Gcaud8760.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8760.t1
Unique Name	Gcaud8760.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	549

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_40_length_68803_cov_4.393963	contig	NODE_40_length_68803_cov_4.393963:28475..30121 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	9646.ENSAMEP00000002377
Preferred name	ST14
PFAMs	CUB,Ldl_recept_a,SEA,Trypsin
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K01312,ko:K01324,ko:K08670
KEGG Pathway	ko04080,ko04610,ko04972,ko04974,ko05164,ko05206,map04080,map04610,map04972,map04974,map05164,map05206
Evalue	2.18e-30
EggNOG OGs	COG5640@1\|root,KOG3627@2759\|Eukaryota,39S1N@33154\|Opisthokonta,3B9XY@33208\|Metazoa,3CWRU@33213\|Bilateria,487D3@7711\|Chordata,490AG@7742\|Vertebrata,3J6RV@40674\|Mammalia,3EJSM@33554\|Carnivora
EC	3.4.21.109,3.4.21.34,3.4.21.4
Description	of tumorigenicity 14
COG category	E
BRITE	ko00000,ko00001,ko01000,ko01002,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8760	Gcaud8760	Gracilaria caudata M_176_S67 male	gene	NODE_40_length_68803_cov_4.393963 28475..30121 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8760.t1.stop1	Gcaud8760.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_40_length_68803_cov_4.393963 28475..28477 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8760.t1.CDS1	Gcaud8760.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_40_length_68803_cov_4.393963 28475..30121 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8760.t1.exon1	Gcaud8760.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_40_length_68803_cov_4.393963 28475..30121 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8760.t1.start1	Gcaud8760.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_40_length_68803_cov_4.393963 30119..30121 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8760.t1	Gcaud8760.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_40_length_68803_cov_4.393963 28475..30121 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_40_length_68803_cov_4.393963:28475..30121-
coding sequence from alignment at NODE_40_length_68803_cov_4.393963:28475..30121-

mRNA sequence

>Gcaud8760.t1 ID=Gcaud8760.t1|Name=Gcaud8760.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=549bp
MTPPRRTSLLILLNLFIPLALALNQLPLRLHPSLRTPFSTQKLSACIPKG
TALLGATRLQSCPCNAHFTLSLPKHVAQNAHSIDFLIVTEHQLSQLSHKT
PHQVRFLPSLSVLNASATDLDAHTDRATFRTQPFQLPQGRYALVLRSNFE
RATCDLDARIAFETREAQCPEVLPTNSDRAAPRVVGGTIPTDDTRAHMVA
FINGNMFLCSGSLISATWAITAAHCKIHTGMIASVGGATVISGTGIRIRR
VFQHPGFRDDLRDSPNDIALVELRTAAPPSARFVHVNVNPTYPPPGAYAR
VTGYGETLRKNFGGTPTLRRVDVPVVAMSRCKMDYGRADILIARRLNNDV
QMCAGLVEGGCDACQGDSGGPLSTFDEDGNVIQIGVVSFGIGCARARFPG
VYTRLSAFEPWMKEQGAVYTRASSGTTLFAAGSASAAESSGFAIGSLTET
QSIIVVACSCALGAAIVISIGVLVYSRTRQRGGSSAPPPAPSAGHPTPER
PARVWVRQSTADGDASSISRIPAGPPAADGDGNVRTLGVERPPMGEST*

