Gcaud8762.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8762.t1
Unique Name	Gcaud8762.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	624

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_40_length_68803_cov_4.393963	contig	NODE_40_length_68803_cov_4.393963:35467..37521 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1415756.JQMY01000001_gene503
Preferred name	gidA
PFAMs	GIDA,GIDA_assoc
Max annot lvl	28211\|Alphaproteobacteria
KEGG rclass	RC00053,RC00209,RC00870
KEGG ko	ko:K03495
KEGG Reaction	R08701
GOs	GO:0000166,GO:0001510,GO:0002097,GO:0002098,GO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036094,GO:0043167,GO:0043168,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0048037,GO:0050660,GO:0050662,GO:0071704,GO:0090304,GO:0097159,GO:1901265,GO:1901360,GO:1901363
Evalue	1.64e-155
EggNOG OGs	COG0445@1\|root,COG0445@2\|Bacteria,1MU6F@1224\|Proteobacteria,2TRJS@28211\|Alphaproteobacteria,2PDU2@252301\|Oceanicola
Description	NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34
COG category	D
BRITE	ko00000,ko03016,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8762	Gcaud8762	Gracilaria caudata M_176_S67 male	gene	NODE_40_length_68803_cov_4.393963 35467..37521 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8762.t1	Gcaud8762.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_40_length_68803_cov_4.393963 35467..37521 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8762.t1.start1	Gcaud8762.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_40_length_68803_cov_4.393963 35467..35469 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8762.t1.CDS1	Gcaud8762.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_40_length_68803_cov_4.393963 35467..36271 +
Gcaud8762.t1.CDS2	Gcaud8762.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_40_length_68803_cov_4.393963 36455..37521 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8762.t1.exon1	Gcaud8762.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_40_length_68803_cov_4.393963 35467..36271 +
Gcaud8762.t1.exon2	Gcaud8762.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_40_length_68803_cov_4.393963 36455..37521 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8762.t1.intron1	Gcaud8762.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_40_length_68803_cov_4.393963 36272..36454 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8762.t1.stop1	Gcaud8762.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_40_length_68803_cov_4.393963 37519..37521 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_40_length_68803_cov_4.393963:35467..37521+
coding sequence from alignment at NODE_40_length_68803_cov_4.393963:35467..37521+

mRNA sequence

>Gcaud8762.t1 ID=Gcaud8762.t1|Name=Gcaud8762.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=624bp
MDLTSFRNIFRSKAVLRSYDVVVVGGGHAGCEAASAAARMGADVALLTHR
LDTIGAMSCNPSVGGIGKGHLVREIDALDGIMPKAADSASIQFRTLNSSR
GMAVRGPRAQCDRTLYKEAVRKALSSTAHGTLNVIEGSAESFILKDQRVL
GVQTGDSCEQDGMQLRAGAVILTTGTFLNGKMFVGESSTAGGRRGDLPSI
GVAHALKSSGLRLGRMKTGTPPRILRDTIDFQGLEEEQSDEKPLFFSFMA
DSRDLDSNQLVSCFKSRTSGISMSLPADVQQKVVNSIPGLEHAQIHIPGY
AVEYDYVDPRELAHNLECRRLPGLFLAGQINGTTGYEEAAAQGIIAGINA
TLSVNDGDHTSATTEEPSRSVCDSLRDGYLRLGRSDAYIGVLLDDLTRLG
TSEPYRMLTSRAEFRTSLRPDNADVRLTPIGNAVGCVSQERWAHYERKRR
IVQRASEALRSIRLTPSEWKTRTFNSLFPGGIVDGKHRLSAWQALSRTGV
TIERICEEFQDDCESLREVVRHVEIMRHIEAESKYEGHIRRHQADIERLR
RDEGLRVDKDFDYDSIRGLSMEDREKLSNERPSTLWEAGQISGVTPAGLS
LLRCHLRRRSRWQRDVGNNEAVV*

