Gcaud9105.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9105.t1
Unique Name	Gcaud9105.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	436

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_156_length_42793_cov_4.230575	contig	NODE_156_length_42793_cov_4.230575:11925..13232 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9105	Gcaud9105	Gracilaria caudata M_176_S67 male	gene	NODE_156_length_42793_cov_4.230575 11925..13232 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9105.t1.start1	Gcaud9105.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_156_length_42793_cov_4.230575 11925..11927 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9105.t1.CDS1	Gcaud9105.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_156_length_42793_cov_4.230575 11925..13232 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9105.t1.exon1	Gcaud9105.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_156_length_42793_cov_4.230575 11925..13232 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9105.t1.stop1	Gcaud9105.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_156_length_42793_cov_4.230575 13230..13232 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9105.t1	Gcaud9105.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_156_length_42793_cov_4.230575 11925..13232 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_156_length_42793_cov_4.230575:11925..13232+
coding sequence from alignment at NODE_156_length_42793_cov_4.230575:11925..13232+

mRNA sequence

>Gcaud9105.t1 ID=Gcaud9105.t1|Name=Gcaud9105.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=436bp
MEGCSSTDECLTGETCASGGTCVSNAFVPGAAPLDEADPALGLNLDPCQS
ISDCQNPRNCVQFAEGEFGQCAGPNCFCVRPDPSCTSVSECSQGESCTQR
EGSNNAICISETAIINGDATEDEIDEIPDSAPAIPPMEDMPSVPTATEDT
EAPTTPPPQTTESPGSPETPATPVPVTPGSPETPATPVPVTPDSPDTPAT
SEEPEAPETPVVLPVPLPEESAPEEEGGPTDVPEADAQPEQADREPAVVV
PGADGATVSPDTDEGEEVVPAGTDPETTELPDGEDGEILPSPAEGELIEP
GVSSTPEVDIEDGGEEDPNPSPEDVICIGEHHLVHLPRDELLYSSNRVAR
VLCDENNSCATPGHIVMFNGKPMMMSSYCSKTTCAPHIMKVNSPRYRRAA
RLGSHTDGLSFTAFAARYGTMAEEHLLRTFVHMGL*

spliced messenger RNA

>Gcaud9105.t1 ID=Gcaud9105.t1|Name=Gcaud9105.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1308bp|location=Sequence derived from alignment at NODE_156_length_42793_cov_4.230575:11925..13232+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGGCTGCTCGTCCACGGACGAATGTCTGACGGGAGAGACATGTGC
TTCAGGCGGCACATGTGTGTCCAACGCATTTGTACCAGGTGCCGCCCCGC
TTGATGAAGCTGATCCTGCTTTGGGACTCAACTTGGATCCTTGTCAATCC
ATCTCAGATTGCCAGAACCCTCGCAACTGTGTCCAGTTTGCTGAAGGTGA
ATTCGGACAATGCGCCGGCCCGAACTGCTTCTGTGTACGACCTGACCCCA
GCTGTACCTCTGTTTCCGAGTGTTCGCAGGGAGAATCTTGCACACAGAGA
GAGGGATCAAATAATGCCATTTGTATTTCTGAAACTGCTATTATTAACGG
GGATGCTACGGAGGACGAGATCGATGAGATTCCGGACAGTGCACCTGCAA
TCCCGCCTATGGAGGACATGCCATCTGTCCCTACTGCCACTGAAGACACG
GAAGCGCCGACCACCCCACCTCCACAAACCACAGAGTCCCCAGGGTCTCC
TGAAACCCCGGCCACTCCAGTTCCAGTGACCCCAGGGTCTCCTGAAACCC
CGGCCACTCCAGTTCCAGTGACCCCAGACTCTCCAGACACCCCGGCCACT
TCAGAAGAACCAGAAGCTCCGGAGACTCCGGTTGTCCTGCCTGTTCCGCT
GCCAGAAGAATCAGCTCCCGAAGAAGAGGGAGGCCCTACCGATGTGCCAG
AAGCGGACGCTCAACCCGAGCAAGCTGACCGAGAGCCTGCCGTCGTTGTG
CCTGGCGCAGACGGGGCAACCGTCTCCCCTGACACTGATGAAGGTGAGGA
AGTTGTGCCAGCAGGTACCGATCCCGAAACAACTGAACTCCCCGATGGGG
AAGATGGTGAGATTCTCCCATCCCCTGCTGAAGGTGAACTAATCGAACCA
GGCGTATCTAGCACACCTGAGGTTGACATCGAGGACGGTGGCGAAGAAGA
TCCCAACCCCTCTCCTGAGGATGTGATTTGTATTGGAGAACATCATCTCG
TTCACTTGCCACGTGATGAGTTGTTGTACTCATCGAACAGAGTCGCCCGA
GTGCTTTGTGATGAGAATAACAGCTGTGCCACGCCGGGACATATCGTCAT
GTTCAACGGCAAGCCAATGATGATGAGCAGTTATTGTTCCAAGACAACTT
GTGCCCCTCACATCATGAAGGTGAACAGTCCTCGTTACCGACGTGCTGCT
CGACTGGGTTCCCACACGGACGGTCTCAGTTTCACTGCCTTTGCGGCTAG
GTATGGAACCATGGCTGAGGAGCATCTGTTGCGCACATTTGTGCATATGG
GATTGTAG