spliced messenger RNA

>Gcaud8760.t1 ID=Gcaud8760.t1|Name=Gcaud8760.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1647bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:28475..30121- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCCTCCTCGTCGCACCAGTCTTCTCATTTTGCTCAATCTGTTCAT
CCCGCTCGCACTCGCTCTCAACCAATTGCCGCTGCGTCTTCACCCCTCTC
TTCGCACCCCTTTCTCAACTCAAAAGCTTTCCGCCTGCATTCCCAAAGGA
ACCGCTCTTCTAGGCGCCACCCGTCTTCAATCCTGTCCATGTAACGCACA
CTTCACCTTATCTTTACCTAAACATGTCGCTCAAAACGCTCATTCTATTG
ACTTCTTAATCGTAACCGAACATCAGCTCTCTCAACTTTCACACAAGACG
CCCCACCAGGTGCGATTCCTTCCTTCTCTCTCCGTGCTGAACGCGAGCGC
CACCGACCTTGACGCGCACACCGACCGCGCTACTTTCCGTACACAGCCGT
TTCAACTGCCGCAAGGTCGATACGCGCTAGTGCTGCGTTCCAATTTTGAG
CGCGCGACGTGTGATCTCGATGCACGTATAGCGTTCGAGACTCGCGAGGC
GCAATGTCCCGAGGTGCTTCCCACTAACAGTGATCGAGCCGCGCCCCGCG
TGGTAGGTGGAACCATTCCCACCGATGACACTCGCGCACACATGGTAGCA
TTCATCAACGGCAATATGTTCTTATGCTCCGGCTCATTAATTTCGGCCAC
ATGGGCTATCACAGCCGCTCACTGCAAAATTCATACGGGCATGATTGCTT
CGGTTGGCGGTGCCACCGTCATCAGTGGTACTGGCATTCGGATACGACGC
GTATTTCAACATCCCGGTTTCAGGGATGACTTACGAGATTCTCCTAACGA
TATTGCGTTGGTTGAATTGCGAACTGCCGCGCCTCCATCTGCTCGTTTTG
TTCATGTCAACGTGAATCCGACGTATCCGCCACCCGGCGCTTATGCACGT
GTTACAGGCTACGGAGAGACTCTTCGAAAGAATTTTGGCGGAACTCCAAC
ACTGCGACGGGTGGATGTTCCGGTGGTTGCTATGAGCAGGTGTAAGATGG
ACTACGGCAGGGCAGACATATTGATCGCAAGGCGGCTGAACAACGACGTT
CAAATGTGCGCCGGCTTGGTGGAGGGGGGATGCGATGCTTGTCAGGGCGA
TAGCGGCGGTCCGCTGTCTACGTTCGACGAGGATGGAAACGTGATCCAAA
TCGGCGTGGTTTCGTTCGGTATCGGGTGCGCGCGGGCAAGATTTCCCGGT
GTTTACACGAGACTGTCGGCTTTCGAACCATGGATGAAAGAACAGGGCGC
GGTTTACACGAGAGCTAGTTCTGGAACAACTCTGTTCGCTGCGGGCAGTG
CCTCGGCGGCTGAAAGTTCAGGTTTCGCGATTGGCTCGCTGACGGAGACG
CAGAGCATTATTGTGGTGGCGTGTTCATGCGCGCTAGGCGCTGCGATCGT
GATTAGTATCGGTGTACTGGTGTACTCCAGAACAAGACAAAGAGGCGGGA
GTAGCGCACCACCGCCGGCGCCTAGCGCGGGTCACCCGACGCCGGAGAGA
CCAGCGCGGGTGTGGGTGAGACAGTCGACGGCTGATGGGGACGCTAGCAG
CATTTCGCGAATTCCGGCGGGTCCTCCCGCGGCGGACGGTGACGGTAACG
TGCGGACTCTGGGGGTGGAGAGACCGCCGATGGGAGAGTCGACATAA

protein sequence of Gcaud8760.t1

>Gcaud8760.t1 ID=Gcaud8760.t1|Name=Gcaud8760.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=549bp
MTPPRRTSLLILLNLFIPLALALNQLPLRLHPSLRTPFSTQKLSACIPKG
TALLGATRLQSCPCNAHFTLSLPKHVAQNAHSIDFLIVTEHQLSQLSHKT
PHQVRFLPSLSVLNASATDLDAHTDRATFRTQPFQLPQGRYALVLRSNFE
RATCDLDARIAFETREAQCPEVLPTNSDRAAPRVVGGTIPTDDTRAHMVA
FINGNMFLCSGSLISATWAITAAHCKIHTGMIASVGGATVISGTGIRIRR
VFQHPGFRDDLRDSPNDIALVELRTAAPPSARFVHVNVNPTYPPPGAYAR
VTGYGETLRKNFGGTPTLRRVDVPVVAMSRCKMDYGRADILIARRLNNDV
QMCAGLVEGGCDACQGDSGGPLSTFDEDGNVIQIGVVSFGIGCARARFPG
VYTRLSAFEPWMKEQGAVYTRASSGTTLFAAGSASAAESSGFAIGSLTET
QSIIVVACSCALGAAIVISIGVLVYSRTRQRGGSSAPPPAPSAGHPTPER
PARVWVRQSTADGDASSISRIPAGPPAADGDGNVRTLGVERPPMGEST*