spliced messenger RNA

>Gcaud8762.t1 ID=Gcaud8762.t1|Name=Gcaud8762.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1872bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:35467..37521+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCTGACATCTTTCCGCAACATTTTCAGATCTAAAGCTGTTCTGCG
CAGTTATGATGTGGTTGTAGTTGGCGGTGGGCATGCTGGGTGTGAGGCTG
CATCAGCGGCAGCTCGGATGGGAGCTGATGTTGCTCTTTTAACTCATCGT
CTGGATACAATAGGAGCCATGAGTTGTAACCCGAGTGTTGGAGGAATCGG
CAAGGGTCACCTCGTACGCGAGATAGATGCCTTAGATGGAATTATGCCTA
AGGCCGCAGACAGCGCATCGATTCAGTTTCGGACCTTGAATTCCTCACGT
GGAATGGCTGTGCGAGGACCTCGGGCACAGTGTGATAGAACCCTTTACAA
AGAGGCAGTACGCAAAGCATTGTCGTCAACTGCTCATGGGACTCTTAATG
TTATAGAAGGCAGTGCGGAAAGTTTCATTCTGAAAGATCAGCGTGTTTTG
GGAGTCCAAACAGGGGATAGTTGCGAACAAGATGGAATGCAACTCCGTGC
TGGCGCTGTTATTCTCACGACGGGGACGTTTTTGAACGGAAAGATGTTTG
TCGGAGAGTCATCTACAGCAGGAGGCCGAAGAGGAGATCTCCCATCGATT
GGAGTTGCTCATGCGCTAAAATCGTCCGGTTTGAGGCTTGGGAGAATGAA
GACTGGGACGCCACCTCGGATCTTAAGAGATACAATAGATTTCCAAGGGT
TAGAAGAGGAACAGTCAGACGAGAAACCTCTCTTCTTTTCATTCATGGCG
GATTCCAGGGATCTTGATTCCAACCAACTTGTCAGTTGCTTCAAGTCAAG
AACATCGGGTATATCGATGTCATTACCTGCGGATGTACAGCAGAAAGTGG
TTAACTCAATTCCGGGACTAGAGCATGCACAAATCCACATACCTGGCTAT
GCTGTGGAGTATGACTATGTTGATCCGCGAGAGCTTGCGCATAATCTGGA
ATGCAGACGGTTGCCTGGCTTGTTTTTGGCGGGACAAATAAACGGCACTA
CTGGTTACGAAGAGGCCGCAGCGCAAGGCATTATAGCAGGTATCAACGCG
ACGCTGAGCGTAAATGATGGTGATCATACAAGTGCTACGACTGAGGAACC
CTCGCGTTCAGTGTGCGATTCTCTTCGAGATGGTTACTTGCGTTTAGGAC
GTTCTGACGCGTATATAGGGGTTCTTCTCGACGACTTGACTCGACTTGGT
ACATCTGAACCGTACAGGATGCTCACATCGCGTGCAGAGTTCCGAACGAG
TTTGAGGCCAGATAATGCCGATGTGCGTTTAACGCCGATTGGAAATGCGG
TGGGTTGTGTTTCGCAAGAACGATGGGCCCACTATGAACGGAAGCGGCGC
ATAGTGCAACGAGCAAGTGAAGCACTGCGGTCTATAAGGTTGACGCCCAG
TGAATGGAAAACGAGAACATTTAATAGCTTATTTCCAGGTGGTATTGTCG
ATGGGAAGCATAGATTAAGCGCTTGGCAAGCATTGTCACGTACTGGCGTC
ACCATCGAACGTATTTGTGAAGAATTCCAAGACGATTGCGAGTCTCTGCG
GGAGGTGGTCCGTCATGTCGAAATTATGCGGCATATAGAAGCAGAGAGCA
AATACGAAGGCCACATCCGACGACATCAAGCTGATATTGAGCGATTACGT
CGAGATGAGGGCCTACGTGTTGACAAAGATTTTGATTACGACTCCATTCG
TGGGCTTTCTATGGAAGACAGGGAAAAGTTGAGTAATGAGAGGCCCAGCA
CTTTGTGGGAGGCAGGACAAATTTCTGGAGTAACGCCAGCAGGGCTGAGT
CTCCTTCGCTGTCACCTTCGGAGAAGATCTCGGTGGCAGCGTGATGTGGG
TAACAACGAAGCTGTGGTGTGA

