGTGGAGTCAACCCAACTTTTTGTTCAGTTCGATGT
GTTTCCTTTCTCAGCTGGAGGGCAACGGTTGGCGTTTCAAGGCCAAATGT
TCGAGCGCCTGGATAATGGGCGTTCGAAACGAATCATGCCAGTGGTGGTT
AAGGTTCAAATGGCCACTGGAGACTACCTGTCACGTTCTCTCAGCGAAAG
AACGCGTGTATGCGAACTTGAAGCTGATAATACAGTTCGGAAACACGAGA
TGACGTCCAGTCTGCTTGACAAATGGTGCACGCTGGGAACTAATAAACAG
GTAGAGATCTTACCAGCTGCAAAAGTGATGGTGAATCGGGGATGTTCTGT
GGACCAGATTCCACCGGAAAGATACCCGGTGCTGCAGCATTTGTTCAAGA
AGCTTTCGTTGGACGCTGTGTTGTACGACGGTGCGATTGGCACTGTTGAG
GAATACTTGGAAGGACGGTTTACAAAGTTTCTCAATAACGACGGTGACCA
TAACTCTCGGGTGCGAGCGAACTTTCCAGCAGCGTTTGCACACTGGTCAT
GGGTTGACTCGGGCGGATCCATTATGGTAAGTGATATTCAGGGAGTGCGT
AGCGGGAACGGATACGTACTTACGGACCCGTGCGTGCATTCGGTGGGTGG
AGTAGCATTTGGAGCAACAGACCTAGGTCTCATGGGGGTAGAGGAATTCT
TCGTGAAGCACAGATGCAACGGGTTGTGCCATGACTTGAAACTGGCAAAG
GACGGTAGCGATTTGGACGCGGGAAACGTGATGCGAACGCGGATACTCAA
GGTGGCCAGCCCGAAGGACGAGAGCGAAGACCCATCAGTCAAGACGCGAA
TTACGCACGAGAACGAAGACGCGACGACGAAACCGGACCGGGTGAAGGAA
AAAGGTGGTTCGAAGGATGCGAAAGGGGCCAGATTGCGCGCGCGGACGGG
CTCCAGCCGAGTGCGACGGTCGTCGGCACCGTGTGACGACAGGCGAAGAA
CAAAAAGGTTCGCGCGACCAACGAGCTTCAAAGATCTGCGAGTGGACCAG
CTGCCAAGCGCCACGGCGGAGGACACGCAGAAGACGAGCAGATCGCACCG
ATTCGGAGGGCTGCTCGCGCTGGTGATGAACAGACCTCGGCGCCACGGCG
CCACAACACGCAGGAATAG

Coding sequence (CDS) from alignment at NODE_431_length_25724_cov_4.504896:18431..19749+

>Gcaud915.t1 ID=Gcaud915.t1|Name=Gcaud915.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1218bp|location=Sequence derived from alignment at NODE_431_length_25724_cov_4.504896:18431..19749+ (Gracilaria caudata M_176_S67 male)
ATGGACTCATCTGGTACGGTACGAAGGATGTCATCCTCCGATATTATCCC
AGCTTTTGAAGATCCTCCTTCTGCTCACACGCAGAAGGACATTATCAGCG
ATGGGTACCGCTTGATAACGCGAACGTTACGCGAGCCACTCTTCGAACTG
TATTGCGAAGCGGAGGTGGAGTCAACCCAACTTTTTGTTCAGTTCGATGT
GTTTCCTTTCTCAGCTGGAGGGCAACGGTTGGCGTTTCAAGGCCAAATGT
TCGAGCGCCTGGATAATGGGCGTTCGAAACGAATCATGCCAGTGGTGGTT
AAGGTTCAAATGGCCACTGGAGACTACCTGTCACGTTCTCTCAGCGAAAG
AACGCGTGTATGCGAACTTGAAGCTGATAATACAGTTCGGAAACACGAGA
TGACGTCCAGTCTGCTTGACAAATGGTGCACGCTGGGAACTAATAAACAG
GTAGAGATCTTACCAGCTGCAAAAGTGATGGTGAATCGGGGATGTTCTGT
GGACCAGATTCCACCGGAAAGATACCCGGTGCTGCAGCATTTGTTCAAGA
AGCTTTCGTTGGACGCTGTGTTGTACGACGGTGCGATTGGCACTGTTGAG
GAATACTTGGAAGGACGGTTTACAAAGTTTCTCAATAACGACGGTGACCA
TAACTCTCGGGTGCGAGCGAACTTTCCAGCAGCGTTTGCACACTGGTCAT
GGGTTGACTCGGGCGGATCCATTATGGTAAGTGATATTCAGGGAGTGCGT
AGCGGGAACGGATACGTACTTACGGACCCGTGCGTGCATTCGGTGGGTGG
AGTAGCATTTGGAGCAACAGACCTAGGTCTCATGGGGGTAGAGGAATTCT
TCGTGAAGCACAGATGCAACGGGTTGTGCCATGACTTGAAACTGGCAAAG
GACGGTAGCGATTTGGACGCGGGAAACGTGATGCGAACGCGGATACTCAA
GGTGGCCAGCCCGAAGGACGAGAGCGAAGACCCATCAGTCAAGACGCGAA
TTACGCACGAGAACGAAGACGCGACGACGAAACCGGACCGGGCGAAGAAC
AAAAAGGTTCGCGCGACCAACGAGCTTCAAAGATCTGCGAGTGGACCAGC
TGCCAAGCGCCACGGCGGAGGACACGCAGAAGACGAGCAGATCGCACCGA
TTCGGAGGGCTGCTCGCGCTGGTGATGAACAGACCTCGGCGCCACGGCGC
CACAACACGCAGGAATAG