Gcaud8759.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8759.t1
Unique Name	Gcaud8759.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	384

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_40_length_68803_cov_4.393963	contig	NODE_40_length_68803_cov_4.393963:26220..27371 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706060.1
PFAMs	Branch
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K00742,ko:K00771,ko:K02836,ko:K14763,ko:K20891
KEGG Reaction	R05925,R06189
KEGG Pathway	ko00532,ko00534,ko00601,ko01100,map00532,map00534,map00601,map01100
KEGG Module	M00057
GOs	GO:0000139,GO:0000902,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0006029,GO:0006807,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008194,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009653,GO:0009826,GO:0009987,GO:0010033,GO:0010721,GO:0010975,GO:0010977,GO:0012505,GO:0015012,GO:0015020,GO:0016020,GO:0016043,GO:0016049,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0022008,GO:0030154,GO:0030166,GO:0030201,GO:0031090,GO:0031344,GO:0031345,GO:0031984,GO:0032101,GO:0032102,GO:0032501,GO:0032502,GO:0032989,GO:0034097,GO:0034645,GO:0040007,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048589,GO:0048679,GO:0048681,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050650,GO:0050654,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051129,GO:0051239,GO:0051241,GO:0051960,GO:0051961,GO:0060284,GO:0060560,GO:0065007,GO:0070555,GO:0070570,GO:0070571,GO:0071704,GO:0071840,GO:0080134,GO:0080135,GO:0098588,GO:0098791,GO:0120035,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903034,GO:1903035,GO:2000026
Evalue	1.75e-38
EggNOG OGs	KOG0799@1\|root,KOG0799@2759\|Eukaryota
EC	2.4.1.150,2.4.2.26
Description	acetylglucosaminyltransferase activity
COG category	O
CAZy	GT14
BRITE	ko00000,ko00001,ko00002,ko01000,ko01003,ko03009,ko03012

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8759	Gcaud8759	Gracilaria caudata M_176_S67 male	gene	NODE_40_length_68803_cov_4.393963 26220..27371 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8759.t1.stop1	Gcaud8759.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_40_length_68803_cov_4.393963 26220..26222 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8759.t1.CDS1	Gcaud8759.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_40_length_68803_cov_4.393963 26220..27371 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8759.t1.exon1	Gcaud8759.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_40_length_68803_cov_4.393963 26220..27371 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8759.t1.start1	Gcaud8759.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_40_length_68803_cov_4.393963 27369..27371 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8759.t1	Gcaud8759.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_40_length_68803_cov_4.393963 26220..27371 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_40_length_68803_cov_4.393963:26220..27371-
coding sequence from alignment at NODE_40_length_68803_cov_4.393963:26220..27371-

mRNA sequence

>Gcaud8759.t1 ID=Gcaud8759.t1|Name=Gcaud8759.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=384bp
MFIPKRSAKLALFIQAYDRTLPLLPSLLDAIWHPDNIYAIHIDKRTHPDL
IKPLLRLLDNANYSSNVHLIPRQYVTYLGITTVLNTLNAISFLLDKDETW
DYFINLSAADYPLVTPNQLRDILGQPDVLDRQLSFVQTTNFSNAAVGSVY
DARFGRLYVDSATYSVIRPHDPHSEQATKDPCIRGCLKSAGPAVHPLHKA
EVPVKIVKSEAWIMLHRSAADFALNSGLSRQLIAFFANVHCPEEFFFSTL
LTHAEETRDSIVHDAFRLVLWGVFKKKSRPPAIDSGDIPNMKELITDKGG
LFVRKRMKSDSDMRAYIDGHLLGISTQAQRDSKMQKSSEMFSRRQSMRVK
CAVQYKVGEAAQSNAVSYRSCVFDSVKATPLTR*