protein sequence of Gcaud8762.t1

>Gcaud8762.t1 ID=Gcaud8762.t1|Name=Gcaud8762.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=624bp
MDLTSFRNIFRSKAVLRSYDVVVVGGGHAGCEAASAAARMGADVALLTHR
LDTIGAMSCNPSVGGIGKGHLVREIDALDGIMPKAADSASIQFRTLNSSR
GMAVRGPRAQCDRTLYKEAVRKALSSTAHGTLNVIEGSAESFILKDQRVL
GVQTGDSCEQDGMQLRAGAVILTTGTFLNGKMFVGESSTAGGRRGDLPSI
GVAHALKSSGLRLGRMKTGTPPRILRDTIDFQGLEEEQSDEKPLFFSFMA
DSRDLDSNQLVSCFKSRTSGISMSLPADVQQKVVNSIPGLEHAQIHIPGY
AVEYDYVDPRELAHNLECRRLPGLFLAGQINGTTGYEEAAAQGIIAGINA
TLSVNDGDHTSATTEEPSRSVCDSLRDGYLRLGRSDAYIGVLLDDLTRLG
TSEPYRMLTSRAEFRTSLRPDNADVRLTPIGNAVGCVSQERWAHYERKRR
IVQRASEALRSIRLTPSEWKTRTFNSLFPGGIVDGKHRLSAWQALSRTGV
TIERICEEFQDDCESLREVVRHVEIMRHIEAESKYEGHIRRHQADIERLR
RDEGLRVDKDFDYDSIRGLSMEDREKLSNERPSTLWEAGQISGVTPAGLS
LLRCHLRRRSRWQRDVGNNEAVV*