mRNA from alignment at NODE_40_length_68803_cov_4.393963:28475..30121-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8760.t1 ID=Gcaud8760.t1|Name=Gcaud8760.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1647bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:28475..30121- (Gracilaria caudata M_176_S67 male)
ATGACGCCTCCTCGTCGCACCAGTCTTCTCATTTTGCTCAATCTGTTCAT
CCCGCTCGCACTCGCTCTCAACCAATTGCCGCTGCGTCTTCACCCCTCTC
TTCGCACCCCTTTCTCAACTCAAAAGCTTTCCGCCTGCATTCCCAAAGGA
ACCGCTCTTCTAGGCGCCACCCGTCTTCAATCCTGTCCATGTAACGCACA
CTTCACCTTATCTTTACCTAAACATGTCGCTCAAAACGCTCATTCTATTG
ACTTCTTAATCGTAACCGAACATCAGCTCTCTCAACTTTCACACAAGACG
CCCCACCAGGTGCGATTCCTTCCTTCTCTCTCCGTGCTGAACGCGAGCGC
CACCGACCTTGACGCGCACACCGACCGCGCTACTTTCCGTACACAGCCGT
TTCAACTGCCGCAAGGTCGATACGCGCTAGTGCTGCGTTCCAATTTTGAG
CGCGCGACGTGTGATCTCGATGCACGTATAGCGTTCGAGACTCGCGAGGC
GCAATGTCCCGAGGTGCTTCCCACTAACAGTGATCGAGCCGCGCCCCGCG
TGGTAGGTGGAACCATTCCCACCGATGACACTCGCGCACACATGGTAGCA
TTCATCAACGGCAATATGTTCTTATGCTCCGGCTCATTAATTTCGGCCAC
ATGGGCTATCACAGCCGCTCACTGCAAAATTCATACGGGCATGATTGCTT
CGGTTGGCGGTGCCACCGTCATCAGTGGTACTGGCATTCGGATACGACGC
GTATTTCAACATCCCGGTTTCAGGGATGACTTACGAGATTCTCCTAACGA
TATTGCGTTGGTTGAATTGCGAACTGCCGCGCCTCCATCTGCTCGTTTTG
TTCATGTCAACGTGAATCCGACGTATCCGCCACCCGGCGCTTATGCACGT
GTTACAGGCTACGGAGAGACTCTTCGAAAGAATTTTGGCGGAACTCCAAC
ACTGCGACGGGTGGATGTTCCGGTGGTTGCTATGAGCAGGTGTAAGATGG
ACTACGGCAGGGCAGACATATTGATCGCAAGGCGGCTGAACAACGACGTT
CAAATGTGCGCCGGCTTGGTGGAGGGGGGATGCGATGCTTGTCAGGGCGA
TAGCGGCGGTCCGCTGTCTACGTTCGACGAGGATGGAAACGTGATCCAAA
TCGGCGTGGTTTCGTTCGGTATCGGGTGCGCGCGGGCAAGATTTCCCGGT
GTTTACACGAGACTGTCGGCTTTCGAACCATGGATGAAAGAACAGGGCGC
GGTTTACACGAGAGCTAGTTCTGGAACAACTCTGTTCGCTGCGGGCAGTG
CCTCGGCGGCTGAAAGTTCAGGTTTCGCGATTGGCTCGCTGACGGAGACG
CAGAGCATTATTGTGGTGGCGTGTTCATGCGCGCTAGGCGCTGCGATCGT
GATTAGTATCGGTGTACTGGTGTACTCCAGAACAAGACAAAGAGGCGGGA
GTAGCGCACCACCGCCGGCGCCTAGCGCGGGTCACCCGACGCCGGAGAGA
CCAGCGCGGGTGTGGGTGAGACAGTCGACGGCTGATGGGGACGCTAGCAG
CATTTCGCGAATTCCGGCGGGTCCTCCCGCGGCGGACGGTGACGGTAACG
TGCGGACTCTGGGGGTGGAGAGACCGCCGATGGGAGAGTCGACATAA

