Gcaud8753.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8753.t1
Unique Name	Gcaud8753.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	418

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_40_length_68803_cov_4.393963	contig	NODE_40_length_68803_cov_4.393963:14328..15581 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005702677.1
Preferred name	RMD1
PFAMs	DUF155
Max annot lvl	2759\|Eukaryota
GOs	GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005783,GO:0008150,GO:0008152,GO:0010467,GO:0012505,GO:0016020,GO:0031090,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:0098588,GO:0098805,GO:0098852,GO:0140053
Evalue	3.48e-47
EggNOG OGs	COG1723@1\|root,KOG2861@2759\|Eukaryota
Description	positive regulation of mitochondrial translation
COG category	H

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8753	Gcaud8753	Gracilaria caudata M_176_S67 male	gene	NODE_40_length_68803_cov_4.393963 14328..15581 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8753.t1.stop1	Gcaud8753.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_40_length_68803_cov_4.393963 14328..14330 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8753.t1.CDS1	Gcaud8753.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_40_length_68803_cov_4.393963 14328..15581 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8753.t1.exon1	Gcaud8753.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_40_length_68803_cov_4.393963 14328..15581 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8753.t1.start1	Gcaud8753.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_40_length_68803_cov_4.393963 15579..15581 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8753.t1	Gcaud8753.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_40_length_68803_cov_4.393963 14328..15581 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_40_length_68803_cov_4.393963:14328..15581-
coding sequence from alignment at NODE_40_length_68803_cov_4.393963:14328..15581-

mRNA sequence

>Gcaud8753.t1 ID=Gcaud8753.t1|Name=Gcaud8753.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=418bp
MFRLGHGVTPTTLTCQLQNRGVRMGSGFSESKSSKRSSSQNSAPRSPSSV
QPFSRSPGAEQRMNSKTVYFMAIANEFQMSSLYRRLLRCMDEYGGIHVGS
VGSVLRVAKTEQHPENRTEAFIFAYGCMVVWGAAKDRDDFLSLVVEDAVQ
LRPVPAVDDMKYVYGKAGALRRDIITLRTRYRAVSMEGGASNGDGAKKNG
FKPNGSRSGTDDMDPVLERLAISCALAQSIKLGAFESALRRTIENTRHLP
EELASTGKIGASRREVSRLMGQLFLARYRYHLSGDLLMTPAFFWENNMYL
PTYNRVERYLEVRERGEVLNKRVEVMQELYKLLGDELTHKNSMALELAIT
VMIAFEILLTLITLAKESMRSMFSACALFAGLIGIGWALWMLYCRRRRSD
VRGGLSIGNYRFREWGI*

spliced messenger RNA

>Gcaud8753.t1 ID=Gcaud8753.t1|Name=Gcaud8753.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1254bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:14328..15581- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCCGCCTCGGCCATGGCGTAACACCTACCACGCTAACTTGCCAACT
GCAAAACCGTGGAGTTCGAATGGGCTCAGGCTTTTCTGAGAGCAAATCGA
GCAAACGATCTTCATCACAGAATTCTGCTCCCCGGTCTCCGTCTTCTGTA
CAACCTTTCTCCAGGTCTCCTGGTGCTGAGCAGCGCATGAATTCCAAAAC
CGTGTACTTCATGGCGATAGCTAACGAATTTCAAATGTCATCCCTATATC
GTCGTTTATTGCGTTGCATGGACGAGTATGGCGGCATTCACGTAGGTTCC
GTAGGTTCTGTGCTCAGAGTCGCCAAAACTGAACAACACCCTGAAAATCG
TACCGAAGCATTCATCTTTGCGTACGGGTGCATGGTCGTGTGGGGTGCCG
CAAAAGACAGAGATGACTTCTTATCTCTTGTTGTTGAAGACGCAGTGCAG
CTTCGACCAGTCCCAGCTGTAGATGATATGAAGTACGTTTACGGAAAGGC
TGGAGCCCTTCGCAGAGATATCATCACTCTGAGAACACGATACCGAGCTG
TTTCTATGGAAGGCGGTGCTTCCAACGGTGACGGCGCGAAGAAAAACGGT
TTTAAACCCAATGGCTCTCGTTCTGGGACTGATGATATGGATCCAGTTCT
GGAACGTCTAGCGATTTCATGCGCACTCGCTCAGAGCATCAAGCTTGGCG
CATTCGAATCGGCGCTCAGACGGACTATCGAAAACACCAGACATTTGCCA
GAGGAACTGGCTTCGACGGGGAAGATTGGTGCTTCAAGGCGAGAAGTATC
ACGGTTAATGGGACAACTCTTCCTTGCCAGATATCGATATCACCTTAGTG
GAGACTTGCTTATGACACCAGCCTTCTTTTGGGAGAACAATATGTATCTA
CCCACGTACAACAGAGTAGAGCGCTACCTGGAAGTTCGTGAACGCGGTGA
AGTACTGAACAAGCGCGTAGAAGTGATGCAAGAGTTGTACAAGTTGCTTG
GTGATGAGTTGACTCATAAGAACTCCATGGCTTTAGAGTTGGCGATTACG
GTCATGATTGCCTTTGAGATTCTTCTAACCCTCATCACGCTGGCAAAAGA
AAGTATGCGAAGCATGTTCTCGGCATGTGCCTTGTTTGCAGGTCTCATCG
GAATTGGATGGGCGTTATGGATGCTGTATTGTCGGCGTCGACGTTCCGAC
GTTCGTGGTGGCCTATCGATTGGAAACTATAGATTCAGAGAATGGGGGAT
ATAG

