Gcaud8764.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8764.t1
Unique NameGcaud8764.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length230
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_40_length_68803_cov_4.393963contigNODE_40_length_68803_cov_4.393963:39468..40157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX43090
PFAMsGST_C_2,GST_N_3
Max annot lvl2759|Eukaryota
KEGG rclassRC00011,RC00092,RC00948
KEGG koko:K21888
KEGG TC1.A.12.2.1
KEGG ReactionR01108,R03522
KEGG Pathwayko00053,ko00480,ko01100,map00053,map00480,map01100
Evalue6.57e-45
EggNOG OGsKOG1422@1|root,KOG1422@2759|Eukaryota
EC1.8.5.1,2.5.1.18
Descriptionchloride channel activity
COG categoryO
BRITEko00000,ko00001,ko01000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8764Gcaud8764Gracilaria caudata M_176_S67 malegeneNODE_40_length_68803_cov_4.393963 39468..40157 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8764.t1.start1Gcaud8764.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_40_length_68803_cov_4.393963 39468..39470 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8764.t1.CDS1Gcaud8764.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_40_length_68803_cov_4.393963 39468..40157 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8764.t1.exon1Gcaud8764.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_40_length_68803_cov_4.393963 39468..40157 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8764.t1.stop1Gcaud8764.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_40_length_68803_cov_4.393963 40155..40157 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8764.t1Gcaud8764.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_40_length_68803_cov_4.393963 39468..40157 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8764.t1 ID=Gcaud8764.t1|Name=Gcaud8764.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=230bp
MTMTKKPVSEKGKLLFAKAGPDGKSLGDCPFTQKANLALRFNGMEFDVCC
VDVSNKPEWFLELTEAGTTPAFQCGDDVLEDSEQIVRLSDELGTSDSKLI
RPQEPLWNECEQAVNKIFKPFVAFIKNKDDANEEAVKQDLSDAISELDAV
LSKTKGKYLLGDTVSSLDCNLAPKLQHIMVAGKHYKGYDVASVSPRVSEY
MDHMRATEEWKPTACADETIVWGWSKFFK*
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spliced messenger RNA

>Gcaud8764.t1 ID=Gcaud8764.t1|Name=Gcaud8764.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=690bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:39468..40157+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTATGACAAAGAAGCCCGTGTCCGAGAAGGGCAAATTGCTGTTCGC
AAAAGCAGGGCCCGATGGAAAGTCGCTTGGAGACTGTCCATTCACGCAGA
AGGCTAATCTTGCTTTGCGTTTCAACGGGATGGAGTTCGATGTGTGTTGT
GTGGATGTTAGCAACAAACCGGAATGGTTTCTGGAGCTTACCGAGGCCGG
CACCACGCCAGCCTTTCAATGCGGGGACGATGTGCTTGAAGATTCTGAAC
AAATTGTAAGACTTTCGGATGAGCTGGGAACAAGCGACTCAAAACTGATC
CGTCCACAGGAGCCCCTATGGAACGAATGCGAACAGGCAGTGAACAAGAT
CTTTAAACCGTTCGTGGCGTTCATCAAGAATAAAGATGACGCCAACGAAG
AAGCTGTCAAACAAGACTTGTCCGACGCAATATCTGAATTGGATGCAGTG
CTGAGCAAGACGAAGGGCAAATACTTGTTGGGCGATACTGTTAGTTCGCT
GGACTGCAACTTGGCACCCAAGCTGCAACATATCATGGTGGCAGGAAAGC
ACTACAAAGGATACGACGTGGCCTCCGTTTCACCGCGTGTGAGCGAGTAT
ATGGATCACATGCGAGCGACGGAGGAGTGGAAACCCACAGCGTGTGCAGA
CGAAACCATCGTGTGGGGCTGGAGCAAATTCTTCAAGTAG
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protein sequence of Gcaud8764.t1

