Gcaud8761.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8761.t1
Unique Name	Gcaud8761.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	637

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_40_length_68803_cov_4.393963	contig	NODE_40_length_68803_cov_4.393963:32510..34420 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1238450.VIBNISOn1_340067
PFAMs	Trypsin
Max annot lvl	1236\|Gammaproteobacteria
Evalue	8.79e-26
EggNOG OGs	COG5640@1\|root,COG5640@2\|Bacteria,1RIHF@1224\|Proteobacteria,1SZAY@1236\|Gammaproteobacteria,1Y2WI@135623\|Vibrionales
Description	Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8761	Gcaud8761	Gracilaria caudata M_176_S67 male	gene	NODE_40_length_68803_cov_4.393963 32510..34420 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8761.t1.stop1	Gcaud8761.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_40_length_68803_cov_4.393963 32510..32512 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8761.t1.CDS1	Gcaud8761.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_40_length_68803_cov_4.393963 32510..34420 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8761.t1.exon1	Gcaud8761.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_40_length_68803_cov_4.393963 32510..34420 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8761.t1.start1	Gcaud8761.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_40_length_68803_cov_4.393963 34418..34420 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8761.t1	Gcaud8761.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_40_length_68803_cov_4.393963 32510..34420 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_40_length_68803_cov_4.393963:32510..34420-
coding sequence from alignment at NODE_40_length_68803_cov_4.393963:32510..34420-

mRNA sequence

>Gcaud8761.t1 ID=Gcaud8761.t1|Name=Gcaud8761.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=637bp
MVNSAQVPNTHPPYRVGTEQRIMFDVVPSCVKEGVNIMKPVHVRNCPCFV
SFGLSTKKSTQVEVDFLVLAEEKFNAWRSSRYSGAPEYLPEFSAVRKRAN
EYNMVYDNFFFQTPNIELRRNETFVLAIRTTSDNDDCDLEIMHIFQSMPR
ACPARLRSGKKRKGNHTNRNQHLSRIIIPYDEQNEVLRKSYHPDGAHRSR
GTELQKRTAALRNQSAEEDARLLQIARTVVKNKVDMHEAGLQTNQERRTY
SKTDKYTSTNNVVAGIEVDDLTIRLYMVSIRSSSGACSGTVIGSRWILTA
AHCQVREGGEALVGGNTNLNGASYRVNRFIPHPEYRLSQQGQVEANDIAV
IETAPMKHGSAVLLNMNGKGPESGRFVRASGYGQIAEEWTSGTERMLLQV
DIPVVSFKRCIQAFVSYGAPEFARALQSRSHMCAGYADDDCAGDTCYGDS
GGPIVARAGGNYVQVGVVSGGIGCARKGLPGFYTRVGRYWDWIRNVTNGD
VGGYSVPGDDGADEVNVSSMVDEEESGEGVAALRTLGIIAGAVGLGVLVL
VLAVLLIKRIGRLVVERTPKGNSSEARGKSASLDKLLQFERGTGNGVDLA
AGMKDGSEIGTDADSETDRDNSEYQGPTYSRTRTGE*

