Gcaud8750.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8750.t1
Unique NameGcaud8750.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length249
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_40_length_68803_cov_4.393963contigNODE_40_length_68803_cov_4.393963:9912..10658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog246437.XP_006158465.1
Preferred nameSUMO3
PFAMsRad60-SLD
Max annot lvl33208|Metazoa
KEGG koko:K12160
KEGG Pathwayko03013,ko05418,map03013,map05418
KEGG ModuleM00427
GOsGO:0000003,GO:0000226,GO:0000228,GO:0000278,GO:0000775,GO:0000776,GO:0000777,GO:0000779,GO:0000780,GO:0000793,GO:0000794,GO:0000902,GO:0000904,GO:0000940,GO:0001932,GO:0001934,GO:0002064,GO:0002065,GO:0002066,GO:0002165,GO:0002376,GO:0002520,GO:0002682,GO:0002684,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006464,GO:0006508,GO:0006606,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007304,GO:0007306,GO:0007399,GO:0007409,GO:0007417,GO:0008104,GO:0008150,GO:0008152,GO:0009060,GO:0009653,GO:0009719,GO:0009790,GO:0009791,GO:0009792,GO:0009888,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0010927,GO:0015031,GO:0015833,GO:0015980,GO:0016043,GO:0016358,GO:0016604,GO:0016740,GO:0016925,GO:0016926,GO:0016999,GO:0017038,GO:0017144,GO:0018193,GO:0018205,GO:0019220,GO:0019222,GO:0019538,GO:0019752,GO:0019787,GO:0019789,GO:0019899,GO:0019953,GO:0021952,GO:0021953,GO:0021954,GO:0021955,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023056,GO:0030030,GO:0030097,GO:0030154,GO:0030162,GO:0030182,GO:0030496,GO:0030703,GO:0030707,GO:0030855,GO:0031175,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031347,GO:0031349,GO:0031386,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032880,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033301,GO:0033365,GO:0033674,GO:0034121,GO:0034123,GO:0034124,GO:0034126,GO:0034504,GO:0034613,GO:0035073,GO:0035186,GO:0035210,GO:0036211,GO:0042176,GO:0042221,GO:0042325,GO:0042327,GO:0042592,GO:0042886,GO:0043009,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043392,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043436,GO:0043549,GO:0044085,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044703,GO:0045088,GO:0045089,GO:0045184,GO:0045333,GO:0045448,GO:0045732,GO:0045859,GO:0045860,GO:0045862,GO:0045937,GO:0046578,GO:0046579,GO:0046843,GO:0046907,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048583,GO:0048584,GO:0048609,GO:0048646,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048813,GO:0048856,GO:0048858,GO:0048869,GO:0048878,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050794,GO:0050808,GO:0050896,GO:0051056,GO:0051057,GO:0051098,GO:0051100,GO:0051101,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051338,GO:0051347,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0055088,GO:0055114,GO:0060216,GO:0060255,GO:0060341,GO:0060429,GO:0060996,GO:0060997,GO:0061564,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070646,GO:0070647,GO:0070727,GO:0070848,GO:0070887,GO:0071310,GO:0071363,GO:0071495,GO:0071559,GO:0071560,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071900,GO:0071902,GO:0072350,GO:0072594,GO:0080090,GO:0080134,GO:0097061,GO:0098687,GO:0099173,GO:0106027,GO:0120036,GO:0120039,GO:0140096,GO:1901564,GO:1902531,GO:1902533,GO:1902850,GO:1903047,GO:1903050,GO:1903052,GO:1903076,GO:1903078,GO:1903362,GO:1903364,GO:1903827,GO:1903829,GO:1904375,GO:1904377,GO:1905475,GO:1905477,GO:2000058,GO:2000060
Evalue1.02e-05
EggNOG OGsCOG5227@1|root,KOG1769@2759|Eukaryota,3A3FU@33154|Opisthokonta,3BRHB@33208|Metazoa,3D850@33213|Bilateria,48F77@7711|Chordata,49C4C@7742|Vertebrata,3JHF3@40674|Mammalia
Descriptionprotein tag
COG categoryO
BRITEko00000,ko00001,ko00002,ko03019,ko03029,ko04121,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8750Gcaud8750Gracilaria caudata M_176_S67 malegeneNODE_40_length_68803_cov_4.393963 9912..10658 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8750.t1.stop1Gcaud8750.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_40_length_68803_cov_4.393963 9912..9914 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8750.t1.CDS1Gcaud8750.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_40_length_68803_cov_4.393963 9912..10658 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8750.t1.exon1Gcaud8750.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_40_length_68803_cov_4.393963 9912..10658 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8750.t1.start1Gcaud8750.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_40_length_68803_cov_4.393963 10656..10658 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8750.t1Gcaud8750.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_40_length_68803_cov_4.393963 9912..10658 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8750.t1 ID=Gcaud8750.t1|Name=Gcaud8750.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=249bp
MLDDPDSDTELLCHGGNSKIVSYYSELAKSGDVDDDDDEDDDDDNFDVMA
FTTRRKGKRPRGRPPKKESQPPQKKIATASKTAKTVFEISDDDEVVTVTE
RDRFDEEDLGARLAAERARSVLAESTRDNTDLEEAIRLQEEARLEREAEL
RRKQDAERKAQEKRQREKSKFEAIVFKARHGSQVMRVRMRTTDPLRRLLP
KFCRDFGLDSSKAYMEFDGEELGPNDTPQSVELEQDMIVDVFQRGSRK*
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spliced messenger RNA

>Gcaud8750.t1 ID=Gcaud8750.t1|Name=Gcaud8750.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=747bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:9912..10658- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGACGACCCAGACTCTGACACGGAGTTGTTATGTCACGGTGGCAA
TTCTAAAATCGTTTCATACTACAGCGAGCTCGCGAAGAGCGGAGACGTGG
ACGACGACGACGACGAAGACGATGATGATGATAACTTCGACGTCATGGCC
TTCACCACCAGACGCAAGGGAAAGCGTCCAAGAGGGCGTCCGCCAAAGAA
AGAATCGCAACCTCCTCAAAAGAAGATTGCCACTGCATCTAAGACGGCAA
AGACCGTCTTCGAGATTTCCGACGACGACGAAGTTGTGACAGTCACTGAA
CGCGACAGATTCGATGAAGAGGATTTAGGAGCGAGGCTTGCTGCGGAACG
GGCGAGAAGCGTACTTGCGGAGTCTACCAGGGATAACACCGATTTGGAGG
AGGCTATTCGTCTTCAAGAAGAAGCTCGTCTTGAGCGAGAAGCGGAACTC
AGACGTAAACAAGATGCTGAACGAAAAGCTCAAGAGAAACGACAACGTGA
GAAAAGCAAATTCGAGGCGATTGTATTCAAGGCTCGCCACGGTAGTCAAG
