Gcaud8763.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8763.t1
Unique NameGcaud8763.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length214
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_40_length_68803_cov_4.393963contigNODE_40_length_68803_cov_4.393963:37543..38184 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8763Gcaud8763Gracilaria caudata M_176_S67 malegeneNODE_40_length_68803_cov_4.393963 37543..38184 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8763.t1.stop1Gcaud8763.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_40_length_68803_cov_4.393963 37543..37545 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8763.t1.CDS1Gcaud8763.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_40_length_68803_cov_4.393963 37543..38184 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8763.t1.exon1Gcaud8763.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_40_length_68803_cov_4.393963 37543..38184 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8763.t1.start1Gcaud8763.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_40_length_68803_cov_4.393963 38182..38184 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8763.t1Gcaud8763.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_40_length_68803_cov_4.393963 37543..38184 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8763.t1 ID=Gcaud8763.t1|Name=Gcaud8763.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=214bp
MTRLSSFITLAAHGDTRNRSVLFIHPHCLPSTESSSFEREIREQLCIVPP
TGPLTLVYCHGAIAEENSSSLYTVRSFRAAYEKVVPNSIRSRIEQIIALH
VSFLTRSHIYMSSFQLQNGEYSKLQYCDLISDLEKVLGVDATLLPLQTVD
FDYDEIMRCWVGRQSELPNGRQPVHPSPDPSKSLIDLSAISLSSIDESLH
EPTPSHSGNSLEP*
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spliced messenger RNA

>Gcaud8763.t1 ID=Gcaud8763.t1|Name=Gcaud8763.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=642bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:37543..38184- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACACGTCTATCCTCTTTCATAACTCTTGCTGCGCATGGCGACACCCG
CAATCGCTCTGTACTCTTCATCCACCCCCACTGTCTTCCTTCAACGGAGT
CATCAAGCTTCGAACGTGAGATAAGAGAACAACTATGTATCGTACCGCCC
ACTGGACCGTTAACTCTCGTGTACTGCCATGGCGCAATTGCCGAGGAAAA
CTCTTCGTCTCTTTACACCGTTCGTTCCTTTCGAGCCGCATATGAAAAAG
TTGTGCCCAACAGCATTCGCTCCCGCATTGAACAAATAATTGCTTTGCAT
GTCTCCTTCTTAACCCGCTCTCATATCTACATGTCTTCGTTTCAGCTGCA
GAATGGGGAATACTCAAAGCTGCAATACTGCGACCTCATCTCGGACCTGG
AGAAGGTCTTGGGCGTTGATGCCACTCTGCTTCCGCTTCAAACTGTTGAC
TTCGATTACGATGAAATCATGAGATGCTGGGTGGGACGTCAAAGTGAGCT
ACCGAACGGTCGGCAGCCAGTGCATCCATCTCCAGATCCATCCAAATCCC
TGATTGATCTCAGCGCCATATCACTCTCTTCTATAGATGAATCGTTGCAT
GAGCCCACGCCCAGTCACTCGGGGAATTCTCTTGAACCTTAA
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protein sequence of Gcaud8763.t1

>Gcaud8763.t1 ID=Gcaud8763.t1|Name=Gcaud8763.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=214bp
MTRLSSFITLAAHGDTRNRSVLFIHPHCLPSTESSSFEREIREQLCIVPP
TGPLTLVYCHGAIAEENSSSLYTVRSFRAAYEKVVPNSIRSRIEQIIALH
VSFLTRSHIYMSSFQLQNGEYSKLQYCDLISDLEKVLGVDATLLPLQTVD
FDYDEIMRCWVGRQSELPNGRQPVHPSPDPSKSLIDLSAISLSSIDESLH
EPTPSHSGNSLEP*
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mRNA from alignment at NODE_40_length_68803_cov_4.393963:37543..38184-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8763.t1 ID=Gcaud8763.t1|Name=Gcaud8763.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=642bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:37543..38184- (Gracilaria caudata M_176_S67 male)
ATGACACGTCTATCCTCTTTCATAACTCTTGCTGCGCATGGCGACACCCG
CAATCGCTCTGTACTCTTCATCCACCCCCACTGTCTTCCTTCAACGGAGT
CATCAAGCTTCGAACGTGAGATAAGAGAACAACTATGTATCGTACCGCCC
ACTGGACCGTTAACTCTCGTGTACTGCCATGGCGCAATTGCCGAGGAAAA
CTCTTCGTCTCTTTACACCGTTCGTTCCTTTCGAGCCGCATATGAAAAAG
TTGTGCCCAACAGCATTCGCTCCCGCATTGAACAAATAATTGCTTTGCAT
GTCTCCTTCTTAACCCGCTCTCATATCTACATGTCTTCGTTTCAGCTGCA
GAATGGGGAATACTCAAAGCTGCAATACTGCGACCTCATCTCGGACCTGG
AGAAGGTCTTGGGCGTTGATGCCACTCTGCTTCCGCTTCAAACTGTTGAC
TTCGATTACGATGAAATCATGAGATGCTGGGTGGGACGTCAAAGTGAGCT
ACCGAACGGTCGGCAGCCAGTGCATCCATCTCCAGATCCATCCAAATCCC
TGATTGATCTCAGCGCCATATCACTCTCTTCTATAGATGAATCGTTGCAT
GAGCCCACGCCCAGTCACTCGGGGAATTCTCTTGAACCTTAA
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Coding sequence (CDS) from alignment at NODE_40_length_68803_cov_4.393963:37543..38184-

>Gcaud8763.t1 ID=Gcaud8763.t1|Name=Gcaud8763.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=642bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:37543..38184- (Gracilaria caudata M_176_S67 male)
ATGACACGTCTATCCTCTTTCATAACTCTTGCTGCGCATGGCGACACCCG
CAATCGCTCTGTACTCTTCATCCACCCCCACTGTCTTCCTTCAACGGAGT
CATCAAGCTTCGAACGTGAGATAAGAGAACAACTATGTATCGTACCGCCC
ACTGGACCGTTAACTCTCGTGTACTGCCATGGCGCAATTGCCGAGGAAAA
CTCTTCGTCTCTTTACACCGTTCGTTCCTTTCGAGCCGCATATGAAAAAG
TTGTGCCCAACAGCATTCGCTCCCGCATTGAACAAATAATTGCTTTGCAT
GTCTCCTTCTTAACCCGCTCTCATATCTACATGTCTTCGTTTCAGCTGCA
GAATGGGGAATACTCAAAGCTGCAATACTGCGACCTCATCTCGGACCTGG
AGAAGGTCTTGGGCGTTGATGCCACTCTGCTTCCGCTTCAAACTGTTGAC
TTCGATTACGATGAAATCATGAGATGCTGGGTGGGACGTCAAAGTGAGCT
ACCGAACGGTCGGCAGCCAGTGCATCCATCTCCAGATCCATCCAAATCCC
TGATTGATCTCAGCGCCATATCACTCTCTTCTATAGATGAATCGTTGCAT
GAGCCCACGCCCAGTCACTCGGGGAATTCTCTTGAACCTTAA
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