spliced messenger RNA

>Gcaud8759.t1 ID=Gcaud8759.t1|Name=Gcaud8759.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1152bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:26220..27371- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCATTCCGAAGCGCTCCGCTAAGCTGGCCTTATTCATCCAGGCGTA
CGACCGAACCCTTCCCCTCTTGCCCTCATTATTGGACGCAATATGGCATC
CCGACAACATATATGCCATTCATATCGACAAGAGAACTCACCCGGACCTC
ATAAAGCCACTTCTGCGTTTGCTTGACAATGCAAATTATTCCTCAAACGT
TCATCTAATTCCGCGTCAATACGTCACTTATCTTGGTATCACCACCGTAC
TGAACACGCTTAACGCCATTTCGTTCCTGCTCGACAAGGACGAAACATGG
GATTACTTCATCAATCTCAGTGCCGCTGACTACCCGCTCGTCACGCCGAA
CCAACTGCGTGACATTCTCGGGCAGCCAGATGTGCTAGACAGGCAGCTCA
GTTTCGTCCAAACCACAAACTTTTCAAACGCAGCCGTCGGCTCCGTTTAT
GACGCTCGTTTTGGTCGGCTGTACGTCGACTCGGCTACGTACAGTGTGAT
CCGACCTCATGATCCTCACAGCGAGCAAGCCACAAAGGACCCCTGTATTA
GGGGCTGTTTGAAAAGTGCTGGCCCGGCTGTTCATCCTTTGCACAAGGCT
GAGGTGCCGGTCAAAATAGTCAAGTCTGAGGCGTGGATCATGTTGCATCG
ATCGGCTGCTGACTTCGCTCTCAACTCCGGTCTTTCTCGTCAATTGATTG
CATTCTTTGCGAATGTTCATTGCCCTGAGGAATTCTTCTTCAGCACGCTG
TTAACGCACGCCGAGGAAACGAGAGATAGCATTGTTCATGACGCGTTTCG
ACTGGTGCTCTGGGGCGTGTTCAAGAAAAAGAGCCGCCCTCCTGCAATTG
ACTCGGGAGACATTCCCAACATGAAGGAATTGATCACGGACAAGGGCGGG
CTGTTTGTTCGGAAGCGTATGAAAAGTGACTCAGATATGCGCGCGTATAT
CGACGGTCATTTGTTGGGCATTTCTACACAGGCTCAGAGAGACAGCAAGA
TGCAGAAGTCATCCGAAATGTTCTCTCGTCGACAGAGCATGCGCGTCAAG
TGTGCGGTCCAGTACAAGGTAGGGGAGGCCGCTCAGTCGAATGCGGTGTC
TTACAGAAGTTGCGTTTTTGACTCGGTGAAGGCCACGCCCCTCACCCGCT
AA

protein sequence of Gcaud8759.t1

>Gcaud8759.t1 ID=Gcaud8759.t1|Name=Gcaud8759.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=384bp
MFIPKRSAKLALFIQAYDRTLPLLPSLLDAIWHPDNIYAIHIDKRTHPDL
IKPLLRLLDNANYSSNVHLIPRQYVTYLGITTVLNTLNAISFLLDKDETW
DYFINLSAADYPLVTPNQLRDILGQPDVLDRQLSFVQTTNFSNAAVGSVY
DARFGRLYVDSATYSVIRPHDPHSEQATKDPCIRGCLKSAGPAVHPLHKA
EVPVKIVKSEAWIMLHRSAADFALNSGLSRQLIAFFANVHCPEEFFFSTL
LTHAEETRDSIVHDAFRLVLWGVFKKKSRPPAIDSGDIPNMKELITDKGG
LFVRKRMKSDSDMRAYIDGHLLGISTQAQRDSKMQKSSEMFSRRQSMRVK
CAVQYKVGEAAQSNAVSYRSCVFDSVKATPLTR*