TGATGAGGGTCAGAATGCGGACCACTGACCCTCTGCGGAGGCTGTTGCCA
AAGTTCTGCCGTGACTTTGGGCTGGACTCGAGTAAAGCTTACATGGAATT
TGATGGTGAAGAACTGGGTCCGAACGACACGCCGCAAAGTGTAGAACTCG
AACAAGATATGATTGTCGACGTATTCCAACGAGGTTCCAGGAAATAG
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protein sequence of Gcaud8750.t1

>Gcaud8750.t1 ID=Gcaud8750.t1|Name=Gcaud8750.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=249bp
MLDDPDSDTELLCHGGNSKIVSYYSELAKSGDVDDDDDEDDDDDNFDVMA
FTTRRKGKRPRGRPPKKESQPPQKKIATASKTAKTVFEISDDDEVVTVTE
RDRFDEEDLGARLAAERARSVLAESTRDNTDLEEAIRLQEEARLEREAEL
RRKQDAERKAQEKRQREKSKFEAIVFKARHGSQVMRVRMRTTDPLRRLLP
KFCRDFGLDSSKAYMEFDGEELGPNDTPQSVELEQDMIVDVFQRGSRK*
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mRNA from alignment at NODE_40_length_68803_cov_4.393963:9912..10658-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8750.t1 ID=Gcaud8750.t1|Name=Gcaud8750.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=747bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:9912..10658- (Gracilaria caudata M_176_S67 male)
ATGCTCGACGACCCAGACTCTGACACGGAGTTGTTATGTCACGGTGGCAA
TTCTAAAATCGTTTCATACTACAGCGAGCTCGCGAAGAGCGGAGACGTGG
ACGACGACGACGACGAAGACGATGATGATGATAACTTCGACGTCATGGCC
TTCACCACCAGACGCAAGGGAAAGCGTCCAAGAGGGCGTCCGCCAAAGAA
AGAATCGCAACCTCCTCAAAAGAAGATTGCCACTGCATCTAAGACGGCAA
AGACCGTCTTCGAGATTTCCGACGACGACGAAGTTGTGACAGTCACTGAA
CGCGACAGATTCGATGAAGAGGATTTAGGAGCGAGGCTTGCTGCGGAACG
GGCGAGAAGCGTACTTGCGGAGTCTACCAGGGATAACACCGATTTGGAGG
AGGCTATTCGTCTTCAAGAAGAAGCTCGTCTTGAGCGAGAAGCGGAACTC
AGACGTAAACAAGATGCTGAACGAAAAGCTCAAGAGAAACGACAACGTGA
GAAAAGCAAATTCGAGGCGATTGTATTCAAGGCTCGCCACGGTAGTCAAG
TGATGAGGGTCAGAATGCGGACCACTGACCCTCTGCGGAGGCTGTTGCCA
AAGTTCTGCCGTGACTTTGGGCTGGACTCGAGTAAAGCTTACATGGAATT
TGATGGTGAAGAACTGGGTCCGAACGACACGCCGCAAAGTGTAGAACTCG
AACAAGATATGATTGTCGACGTATTCCAACGAGGTTCCAGGAAATAG
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Coding sequence (CDS) from alignment at NODE_40_length_68803_cov_4.393963:9912..10658-

>Gcaud8750.t1 ID=Gcaud8750.t1|Name=Gcaud8750.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=747bp|location=Sequence derived from alignment at NODE_40_length_68803_cov_4.393963:9912..10658- (Gracilaria caudata M_176_S67 male)
ATGCTCGACGACCCAGACTCTGACACGGAGTTGTTATGTCACGGTGGCAA
TTCTAAAATCGTTTCATACTACAGCGAGCTCGCGAAGAGCGGAGACGTGG
ACGACGACGACGACGAAGACGATGATGATGATAACTTCGACGTCATGGCC
TTCACCACCAGACGCAAGGGAAAGCGTCCAAGAGGGCGTCCGCCAAAGAA
AGAATCGCAACCTCCTCAAAAGAAGATTGCCACTGCATCTAAGACGGCAA
AGACCGTCTTCGAGATTTCCGACGACGACGAAGTTGTGACAGTCACTGAA
CGCGACAGATTCGATGAAGAGGATTTAGGAGCGAGGCTTGCTGCGGAACG
GGCGAGAAGCGTACTTGCGGAGTCTACCAGGGATAACACCGATTTGGAGG
AGGCTATTCGTCTTCAAGAAGAAGCTCGTCTTGAGCGAGAAGCGGAACTC
AGACGTAAACAAGATGCTGAACGAAAAGCTCAAGAGAAACGACAACGTGA
GAAAAGCAAATTCGAGGCGATTGTATTCAAGGCTCGCCACGGTAGTCAAG
TGATGAGGGTCAGAATGCGGACCACTGACCCTCTGCGGAGGCTGTTGCCA
AAGTTCTGCCGTGACTTTGGGCTGGACTCGAGTAAAGCTTACATGGAATT
TGATGGTGAAGAACTGGGTCCGAACGACACGCCGCAAAGTGTAGAACTCG
AACAAGATATGATTGTCGACGTATTCCAACGAGGTTCCAGGAAATAG
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