Gcaud8768.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8768.t1
Unique Name	Gcaud8768.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	341

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_40_length_68803_cov_4.393963	contig	NODE_40_length_68803_cov_4.393963:48679..49701 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	59689.Al_scaffold_0003_2289
PFAMs	TauD
Max annot lvl	35493\|Streptophyta
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
Evalue	2.64e-78
EggNOG OGs	28JFJ@1\|root,2QRUR@2759\|Eukaryota,37IIG@33090\|Viridiplantae,3GFW6@35493\|Streptophyta,3HP3V@3699\|Brassicales
Description	Clavaminate synthase-like protein At3g21360
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8768	Gcaud8768	Gracilaria caudata M_176_S67 male	gene	NODE_40_length_68803_cov_4.393963 48679..49701 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8768.t1.start1	Gcaud8768.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_40_length_68803_cov_4.393963 48679..48681 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8768.t1.CDS1	Gcaud8768.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_40_length_68803_cov_4.393963 48679..49701 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8768.t1.exon1	Gcaud8768.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_40_length_68803_cov_4.393963 48679..49701 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8768.t1.stop1	Gcaud8768.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_40_length_68803_cov_4.393963 49699..49701 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8768.t1	Gcaud8768.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_40_length_68803_cov_4.393963 48679..49701 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_40_length_68803_cov_4.393963:48679..49701+
coding sequence from alignment at NODE_40_length_68803_cov_4.393963:48679..49701+

mRNA sequence

>Gcaud8768.t1 ID=Gcaud8768.t1|Name=Gcaud8768.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=341bp
MKDTTQVFEHGSLPEARVYNGKPFPLLVTPPSSLPELRTSPEAVIDYLKK
NRAHVLDLLQRHAVLHFRDFAAQNSTPETFAKIVEDSLNLPNFPYELGNA
VRTAIVGDRVFTANESPPEKPIPFHHELAQTPKYPAKLLFYCDRPADTGG
ETPVLLSRAVYQDLQKEHPEFLQKLEQHGVKYSRVMTPNDRPHSAIGRGW
RGTFRVKTRLEAENVLSSRGYSFEWLEDGEESPLRETSPTLQAVVETENG
KSFFNQIAAVWGGWRDEFNKPEDCIRAGDGSLLDPNSLDSLVGIMNKHRV
AVPWKRGDFTFIDNIQAQHSRATFTGRRRVLASLAEAQSS*

spliced messenger RNA

>Gcaud8768.t1 ID=Gcaud8768.t1|Name=Gcaud8768.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1023bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:48679..49701+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGATACCACGCAGGTCTTCGAACACGGAAGCCTTCCTGAAGCCAG
AGTCTACAACGGAAAGCCCTTTCCTCTTCTGGTCACCCCGCCCTCTTCCC
TGCCCGAGTTGCGTACATCACCGGAGGCTGTAATAGATTACCTCAAGAAG
AATCGGGCCCATGTTCTGGATTTGCTTCAACGTCATGCAGTTCTTCATTT
CCGTGACTTCGCTGCGCAGAATTCCACTCCAGAGACTTTTGCGAAGATAG
TGGAGGACAGCTTGAACTTACCCAACTTTCCGTATGAGCTTGGGAATGCG
GTTCGCACAGCGATAGTTGGGGACCGAGTATTCACTGCAAATGAATCCCC
GCCAGAGAAACCGATTCCGTTTCATCACGAACTCGCCCAAACTCCAAAGT
ACCCTGCAAAGCTGCTATTCTATTGTGATCGCCCAGCGGACACAGGTGGT
GAAACACCAGTGTTGCTTTCAAGAGCTGTATACCAGGATCTGCAGAAGGA
GCATCCGGAATTTCTCCAGAAGTTGGAACAGCACGGTGTTAAATACTCTC
GTGTAATGACTCCAAACGACAGGCCACATTCCGCAATAGGGCGTGGGTGG
AGGGGTACGTTCCGCGTAAAGACTCGTCTCGAGGCAGAAAATGTACTTTC
GAGCCGAGGGTATAGCTTTGAATGGCTTGAAGATGGGGAGGAAAGCCCTT
TACGAGAAACAAGTCCAACCTTGCAAGCCGTTGTTGAGACTGAGAACGGG
AAAAGTTTCTTCAATCAGATTGCGGCAGTCTGGGGTGGTTGGAGAGATGA
GTTTAACAAACCTGAAGACTGCATTAGAGCTGGAGATGGGTCTTTACTTG
ATCCGAATTCGTTGGATTCATTGGTGGGCATCATGAACAAGCATCGCGTG
GCAGTGCCGTGGAAGAGAGGCGACTTCACTTTCATTGACAACATTCAAGC
CCAACACAGCCGAGCTACTTTCACAGGTAGACGTAGGGTTTTGGCATCTT
TGGCAGAGGCTCAATCTTCGTAG

protein sequence of Gcaud8768.t1

>Gcaud8768.t1 ID=Gcaud8768.t1|Name=Gcaud8768.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=341bp
MKDTTQVFEHGSLPEARVYNGKPFPLLVTPPSSLPELRTSPEAVIDYLKK
NRAHVLDLLQRHAVLHFRDFAAQNSTPETFAKIVEDSLNLPNFPYELGNA
VRTAIVGDRVFTANESPPEKPIPFHHELAQTPKYPAKLLFYCDRPADTGG
ETPVLLSRAVYQDLQKEHPEFLQKLEQHGVKYSRVMTPNDRPHSAIGRGW
RGTFRVKTRLEAENVLSSRGYSFEWLEDGEESPLRETSPTLQAVVETENG
KSFFNQIAAVWGGWRDEFNKPEDCIRAGDGSLLDPNSLDSLVGIMNKHRV
AVPWKRGDFTFIDNIQAQHSRATFTGRRRVLASLAEAQSS*