spliced messenger RNA

>Gcaud8761.t1 ID=Gcaud8761.t1|Name=Gcaud8761.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1911bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:32510..34420- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTAACAGCGCCCAAGTTCCTAACACGCACCCACCCTATCGCGTTGG
GACAGAACAAAGAATAATGTTCGATGTCGTTCCGTCATGCGTAAAAGAGG
GGGTCAACATTATGAAGCCCGTGCACGTGCGAAACTGTCCCTGTTTTGTG
AGTTTTGGGCTGTCAACGAAAAAGTCTACCCAGGTGGAAGTTGACTTTCT
TGTGTTGGCAGAAGAAAAATTCAATGCATGGCGTTCGTCGAGATACAGCG
GAGCGCCAGAGTATCTACCTGAGTTTTCAGCAGTAAGAAAGCGGGCAAAC
GAGTACAACATGGTGTATGATAATTTCTTCTTTCAAACCCCTAACATCGA
GCTGCGCAGAAATGAAACGTTTGTGCTGGCAATACGAACTACATCAGACA
ATGACGATTGTGATCTTGAGATTATGCACATATTCCAAAGTATGCCACGA
GCATGTCCAGCGCGTTTGCGCTCGGGAAAGAAGAGAAAAGGAAACCACAC
CAATCGGAATCAACATTTGTCGCGAATCATAATTCCCTACGATGAACAGA
ATGAGGTGCTCCGGAAAAGTTATCATCCTGATGGAGCCCATCGTTCGCGA
GGTACTGAGCTTCAAAAACGAACCGCTGCGTTGCGAAATCAATCAGCTGA
AGAGGATGCGCGCCTACTACAGATTGCAAGAACTGTTGTGAAGAATAAAG
TGGACATGCATGAAGCTGGACTGCAGACCAACCAAGAGAGACGAACATAC
AGCAAAACAGACAAGTACACATCGACAAACAATGTGGTAGCTGGAATCGA
GGTAGATGATTTGACGATCCGACTCTATATGGTGTCAATTCGATCCTCAT
CTGGGGCGTGCTCTGGTACAGTAATTGGGTCAAGGTGGATCCTAACGGCA
GCTCACTGCCAAGTACGTGAAGGGGGCGAAGCACTTGTCGGAGGAAACAC
AAATTTAAACGGTGCAAGCTACAGGGTAAATCGATTCATACCGCATCCTG
AGTACAGACTTTCGCAACAAGGGCAAGTAGAAGCAAATGATATCGCGGTG
ATAGAAACAGCTCCTATGAAACACGGAAGCGCGGTGCTGCTAAACATGAA
CGGAAAAGGGCCGGAGTCAGGAAGGTTTGTAAGGGCTAGTGGATATGGGC
AGATAGCAGAAGAATGGACCTCTGGTACGGAACGCATGTTACTTCAAGTT
GATATTCCAGTTGTTTCGTTCAAGAGATGCATTCAAGCCTTTGTCTCATA
TGGAGCACCGGAGTTTGCCCGTGCTCTACAAAGTAGAAGTCATATGTGTG
CGGGATATGCAGACGACGATTGCGCAGGGGACACATGCTACGGTGATTCA
GGTGGACCAATCGTGGCGCGGGCTGGCGGAAACTATGTGCAAGTCGGTGT
GGTGAGCGGCGGTATTGGATGTGCTAGGAAGGGACTGCCTGGATTCTACA
CTCGAGTGGGTCGATACTGGGATTGGATTCGAAACGTGACAAACGGAGAC
GTTGGTGGTTACAGTGTTCCTGGCGATGATGGAGCGGATGAAGTAAACGT
ATCCTCAATGGTAGATGAGGAAGAATCAGGGGAGGGGGTTGCTGCCCTGA
GAACGCTTGGCATCATCGCGGGCGCAGTTGGACTTGGTGTGCTTGTGTTA
GTATTGGCGGTTTTGCTGATAAAACGGATAGGAAGATTGGTCGTTGAACG
AACACCAAAGGGAAATTCAAGCGAGGCACGAGGGAAAAGTGCAAGCCTGG
ATAAATTGCTGCAATTTGAAAGAGGGACTGGGAATGGTGTGGATCTCGCT
GCAGGAATGAAAGATGGTAGCGAGATCGGTACCGATGCGGATAGTGAAAC
TGACCGAGACAATTCGGAATACCAAGGGCCAACGTACTCAAGAACAAGAA
CTGGCGAGTAA

protein sequence of Gcaud8761.t1

>Gcaud8761.t1 ID=Gcaud8761.t1|Name=Gcaud8761.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=637bp
MVNSAQVPNTHPPYRVGTEQRIMFDVVPSCVKEGVNIMKPVHVRNCPCFV
SFGLSTKKSTQVEVDFLVLAEEKFNAWRSSRYSGAPEYLPEFSAVRKRAN
EYNMVYDNFFFQTPNIELRRNETFVLAIRTTSDNDDCDLEIMHIFQSMPR
ACPARLRSGKKRKGNHTNRNQHLSRIIIPYDEQNEVLRKSYHPDGAHRSR
GTELQKRTAALRNQSAEEDARLLQIARTVVKNKVDMHEAGLQTNQERRTY
SKTDKYTSTNNVVAGIEVDDLTIRLYMVSIRSSSGACSGTVIGSRWILTA
AHCQVREGGEALVGGNTNLNGASYRVNRFIPHPEYRLSQQGQVEANDIAV
IETAPMKHGSAVLLNMNGKGPESGRFVRASGYGQIAEEWTSGTERMLLQV
DIPVVSFKRCIQAFVSYGAPEFARALQSRSHMCAGYADDDCAGDTCYGDS
GGPIVARAGGNYVQVGVVSGGIGCARKGLPGFYTRVGRYWDWIRNVTNGD
VGGYSVPGDDGADEVNVSSMVDEEESGEGVAALRTLGIIAGAVGLGVLVL
VLAVLLIKRIGRLVVERTPKGNSSEARGKSASLDKLLQFERGTGNGVDLA
AGMKDGSEIGTDADSETDRDNSEYQGPTYSRTRTGE*