Coding sequence (CDS) from alignment at NODE_40_length_68803_cov_4.393963:28475..30121-

>Gcaud8760.t1 ID=Gcaud8760.t1|Name=Gcaud8760.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1647bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:28475..30121- (Gracilaria caudata M_176_S67 male)
ATGACGCCTCCTCGTCGCACCAGTCTTCTCATTTTGCTCAATCTGTTCAT
CCCGCTCGCACTCGCTCTCAACCAATTGCCGCTGCGTCTTCACCCCTCTC
TTCGCACCCCTTTCTCAACTCAAAAGCTTTCCGCCTGCATTCCCAAAGGA
ACCGCTCTTCTAGGCGCCACCCGTCTTCAATCCTGTCCATGTAACGCACA
CTTCACCTTATCTTTACCTAAACATGTCGCTCAAAACGCTCATTCTATTG
ACTTCTTAATCGTAACCGAACATCAGCTCTCTCAACTTTCACACAAGACG
CCCCACCAGGTGCGATTCCTTCCTTCTCTCTCCGTGCTGAACGCGAGCGC
CACCGACCTTGACGCGCACACCGACCGCGCTACTTTCCGTACACAGCCGT
TTCAACTGCCGCAAGGTCGATACGCGCTAGTGCTGCGTTCCAATTTTGAG
CGCGCGACGTGTGATCTCGATGCACGTATAGCGTTCGAGACTCGCGAGGC
GCAATGTCCCGAGGTGCTTCCCACTAACAGTGATCGAGCCGCGCCCCGCG
TGGTAGGTGGAACCATTCCCACCGATGACACTCGCGCACACATGGTAGCA
TTCATCAACGGCAATATGTTCTTATGCTCCGGCTCATTAATTTCGGCCAC
ATGGGCTATCACAGCCGCTCACTGCAAAATTCATACGGGCATGATTGCTT
CGGTTGGCGGTGCCACCGTCATCAGTGGTACTGGCATTCGGATACGACGC
GTATTTCAACATCCCGGTTTCAGGGATGACTTACGAGATTCTCCTAACGA
TATTGCGTTGGTTGAATTGCGAACTGCCGCGCCTCCATCTGCTCGTTTTG
TTCATGTCAACGTGAATCCGACGTATCCGCCACCCGGCGCTTATGCACGT
GTTACAGGCTACGGAGAGACTCTTCGAAAGAATTTTGGCGGAACTCCAAC
ACTGCGACGGGTGGATGTTCCGGTGGTTGCTATGAGCAGGTGTAAGATGG
ACTACGGCAGGGCAGACATATTGATCGCAAGGCGGCTGAACAACGACGTT
CAAATGTGCGCCGGCTTGGTGGAGGGGGGATGCGATGCTTGTCAGGGCGA
TAGCGGCGGTCCGCTGTCTACGTTCGACGAGGATGGAAACGTGATCCAAA
TCGGCGTGGTTTCGTTCGGTATCGGGTGCGCGCGGGCAAGATTTCCCGGT
GTTTACACGAGACTGTCGGCTTTCGAACCATGGATGAAAGAACAGGGCGC
GGTTTACACGAGAGCTAGTTCTGGAACAACTCTGTTCGCTGCGGGCAGTG
CCTCGGCGGCTGAAAGTTCAGGTTTCGCGATTGGCTCGCTGACGGAGACG
CAGAGCATTATTGTGGTGGCGTGTTCATGCGCGCTAGGCGCTGCGATCGT
GATTAGTATCGGTGTACTGGTGTACTCCAGAACAAGACAAAGAGGCGGGA
GTAGCGCACCACCGCCGGCGCCTAGCGCGGGTCACCCGACGCCGGAGAGA
CCAGCGCGGGTGTGGGTGAGACAGTCGACGGCTGATGGGGACGCTAGCAG
CATTTCGCGAATTCCGGCGGGTCCTCCCGCGGCGGACGGTGACGGTAACG
TGCGGACTCTGGGGGTGGAGAGACCGCCGATGGGAGAGTCGACATAA