mRNA from alignment at NODE_40_length_68803_cov_4.393963:35467..37521+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8762.t1 ID=Gcaud8762.t1|Name=Gcaud8762.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2055bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:35467..37521+ (Gracilaria caudata M_176_S67 male)
ATGGATCTGACATCTTTCCGCAACATTTTCAGATCTAAAGCTGTTCTGCG
CAGTTATGATGTGGTTGTAGTTGGCGGTGGGCATGCTGGGTGTGAGGCTG
CATCAGCGGCAGCTCGGATGGGAGCTGATGTTGCTCTTTTAACTCATCGT
CTGGATACAATAGGAGCCATGAGTTGTAACCCGAGTGTTGGAGGAATCGG
CAAGGGTCACCTCGTACGCGAGATAGATGCCTTAGATGGAATTATGCCTA
AGGCCGCAGACAGCGCATCGATTCAGTTTCGGACCTTGAATTCCTCACGT
GGAATGGCTGTGCGAGGACCTCGGGCACAGTGTGATAGAACCCTTTACAA
AGAGGCAGTACGCAAAGCATTGTCGTCAACTGCTCATGGGACTCTTAATG
TTATAGAAGGCAGTGCGGAAAGTTTCATTCTGAAAGATCAGCGTGTTTTG
GGAGTCCAAACAGGGGATAGTTGCGAACAAGATGGAATGCAACTCCGTGC
TGGCGCTGTTATTCTCACGACGGGGACGTTTTTGAACGGAAAGATGTTTG
TCGGAGAGTCATCTACAGCAGGAGGCCGAAGAGGAGATCTCCCATCGATT
GGAGTTGCTCATGCGCTAAAATCGTCCGGTTTGAGGCTTGGGAGAATGAA
GACTGGGACGCCACCTCGGATCTTAAGAGATACAATAGATTTCCAAGGGT
TAGAAGAGGAACAGTCAGACGAGAAACCTCTCTTCTTTTCATTCATGGCG
GATTCCAGGGATCTTGATTCCAACCAACTTGTCAGTTGCTTCAAGTCAAG
AACATGTAAGTTAACCCACGAAATTGTCAGAGCGGCCATGAGTGCAGGCC
TAACTCCGAAATACGATTCAAACAATGGACCTCGGTACTGCCCAAGCTTG
GAAGCCAAGATCGAGAGATTCGGCGACCGAGATGGACACACTGTATGGCT
GGAACCAGAAGGTCTGAACTCAAATCTCGTTTACCCAGCGGGTATATCGA
TGTCATTACCTGCGGATGTACAGCAGAAAGTGGTTAACTCAATTCCGGGA
CTAGAGCATGCACAAATCCACATACCTGGCTATGCTGTGGAGTATGACTA
TGTTGATCCGCGAGAGCTTGCGCATAATCTGGAATGCAGACGGTTGCCTG
GCTTGTTTTTGGCGGGACAAATAAACGGCACTACTGGTTACGAAGAGGCC
GCAGCGCAAGGCATTATAGCAGGTATCAACGCGACGCTGAGCGTAAATGA
TGGTGATCATACAAGTGCTACGACTGAGGAACCCTCGCGTTCAGTGTGCG
ATTCTCTTCGAGATGGTTACTTGCGTTTAGGACGTTCTGACGCGTATATA
GGGGTTCTTCTCGACGACTTGACTCGACTTGGTACATCTGAACCGTACAG
GATGCTCACATCGCGTGCAGAGTTCCGAACGAGTTTGAGGCCAGATAATG
CCGATGTGCGTTTAACGCCGATTGGAAATGCGGTGGGTTGTGTTTCGCAA
GAACGATGGGCCCACTATGAACGGAAGCGGCGCATAGTGCAACGAGCAAG
TGAAGCACTGCGGTCTATAAGGTTGACGCCCAGTGAATGGAAAACGAGAA
CATTTAATAGCTTATTTCCAGGTGGTATTGTCGATGGGAAGCATAGATTA
AGCGCTTGGCAAGCATTGTCACGTACTGGCGTCACCATCGAACGTATTTG
TGAAGAATTCCAAGACGATTGCGAGTCTCTGCGGGAGGTGGTCCGTCATG
TCGAAATTATGCGGCATATAGAAGCAGAGAGCAAATACGAAGGCCACATC
CGACGACATCAAGCTGATATTGAGCGATTACGTCGAGATGAGGGCCTACG
TGTTGACAAAGATTTTGATTACGACTCCATTCGTGGGCTTTCTATGGAAG
ACAGGGAAAAGTTGAGTAATGAGAGGCCCAGCACTTTGTGGGAGGCAGGA
CAAATTTCTGGAGTAACGCCAGCAGGGCTGAGTCTCCTTCGCTGTCACCT
TCGGAGAAGATCTCGGTGGCAGCGTGATGTGGGTAACAACGAAGCTGTGG
TGTGA

Coding sequence (CDS) from alignment at NODE_40_length_68803_cov_4.393963:35467..37521+