mRNA from alignment at NODE_40_length_68803_cov_4.393963:32510..34420-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8761.t1 ID=Gcaud8761.t1|Name=Gcaud8761.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1911bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:32510..34420- (Gracilaria caudata M_176_S67 male)
ATGGTTAACAGCGCCCAAGTTCCTAACACGCACCCACCCTATCGCGTTGG
GACAGAACAAAGAATAATGTTCGATGTCGTTCCGTCATGCGTAAAAGAGG
GGGTCAACATTATGAAGCCCGTGCACGTGCGAAACTGTCCCTGTTTTGTG
AGTTTTGGGCTGTCAACGAAAAAGTCTACCCAGGTGGAAGTTGACTTTCT
TGTGTTGGCAGAAGAAAAATTCAATGCATGGCGTTCGTCGAGATACAGCG
GAGCGCCAGAGTATCTACCTGAGTTTTCAGCAGTAAGAAAGCGGGCAAAC
GAGTACAACATGGTGTATGATAATTTCTTCTTTCAAACCCCTAACATCGA
GCTGCGCAGAAATGAAACGTTTGTGCTGGCAATACGAACTACATCAGACA
ATGACGATTGTGATCTTGAGATTATGCACATATTCCAAAGTATGCCACGA
GCATGTCCAGCGCGTTTGCGCTCGGGAAAGAAGAGAAAAGGAAACCACAC
CAATCGGAATCAACATTTGTCGCGAATCATAATTCCCTACGATGAACAGA
ATGAGGTGCTCCGGAAAAGTTATCATCCTGATGGAGCCCATCGTTCGCGA
GGTACTGAGCTTCAAAAACGAACCGCTGCGTTGCGAAATCAATCAGCTGA
AGAGGATGCGCGCCTACTACAGATTGCAAGAACTGTTGTGAAGAATAAAG
TGGACATGCATGAAGCTGGACTGCAGACCAACCAAGAGAGACGAACATAC
AGCAAAACAGACAAGTACACATCGACAAACAATGTGGTAGCTGGAATCGA
GGTAGATGATTTGACGATCCGACTCTATATGGTGTCAATTCGATCCTCAT
CTGGGGCGTGCTCTGGTACAGTAATTGGGTCAAGGTGGATCCTAACGGCA
GCTCACTGCCAAGTACGTGAAGGGGGCGAAGCACTTGTCGGAGGAAACAC
AAATTTAAACGGTGCAAGCTACAGGGTAAATCGATTCATACCGCATCCTG
AGTACAGACTTTCGCAACAAGGGCAAGTAGAAGCAAATGATATCGCGGTG
ATAGAAACAGCTCCTATGAAACACGGAAGCGCGGTGCTGCTAAACATGAA
CGGAAAAGGGCCGGAGTCAGGAAGGTTTGTAAGGGCTAGTGGATATGGGC
AGATAGCAGAAGAATGGACCTCTGGTACGGAACGCATGTTACTTCAAGTT
GATATTCCAGTTGTTTCGTTCAAGAGATGCATTCAAGCCTTTGTCTCATA
TGGAGCACCGGAGTTTGCCCGTGCTCTACAAAGTAGAAGTCATATGTGTG
CGGGATATGCAGACGACGATTGCGCAGGGGACACATGCTACGGTGATTCA
GGTGGACCAATCGTGGCGCGGGCTGGCGGAAACTATGTGCAAGTCGGTGT
GGTGAGCGGCGGTATTGGATGTGCTAGGAAGGGACTGCCTGGATTCTACA
CTCGAGTGGGTCGATACTGGGATTGGATTCGAAACGTGACAAACGGAGAC
GTTGGTGGTTACAGTGTTCCTGGCGATGATGGAGCGGATGAAGTAAACGT
ATCCTCAATGGTAGATGAGGAAGAATCAGGGGAGGGGGTTGCTGCCCTGA
GAACGCTTGGCATCATCGCGGGCGCAGTTGGACTTGGTGTGCTTGTGTTA
GTATTGGCGGTTTTGCTGATAAAACGGATAGGAAGATTGGTCGTTGAACG
AACACCAAAGGGAAATTCAAGCGAGGCACGAGGGAAAAGTGCAAGCCTGG
ATAAATTGCTGCAATTTGAAAGAGGGACTGGGAATGGTGTGGATCTCGCT
GCAGGAATGAAAGATGGTAGCGAGATCGGTACCGATGCGGATAGTGAAAC
TGACCGAGACAATTCGGAATACCAAGGGCCAACGTACTCAAGAACAAGAA
CTGGCGAGTAA