mRNA from alignment at NODE_40_length_68803_cov_4.393963:26220..27371-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8759.t1 ID=Gcaud8759.t1|Name=Gcaud8759.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1152bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:26220..27371- (Gracilaria caudata M_176_S67 male)
ATGTTCATTCCGAAGCGCTCCGCTAAGCTGGCCTTATTCATCCAGGCGTA
CGACCGAACCCTTCCCCTCTTGCCCTCATTATTGGACGCAATATGGCATC
CCGACAACATATATGCCATTCATATCGACAAGAGAACTCACCCGGACCTC
ATAAAGCCACTTCTGCGTTTGCTTGACAATGCAAATTATTCCTCAAACGT
TCATCTAATTCCGCGTCAATACGTCACTTATCTTGGTATCACCACCGTAC
TGAACACGCTTAACGCCATTTCGTTCCTGCTCGACAAGGACGAAACATGG
GATTACTTCATCAATCTCAGTGCCGCTGACTACCCGCTCGTCACGCCGAA
CCAACTGCGTGACATTCTCGGGCAGCCAGATGTGCTAGACAGGCAGCTCA
GTTTCGTCCAAACCACAAACTTTTCAAACGCAGCCGTCGGCTCCGTTTAT
GACGCTCGTTTTGGTCGGCTGTACGTCGACTCGGCTACGTACAGTGTGAT
CCGACCTCATGATCCTCACAGCGAGCAAGCCACAAAGGACCCCTGTATTA
GGGGCTGTTTGAAAAGTGCTGGCCCGGCTGTTCATCCTTTGCACAAGGCT
GAGGTGCCGGTCAAAATAGTCAAGTCTGAGGCGTGGATCATGTTGCATCG
ATCGGCTGCTGACTTCGCTCTCAACTCCGGTCTTTCTCGTCAATTGATTG
CATTCTTTGCGAATGTTCATTGCCCTGAGGAATTCTTCTTCAGCACGCTG
TTAACGCACGCCGAGGAAACGAGAGATAGCATTGTTCATGACGCGTTTCG
ACTGGTGCTCTGGGGCGTGTTCAAGAAAAAGAGCCGCCCTCCTGCAATTG
ACTCGGGAGACATTCCCAACATGAAGGAATTGATCACGGACAAGGGCGGG
CTGTTTGTTCGGAAGCGTATGAAAAGTGACTCAGATATGCGCGCGTATAT
CGACGGTCATTTGTTGGGCATTTCTACACAGGCTCAGAGAGACAGCAAGA
TGCAGAAGTCATCCGAAATGTTCTCTCGTCGACAGAGCATGCGCGTCAAG
TGTGCGGTCCAGTACAAGGTAGGGGAGGCCGCTCAGTCGAATGCGGTGTC
TTACAGAAGTTGCGTTTTTGACTCGGTGAAGGCCACGCCCCTCACCCGCT
AA

Coding sequence (CDS) from alignment at NODE_40_length_68803_cov_4.393963:26220..27371-

>Gcaud8759.t1 ID=Gcaud8759.t1|Name=Gcaud8759.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1152bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:26220..27371- (Gracilaria caudata M_176_S67 male)
ATGTTCATTCCGAAGCGCTCCGCTAAGCTGGCCTTATTCATCCAGGCGTA
CGACCGAACCCTTCCCCTCTTGCCCTCATTATTGGACGCAATATGGCATC
CCGACAACATATATGCCATTCATATCGACAAGAGAACTCACCCGGACCTC
ATAAAGCCACTTCTGCGTTTGCTTGACAATGCAAATTATTCCTCAAACGT
TCATCTAATTCCGCGTCAATACGTCACTTATCTTGGTATCACCACCGTAC
TGAACACGCTTAACGCCATTTCGTTCCTGCTCGACAAGGACGAAACATGG
GATTACTTCATCAATCTCAGTGCCGCTGACTACCCGCTCGTCACGCCGAA
CCAACTGCGTGACATTCTCGGGCAGCCAGATGTGCTAGACAGGCAGCTCA
GTTTCGTCCAAACCACAAACTTTTCAAACGCAGCCGTCGGCTCCGTTTAT
GACGCTCGTTTTGGTCGGCTGTACGTCGACTCGGCTACGTACAGTGTGAT
CCGACCTCATGATCCTCACAGCGAGCAAGCCACAAAGGACCCCTGTATTA
GGGGCTGTTTGAAAAGTGCTGGCCCGGCTGTTCATCCTTTGCACAAGGCT
GAGGTGCCGGTCAAAATAGTCAAGTCTGAGGCGTGGATCATGTTGCATCG
ATCGGCTGCTGACTTCGCTCTCAACTCCGGTCTTTCTCGTCAATTGATTG
CATTCTTTGCGAATGTTCATTGCCCTGAGGAATTCTTCTTCAGCACGCTG
TTAACGCACGCCGAGGAAACGAGAGATAGCATTGTTCATGACGCGTTTCG
ACTGGTGCTCTGGGGCGTGTTCAAGAAAAAGAGCCGCCCTCCTGCAATTG
ACTCGGGAGACATTCCCAACATGAAGGAATTGATCACGGACAAGGGCGGG
CTGTTTGTTCGGAAGCGTATGAAAAGTGACTCAGATATGCGCGCGTATAT
CGACGGTCATTTGTTGGGCATTTCTACACAGGCTCAGAGAGACAGCAAGA
TGCAGAAGTCATCCGAAATGTTCTCTCGTCGACAGAGCATGCGCGTCAAG
TGTGCGGTCCAGTACAAGGTAGGGGAGGCCGCTCAGTCGAATGCGGTGTC
TTACAGAAGTTGCGTTTTTGACTCGGTGAAGGCCACGCCCCTCACCCGCT
AA