protein sequence of Gcaud9105.t1

>Gcaud9105.t1 ID=Gcaud9105.t1|Name=Gcaud9105.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=436bp
MEGCSSTDECLTGETCASGGTCVSNAFVPGAAPLDEADPALGLNLDPCQS
ISDCQNPRNCVQFAEGEFGQCAGPNCFCVRPDPSCTSVSECSQGESCTQR
EGSNNAICISETAIINGDATEDEIDEIPDSAPAIPPMEDMPSVPTATEDT
EAPTTPPPQTTESPGSPETPATPVPVTPGSPETPATPVPVTPDSPDTPAT
SEEPEAPETPVVLPVPLPEESAPEEEGGPTDVPEADAQPEQADREPAVVV
PGADGATVSPDTDEGEEVVPAGTDPETTELPDGEDGEILPSPAEGELIEP
GVSSTPEVDIEDGGEEDPNPSPEDVICIGEHHLVHLPRDELLYSSNRVAR
VLCDENNSCATPGHIVMFNGKPMMMSSYCSKTTCAPHIMKVNSPRYRRAA
RLGSHTDGLSFTAFAARYGTMAEEHLLRTFVHMGL*

mRNA from alignment at NODE_156_length_42793_cov_4.230575:11925..13232+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9105.t1 ID=Gcaud9105.t1|Name=Gcaud9105.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1308bp|location=Sequence derived from alignment at NODE_156_length_42793_cov_4.230575:11925..13232+ (Gracilaria caudata M_176_S67 male)
ATGGAAGGCTGCTCGTCCACGGACGAATGTCTGACGGGAGAGACATGTGC
TTCAGGCGGCACATGTGTGTCCAACGCATTTGTACCAGGTGCCGCCCCGC
TTGATGAAGCTGATCCTGCTTTGGGACTCAACTTGGATCCTTGTCAATCC
ATCTCAGATTGCCAGAACCCTCGCAACTGTGTCCAGTTTGCTGAAGGTGA
ATTCGGACAATGCGCCGGCCCGAACTGCTTCTGTGTACGACCTGACCCCA
GCTGTACCTCTGTTTCCGAGTGTTCGCAGGGAGAATCTTGCACACAGAGA
GAGGGATCAAATAATGCCATTTGTATTTCTGAAACTGCTATTATTAACGG
GGATGCTACGGAGGACGAGATCGATGAGATTCCGGACAGTGCACCTGCAA
TCCCGCCTATGGAGGACATGCCATCTGTCCCTACTGCCACTGAAGACACG
GAAGCGCCGACCACCCCACCTCCACAAACCACAGAGTCCCCAGGGTCTCC
TGAAACCCCGGCCACTCCAGTTCCAGTGACCCCAGGGTCTCCTGAAACCC
CGGCCACTCCAGTTCCAGTGACCCCAGACTCTCCAGACACCCCGGCCACT
TCAGAAGAACCAGAAGCTCCGGAGACTCCGGTTGTCCTGCCTGTTCCGCT
GCCAGAAGAATCAGCTCCCGAAGAAGAGGGAGGCCCTACCGATGTGCCAG
AAGCGGACGCTCAACCCGAGCAAGCTGACCGAGAGCCTGCCGTCGTTGTG
CCTGGCGCAGACGGGGCAACCGTCTCCCCTGACACTGATGAAGGTGAGGA
AGTTGTGCCAGCAGGTACCGATCCCGAAACAACTGAACTCCCCGATGGGG
AAGATGGTGAGATTCTCCCATCCCCTGCTGAAGGTGAACTAATCGAACCA
GGCGTATCTAGCACACCTGAGGTTGACATCGAGGACGGTGGCGAAGAAGA
TCCCAACCCCTCTCCTGAGGATGTGATTTGTATTGGAGAACATCATCTCG
TTCACTTGCCACGTGATGAGTTGTTGTACTCATCGAACAGAGTCGCCCGA
GTGCTTTGTGATGAGAATAACAGCTGTGCCACGCCGGGACATATCGTCAT
GTTCAACGGCAAGCCAATGATGATGAGCAGTTATTGTTCCAAGACAACTT
GTGCCCCTCACATCATGAAGGTGAACAGTCCTCGTTACCGACGTGCTGCT
CGACTGGGTTCCCACACGGACGGTCTCAGTTTCACTGCCTTTGCGGCTAG
GTATGGAACCATGGCTGAGGAGCATCTGTTGCGCACATTTGTGCATATGG
GATTGTAG