Coding sequence (CDS) from alignment at NODE_40_length_68803_cov_4.393963:32510..34420-

>Gcaud8761.t1 ID=Gcaud8761.t1|Name=Gcaud8761.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1911bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:32510..34420- (Gracilaria caudata M_176_S67 male)
ATGGTTAACAGCGCCCAAGTTCCTAACACGCACCCACCCTATCGCGTTGG
GACAGAACAAAGAATAATGTTCGATGTCGTTCCGTCATGCGTAAAAGAGG
GGGTCAACATTATGAAGCCCGTGCACGTGCGAAACTGTCCCTGTTTTGTG
AGTTTTGGGCTGTCAACGAAAAAGTCTACCCAGGTGGAAGTTGACTTTCT
TGTGTTGGCAGAAGAAAAATTCAATGCATGGCGTTCGTCGAGATACAGCG
GAGCGCCAGAGTATCTACCTGAGTTTTCAGCAGTAAGAAAGCGGGCAAAC
GAGTACAACATGGTGTATGATAATTTCTTCTTTCAAACCCCTAACATCGA
GCTGCGCAGAAATGAAACGTTTGTGCTGGCAATACGAACTACATCAGACA
ATGACGATTGTGATCTTGAGATTATGCACATATTCCAAAGTATGCCACGA
GCATGTCCAGCGCGTTTGCGCTCGGGAAAGAAGAGAAAAGGAAACCACAC
CAATCGGAATCAACATTTGTCGCGAATCATAATTCCCTACGATGAACAGA
ATGAGGTGCTCCGGAAAAGTTATCATCCTGATGGAGCCCATCGTTCGCGA
GGTACTGAGCTTCAAAAACGAACCGCTGCGTTGCGAAATCAATCAGCTGA
AGAGGATGCGCGCCTACTACAGATTGCAAGAACTGTTGTGAAGAATAAAG
TGGACATGCATGAAGCTGGACTGCAGACCAACCAAGAGAGACGAACATAC
AGCAAAACAGACAAGTACACATCGACAAACAATGTGGTAGCTGGAATCGA
GGTAGATGATTTGACGATCCGACTCTATATGGTGTCAATTCGATCCTCAT
CTGGGGCGTGCTCTGGTACAGTAATTGGGTCAAGGTGGATCCTAACGGCA
GCTCACTGCCAAGTACGTGAAGGGGGCGAAGCACTTGTCGGAGGAAACAC
AAATTTAAACGGTGCAAGCTACAGGGTAAATCGATTCATACCGCATCCTG
AGTACAGACTTTCGCAACAAGGGCAAGTAGAAGCAAATGATATCGCGGTG
ATAGAAACAGCTCCTATGAAACACGGAAGCGCGGTGCTGCTAAACATGAA
CGGAAAAGGGCCGGAGTCAGGAAGGTTTGTAAGGGCTAGTGGATATGGGC
AGATAGCAGAAGAATGGACCTCTGGTACGGAACGCATGTTACTTCAAGTT
GATATTCCAGTTGTTTCGTTCAAGAGATGCATTCAAGCCTTTGTCTCATA
TGGAGCACCGGAGTTTGCCCGTGCTCTACAAAGTAGAAGTCATATGTGTG
CGGGATATGCAGACGACGATTGCGCAGGGGACACATGCTACGGTGATTCA
GGTGGACCAATCGTGGCGCGGGCTGGCGGAAACTATGTGCAAGTCGGTGT
GGTGAGCGGCGGTATTGGATGTGCTAGGAAGGGACTGCCTGGATTCTACA
CTCGAGTGGGTCGATACTGGGATTGGATTCGAAACGTGACAAACGGAGAC
GTTGGTGGTTACAGTGTTCCTGGCGATGATGGAGCGGATGAAGTAAACGT
ATCCTCAATGGTAGATGAGGAAGAATCAGGGGAGGGGGTTGCTGCCCTGA
GAACGCTTGGCATCATCGCGGGCGCAGTTGGACTTGGTGTGCTTGTGTTA
GTATTGGCGGTTTTGCTGATAAAACGGATAGGAAGATTGGTCGTTGAACG
AACACCAAAGGGAAATTCAAGCGAGGCACGAGGGAAAAGTGCAAGCCTGG
ATAAATTGCTGCAATTTGAAAGAGGGACTGGGAATGGTGTGGATCTCGCT
GCAGGAATGAAAGATGGTAGCGAGATCGGTACCGATGCGGATAGTGAAAC
TGACCGAGACAATTCGGAATACCAAGGGCCAACGTACTCAAGAACAAGAA
CTGGCGAGTAA