protein sequence of Gcaud8753.t1

>Gcaud8753.t1 ID=Gcaud8753.t1|Name=Gcaud8753.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=418bp
MFRLGHGVTPTTLTCQLQNRGVRMGSGFSESKSSKRSSSQNSAPRSPSSV
QPFSRSPGAEQRMNSKTVYFMAIANEFQMSSLYRRLLRCMDEYGGIHVGS
VGSVLRVAKTEQHPENRTEAFIFAYGCMVVWGAAKDRDDFLSLVVEDAVQ
LRPVPAVDDMKYVYGKAGALRRDIITLRTRYRAVSMEGGASNGDGAKKNG
FKPNGSRSGTDDMDPVLERLAISCALAQSIKLGAFESALRRTIENTRHLP
EELASTGKIGASRREVSRLMGQLFLARYRYHLSGDLLMTPAFFWENNMYL
PTYNRVERYLEVRERGEVLNKRVEVMQELYKLLGDELTHKNSMALELAIT
VMIAFEILLTLITLAKESMRSMFSACALFAGLIGIGWALWMLYCRRRRSD
VRGGLSIGNYRFREWGI*

mRNA from alignment at NODE_40_length_68803_cov_4.393963:14328..15581-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8753.t1 ID=Gcaud8753.t1|Name=Gcaud8753.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1254bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:14328..15581- (Gracilaria caudata M_176_S67 male)
ATGTTCCGCCTCGGCCATGGCGTAACACCTACCACGCTAACTTGCCAACT
GCAAAACCGTGGAGTTCGAATGGGCTCAGGCTTTTCTGAGAGCAAATCGA
GCAAACGATCTTCATCACAGAATTCTGCTCCCCGGTCTCCGTCTTCTGTA
CAACCTTTCTCCAGGTCTCCTGGTGCTGAGCAGCGCATGAATTCCAAAAC
CGTGTACTTCATGGCGATAGCTAACGAATTTCAAATGTCATCCCTATATC
GTCGTTTATTGCGTTGCATGGACGAGTATGGCGGCATTCACGTAGGTTCC
GTAGGTTCTGTGCTCAGAGTCGCCAAAACTGAACAACACCCTGAAAATCG
TACCGAAGCATTCATCTTTGCGTACGGGTGCATGGTCGTGTGGGGTGCCG
CAAAAGACAGAGATGACTTCTTATCTCTTGTTGTTGAAGACGCAGTGCAG
CTTCGACCAGTCCCAGCTGTAGATGATATGAAGTACGTTTACGGAAAGGC
TGGAGCCCTTCGCAGAGATATCATCACTCTGAGAACACGATACCGAGCTG
TTTCTATGGAAGGCGGTGCTTCCAACGGTGACGGCGCGAAGAAAAACGGT
TTTAAACCCAATGGCTCTCGTTCTGGGACTGATGATATGGATCCAGTTCT
GGAACGTCTAGCGATTTCATGCGCACTCGCTCAGAGCATCAAGCTTGGCG
CATTCGAATCGGCGCTCAGACGGACTATCGAAAACACCAGACATTTGCCA
GAGGAACTGGCTTCGACGGGGAAGATTGGTGCTTCAAGGCGAGAAGTATC
ACGGTTAATGGGACAACTCTTCCTTGCCAGATATCGATATCACCTTAGTG
GAGACTTGCTTATGACACCAGCCTTCTTTTGGGAGAACAATATGTATCTA
CCCACGTACAACAGAGTAGAGCGCTACCTGGAAGTTCGTGAACGCGGTGA
AGTACTGAACAAGCGCGTAGAAGTGATGCAAGAGTTGTACAAGTTGCTTG
GTGATGAGTTGACTCATAAGAACTCCATGGCTTTAGAGTTGGCGATTACG
GTCATGATTGCCTTTGAGATTCTTCTAACCCTCATCACGCTGGCAAAAGA
AAGTATGCGAAGCATGTTCTCGGCATGTGCCTTGTTTGCAGGTCTCATCG
GAATTGGATGGGCGTTATGGATGCTGTATTGTCGGCGTCGACGTTCCGAC
GTTCGTGGTGGCCTATCGATTGGAAACTATAGATTCAGAGAATGGGGGAT
ATAG