>Gcaud8762.t1 ID=Gcaud8762.t1|Name=Gcaud8762.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1872bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:35467..37521+ (Gracilaria caudata M_176_S67 male)
ATGGATCTGACATCTTTCCGCAACATTTTCAGATCTAAAGCTGTTCTGCG
CAGTTATGATGTGGTTGTAGTTGGCGGTGGGCATGCTGGGTGTGAGGCTG
CATCAGCGGCAGCTCGGATGGGAGCTGATGTTGCTCTTTTAACTCATCGT
CTGGATACAATAGGAGCCATGAGTTGTAACCCGAGTGTTGGAGGAATCGG
CAAGGGTCACCTCGTACGCGAGATAGATGCCTTAGATGGAATTATGCCTA
AGGCCGCAGACAGCGCATCGATTCAGTTTCGGACCTTGAATTCCTCACGT
GGAATGGCTGTGCGAGGACCTCGGGCACAGTGTGATAGAACCCTTTACAA
AGAGGCAGTACGCAAAGCATTGTCGTCAACTGCTCATGGGACTCTTAATG
TTATAGAAGGCAGTGCGGAAAGTTTCATTCTGAAAGATCAGCGTGTTTTG
GGAGTCCAAACAGGGGATAGTTGCGAACAAGATGGAATGCAACTCCGTGC
TGGCGCTGTTATTCTCACGACGGGGACGTTTTTGAACGGAAAGATGTTTG
TCGGAGAGTCATCTACAGCAGGAGGCCGAAGAGGAGATCTCCCATCGATT
GGAGTTGCTCATGCGCTAAAATCGTCCGGTTTGAGGCTTGGGAGAATGAA
GACTGGGACGCCACCTCGGATCTTAAGAGATACAATAGATTTCCAAGGGT
TAGAAGAGGAACAGTCAGACGAGAAACCTCTCTTCTTTTCATTCATGGCG
GATTCCAGGGATCTTGATTCCAACCAACTTGTCAGTTGCTTCAAGTCAAG
AACATCGGGTATATCGATGTCATTACCTGCGGATGTACAGCAGAAAGTGG
TTAACTCAATTCCGGGACTAGAGCATGCACAAATCCACATACCTGGCTAT
GCTGTGGAGTATGACTATGTTGATCCGCGAGAGCTTGCGCATAATCTGGA
ATGCAGACGGTTGCCTGGCTTGTTTTTGGCGGGACAAATAAACGGCACTA
CTGGTTACGAAGAGGCCGCAGCGCAAGGCATTATAGCAGGTATCAACGCG
ACGCTGAGCGTAAATGATGGTGATCATACAAGTGCTACGACTGAGGAACC
CTCGCGTTCAGTGTGCGATTCTCTTCGAGATGGTTACTTGCGTTTAGGAC
GTTCTGACGCGTATATAGGGGTTCTTCTCGACGACTTGACTCGACTTGGT
ACATCTGAACCGTACAGGATGCTCACATCGCGTGCAGAGTTCCGAACGAG
TTTGAGGCCAGATAATGCCGATGTGCGTTTAACGCCGATTGGAAATGCGG
TGGGTTGTGTTTCGCAAGAACGATGGGCCCACTATGAACGGAAGCGGCGC
ATAGTGCAACGAGCAAGTGAAGCACTGCGGTCTATAAGGTTGACGCCCAG
TGAATGGAAAACGAGAACATTTAATAGCTTATTTCCAGGTGGTATTGTCG
ATGGGAAGCATAGATTAAGCGCTTGGCAAGCATTGTCACGTACTGGCGTC
ACCATCGAACGTATTTGTGAAGAATTCCAAGACGATTGCGAGTCTCTGCG
GGAGGTGGTCCGTCATGTCGAAATTATGCGGCATATAGAAGCAGAGAGCA
AATACGAAGGCCACATCCGACGACATCAAGCTGATATTGAGCGATTACGT
CGAGATGAGGGCCTACGTGTTGACAAAGATTTTGATTACGACTCCATTCG
TGGGCTTTCTATGGAAGACAGGGAAAAGTTGAGTAATGAGAGGCCCAGCA
CTTTGTGGGAGGCAGGACAAATTTCTGGAGTAACGCCAGCAGGGCTGAGT
CTCCTTCGCTGTCACCTTCGGAGAAGATCTCGGTGGCAGCGTGATGTGGG
TAACAACGAAGCTGTGGTGTGA