Coding sequence (CDS) from alignment at NODE_156_length_42793_cov_4.230575:11925..13232+

>Gcaud9105.t1 ID=Gcaud9105.t1|Name=Gcaud9105.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1308bp|location=Sequence derived from alignment at NODE_156_length_42793_cov_4.230575:11925..13232+ (Gracilaria caudata M_176_S67 male)
ATGGAAGGCTGCTCGTCCACGGACGAATGTCTGACGGGAGAGACATGTGC
TTCAGGCGGCACATGTGTGTCCAACGCATTTGTACCAGGTGCCGCCCCGC
TTGATGAAGCTGATCCTGCTTTGGGACTCAACTTGGATCCTTGTCAATCC
ATCTCAGATTGCCAGAACCCTCGCAACTGTGTCCAGTTTGCTGAAGGTGA
ATTCGGACAATGCGCCGGCCCGAACTGCTTCTGTGTACGACCTGACCCCA
GCTGTACCTCTGTTTCCGAGTGTTCGCAGGGAGAATCTTGCACACAGAGA
GAGGGATCAAATAATGCCATTTGTATTTCTGAAACTGCTATTATTAACGG
GGATGCTACGGAGGACGAGATCGATGAGATTCCGGACAGTGCACCTGCAA
TCCCGCCTATGGAGGACATGCCATCTGTCCCTACTGCCACTGAAGACACG
GAAGCGCCGACCACCCCACCTCCACAAACCACAGAGTCCCCAGGGTCTCC
TGAAACCCCGGCCACTCCAGTTCCAGTGACCCCAGGGTCTCCTGAAACCC
CGGCCACTCCAGTTCCAGTGACCCCAGACTCTCCAGACACCCCGGCCACT
TCAGAAGAACCAGAAGCTCCGGAGACTCCGGTTGTCCTGCCTGTTCCGCT
GCCAGAAGAATCAGCTCCCGAAGAAGAGGGAGGCCCTACCGATGTGCCAG
AAGCGGACGCTCAACCCGAGCAAGCTGACCGAGAGCCTGCCGTCGTTGTG
CCTGGCGCAGACGGGGCAACCGTCTCCCCTGACACTGATGAAGGTGAGGA
AGTTGTGCCAGCAGGTACCGATCCCGAAACAACTGAACTCCCCGATGGGG
AAGATGGTGAGATTCTCCCATCCCCTGCTGAAGGTGAACTAATCGAACCA
GGCGTATCTAGCACACCTGAGGTTGACATCGAGGACGGTGGCGAAGAAGA
TCCCAACCCCTCTCCTGAGGATGTGATTTGTATTGGAGAACATCATCTCG
TTCACTTGCCACGTGATGAGTTGTTGTACTCATCGAACAGAGTCGCCCGA
GTGCTTTGTGATGAGAATAACAGCTGTGCCACGCCGGGACATATCGTCAT
GTTCAACGGCAAGCCAATGATGATGAGCAGTTATTGTTCCAAGACAACTT
GTGCCCCTCACATCATGAAGGTGAACAGTCCTCGTTACCGACGTGCTGCT
CGACTGGGTTCCCACACGGACGGTCTCAGTTTCACTGCCTTTGCGGCTAG
GTATGGAACCATGGCTGAGGAGCATCTGTTGCGCACATTTGTGCATATGG
GATTGTAG