mRNA from alignment at NODE_40_length_68803_cov_4.393963:48679..49701+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8768.t1 ID=Gcaud8768.t1|Name=Gcaud8768.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1023bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:48679..49701+ (Gracilaria caudata M_176_S67 male)
ATGAAAGATACCACGCAGGTCTTCGAACACGGAAGCCTTCCTGAAGCCAG
AGTCTACAACGGAAAGCCCTTTCCTCTTCTGGTCACCCCGCCCTCTTCCC
TGCCCGAGTTGCGTACATCACCGGAGGCTGTAATAGATTACCTCAAGAAG
AATCGGGCCCATGTTCTGGATTTGCTTCAACGTCATGCAGTTCTTCATTT
CCGTGACTTCGCTGCGCAGAATTCCACTCCAGAGACTTTTGCGAAGATAG
TGGAGGACAGCTTGAACTTACCCAACTTTCCGTATGAGCTTGGGAATGCG
GTTCGCACAGCGATAGTTGGGGACCGAGTATTCACTGCAAATGAATCCCC
GCCAGAGAAACCGATTCCGTTTCATCACGAACTCGCCCAAACTCCAAAGT
ACCCTGCAAAGCTGCTATTCTATTGTGATCGCCCAGCGGACACAGGTGGT
GAAACACCAGTGTTGCTTTCAAGAGCTGTATACCAGGATCTGCAGAAGGA
GCATCCGGAATTTCTCCAGAAGTTGGAACAGCACGGTGTTAAATACTCTC
GTGTAATGACTCCAAACGACAGGCCACATTCCGCAATAGGGCGTGGGTGG
AGGGGTACGTTCCGCGTAAAGACTCGTCTCGAGGCAGAAAATGTACTTTC
GAGCCGAGGGTATAGCTTTGAATGGCTTGAAGATGGGGAGGAAAGCCCTT
TACGAGAAACAAGTCCAACCTTGCAAGCCGTTGTTGAGACTGAGAACGGG
AAAAGTTTCTTCAATCAGATTGCGGCAGTCTGGGGTGGTTGGAGAGATGA
GTTTAACAAACCTGAAGACTGCATTAGAGCTGGAGATGGGTCTTTACTTG
ATCCGAATTCGTTGGATTCATTGGTGGGCATCATGAACAAGCATCGCGTG
GCAGTGCCGTGGAAGAGAGGCGACTTCACTTTCATTGACAACATTCAAGC
CCAACACAGCCGAGCTACTTTCACAGGTAGACGTAGGGTTTTGGCATCTT
TGGCAGAGGCTCAATCTTCGTAG

Coding sequence (CDS) from alignment at NODE_40_length_68803_cov_4.393963:48679..49701+

>Gcaud8768.t1 ID=Gcaud8768.t1|Name=Gcaud8768.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1023bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:48679..49701+ (Gracilaria caudata M_176_S67 male)
ATGAAAGATACCACGCAGGTCTTCGAACACGGAAGCCTTCCTGAAGCCAG
AGTCTACAACGGAAAGCCCTTTCCTCTTCTGGTCACCCCGCCCTCTTCCC
TGCCCGAGTTGCGTACATCACCGGAGGCTGTAATAGATTACCTCAAGAAG
AATCGGGCCCATGTTCTGGATTTGCTTCAACGTCATGCAGTTCTTCATTT
CCGTGACTTCGCTGCGCAGAATTCCACTCCAGAGACTTTTGCGAAGATAG
TGGAGGACAGCTTGAACTTACCCAACTTTCCGTATGAGCTTGGGAATGCG
GTTCGCACAGCGATAGTTGGGGACCGAGTATTCACTGCAAATGAATCCCC
GCCAGAGAAACCGATTCCGTTTCATCACGAACTCGCCCAAACTCCAAAGT
ACCCTGCAAAGCTGCTATTCTATTGTGATCGCCCAGCGGACACAGGTGGT
GAAACACCAGTGTTGCTTTCAAGAGCTGTATACCAGGATCTGCAGAAGGA
GCATCCGGAATTTCTCCAGAAGTTGGAACAGCACGGTGTTAAATACTCTC
GTGTAATGACTCCAAACGACAGGCCACATTCCGCAATAGGGCGTGGGTGG
AGGGGTACGTTCCGCGTAAAGACTCGTCTCGAGGCAGAAAATGTACTTTC
GAGCCGAGGGTATAGCTTTGAATGGCTTGAAGATGGGGAGGAAAGCCCTT
TACGAGAAACAAGTCCAACCTTGCAAGCCGTTGTTGAGACTGAGAACGGG
AAAAGTTTCTTCAATCAGATTGCGGCAGTCTGGGGTGGTTGGAGAGATGA
GTTTAACAAACCTGAAGACTGCATTAGAGCTGGAGATGGGTCTTTACTTG
ATCCGAATTCGTTGGATTCATTGGTGGGCATCATGAACAAGCATCGCGTG
GCAGTGCCGTGGAAGAGAGGCGACTTCACTTTCATTGACAACATTCAAGC
CCAACACAGCCGAGCTACTTTCACAGGTAGACGTAGGGTTTTGGCATCTT
TGGCAGAGGCTCAATCTTCGTAG