Coding sequence (CDS) from alignment at NODE_40_length_68803_cov_4.393963:14328..15581-

>Gcaud8753.t1 ID=Gcaud8753.t1|Name=Gcaud8753.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1254bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:14328..15581- (Gracilaria caudata M_176_S67 male)
ATGTTCCGCCTCGGCCATGGCGTAACACCTACCACGCTAACTTGCCAACT
GCAAAACCGTGGAGTTCGAATGGGCTCAGGCTTTTCTGAGAGCAAATCGA
GCAAACGATCTTCATCACAGAATTCTGCTCCCCGGTCTCCGTCTTCTGTA
CAACCTTTCTCCAGGTCTCCTGGTGCTGAGCAGCGCATGAATTCCAAAAC
CGTGTACTTCATGGCGATAGCTAACGAATTTCAAATGTCATCCCTATATC
GTCGTTTATTGCGTTGCATGGACGAGTATGGCGGCATTCACGTAGGTTCC
GTAGGTTCTGTGCTCAGAGTCGCCAAAACTGAACAACACCCTGAAAATCG
TACCGAAGCATTCATCTTTGCGTACGGGTGCATGGTCGTGTGGGGTGCCG
CAAAAGACAGAGATGACTTCTTATCTCTTGTTGTTGAAGACGCAGTGCAG
CTTCGACCAGTCCCAGCTGTAGATGATATGAAGTACGTTTACGGAAAGGC
TGGAGCCCTTCGCAGAGATATCATCACTCTGAGAACACGATACCGAGCTG
TTTCTATGGAAGGCGGTGCTTCCAACGGTGACGGCGCGAAGAAAAACGGT
TTTAAACCCAATGGCTCTCGTTCTGGGACTGATGATATGGATCCAGTTCT
GGAACGTCTAGCGATTTCATGCGCACTCGCTCAGAGCATCAAGCTTGGCG
CATTCGAATCGGCGCTCAGACGGACTATCGAAAACACCAGACATTTGCCA
GAGGAACTGGCTTCGACGGGGAAGATTGGTGCTTCAAGGCGAGAAGTATC
ACGGTTAATGGGACAACTCTTCCTTGCCAGATATCGATATCACCTTAGTG
GAGACTTGCTTATGACACCAGCCTTCTTTTGGGAGAACAATATGTATCTA
CCCACGTACAACAGAGTAGAGCGCTACCTGGAAGTTCGTGAACGCGGTGA
AGTACTGAACAAGCGCGTAGAAGTGATGCAAGAGTTGTACAAGTTGCTTG
GTGATGAGTTGACTCATAAGAACTCCATGGCTTTAGAGTTGGCGATTACG
GTCATGATTGCCTTTGAGATTCTTCTAACCCTCATCACGCTGGCAAAAGA
AAGTATGCGAAGCATGTTCTCGGCATGTGCCTTGTTTGCAGGTCTCATCG
GAATTGGATGGGCGTTATGGATGCTGTATTGTCGGCGTCGACGTTCCGAC
GTTCGTGGTGGCCTATCGATTGGAAACTATAGATTCAGAGAATGGGGGAT
ATAG