>Gcaud8764.t1 ID=Gcaud8764.t1|Name=Gcaud8764.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=230bp
MTMTKKPVSEKGKLLFAKAGPDGKSLGDCPFTQKANLALRFNGMEFDVCC
VDVSNKPEWFLELTEAGTTPAFQCGDDVLEDSEQIVRLSDELGTSDSKLI
RPQEPLWNECEQAVNKIFKPFVAFIKNKDDANEEAVKQDLSDAISELDAV
LSKTKGKYLLGDTVSSLDCNLAPKLQHIMVAGKHYKGYDVASVSPRVSEY
MDHMRATEEWKPTACADETIVWGWSKFFK*
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mRNA from alignment at NODE_40_length_68803_cov_4.393963:39468..40157+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8764.t1 ID=Gcaud8764.t1|Name=Gcaud8764.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=690bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:39468..40157+ (Gracilaria caudata M_176_S67 male)
ATGACTATGACAAAGAAGCCCGTGTCCGAGAAGGGCAAATTGCTGTTCGC
AAAAGCAGGGCCCGATGGAAAGTCGCTTGGAGACTGTCCATTCACGCAGA
AGGCTAATCTTGCTTTGCGTTTCAACGGGATGGAGTTCGATGTGTGTTGT
GTGGATGTTAGCAACAAACCGGAATGGTTTCTGGAGCTTACCGAGGCCGG
CACCACGCCAGCCTTTCAATGCGGGGACGATGTGCTTGAAGATTCTGAAC
AAATTGTAAGACTTTCGGATGAGCTGGGAACAAGCGACTCAAAACTGATC
CGTCCACAGGAGCCCCTATGGAACGAATGCGAACAGGCAGTGAACAAGAT
CTTTAAACCGTTCGTGGCGTTCATCAAGAATAAAGATGACGCCAACGAAG
AAGCTGTCAAACAAGACTTGTCCGACGCAATATCTGAATTGGATGCAGTG
CTGAGCAAGACGAAGGGCAAATACTTGTTGGGCGATACTGTTAGTTCGCT
GGACTGCAACTTGGCACCCAAGCTGCAACATATCATGGTGGCAGGAAAGC
ACTACAAAGGATACGACGTGGCCTCCGTTTCACCGCGTGTGAGCGAGTAT
ATGGATCACATGCGAGCGACGGAGGAGTGGAAACCCACAGCGTGTGCAGA
CGAAACCATCGTGTGGGGCTGGAGCAAATTCTTCAAGTAG
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Coding sequence (CDS) from alignment at NODE_40_length_68803_cov_4.393963:39468..40157+

>Gcaud8764.t1 ID=Gcaud8764.t1|Name=Gcaud8764.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=690bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:39468..40157+ (Gracilaria caudata M_176_S67 male)
ATGACTATGACAAAGAAGCCCGTGTCCGAGAAGGGCAAATTGCTGTTCGC
AAAAGCAGGGCCCGATGGAAAGTCGCTTGGAGACTGTCCATTCACGCAGA
AGGCTAATCTTGCTTTGCGTTTCAACGGGATGGAGTTCGATGTGTGTTGT
GTGGATGTTAGCAACAAACCGGAATGGTTTCTGGAGCTTACCGAGGCCGG
CACCACGCCAGCCTTTCAATGCGGGGACGATGTGCTTGAAGATTCTGAAC
AAATTGTAAGACTTTCGGATGAGCTGGGAACAAGCGACTCAAAACTGATC
CGTCCACAGGAGCCCCTATGGAACGAATGCGAACAGGCAGTGAACAAGAT
CTTTAAACCGTTCGTGGCGTTCATCAAGAATAAAGATGACGCCAACGAAG
AAGCTGTCAAACAAGACTTGTCCGACGCAATATCTGAATTGGATGCAGTG
CTGAGCAAGACGAAGGGCAAATACTTGTTGGGCGATACTGTTAGTTCGCT
GGACTGCAACTTGGCACCCAAGCTGCAACATATCATGGTGGCAGGAAAGC
ACTACAAAGGATACGACGTGGCCTCCGTTTCACCGCGTGTGAGCGAGTAT
ATGGATCACATGCGAGCGACGGAGGAGTGGAAACCCACAGCGTGTGCAGA
CGAAACCATCGTGTGGGGCTGGAGCAAATTCTTCAAGTAG
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