Gcaud8745.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8745.t1
Unique NameGcaud8745.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length198
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_9638_length_608_cov_4.920696contigNODE_9638_length_608_cov_4.920696:2..593 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8745Gcaud8745Gracilaria caudata M_176_S67 malegeneNODE_9638_length_608_cov_4.920696 2..593 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8745.t1.CDS1Gcaud8745.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_9638_length_608_cov_4.920696 2..593 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8745.t1.exon1Gcaud8745.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_9638_length_608_cov_4.920696 2..593 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8745.t1.start1Gcaud8745.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_9638_length_608_cov_4.920696 591..593 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8745.t1Gcaud8745.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_9638_length_608_cov_4.920696 2..593 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8745.t1 ID=Gcaud8745.t1|Name=Gcaud8745.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=198bp
MLRPLIEPEKPIDLEQKAISKLKEYFGDHGSEKPFSFYEAAKMLKMEQTK
LLESIRKGSTITEDGDLLIGREARELLDPCRSRSDQGQEQRVNIQERESL
PPTTPSEPEVRSKSRSTLATRRCPLCDQPIPKALFDEHLRNCLEESNISS
ALMDRENEDEKISVYGKDRRRMKGRESKTFTGPSNRKGGGGAGVPASX
back to top

spliced messenger RNA

>Gcaud8745.t1 ID=Gcaud8745.t1|Name=Gcaud8745.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=592bp|location=Sequence derived from alignment at NODE_9638_length_608_cov_4.920696:2..593- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGAGACCACTTATTGAACCCGAGAAACCTATCGATTTAGAGCAGAA
AGCCATCTCGAAACTCAAGGAGTATTTTGGCGATCACGGCAGCGAGAAAC
CTTTCTCTTTCTATGAAGCTGCTAAGATGCTTAAGATGGAACAAACAAAA
TTACTTGAATCAATTCGGAAGGGTTCCACAATTACGGAAGATGGAGACCT
ATTGATAGGCCGTGAAGCACGGGAATTACTTGATCCGTGTCGGTCTAGGA
GCGATCAAGGACAAGAACAGCGTGTTAACATACAAGAAAGGGAGTCGCTA
CCACCGACGACTCCATCCGAACCAGAAGTCCGTTCGAAATCTAGGTCTAC
ACTCGCCACGAGGAGATGTCCTTTGTGTGACCAACCAATCCCTAAAGCAC
TGTTTGATGAACACCTTCGCAATTGCTTGGAGGAGTCAAACATATCCTCT
GCGTTAATGGATAGAGAGAACGAAGACGAAAAGATATCAGTGTATGGTAA
AGATCGTAGGCGAATGAAGGGACGGGAATCGAAAACTTTTACAGGTCCTA
GTAATAGAAAAGGTGGTGGAGGAGCAGGTGTACCTGCCAGTC
back to top

protein sequence of Gcaud8745.t1

>Gcaud8745.t1 ID=Gcaud8745.t1|Name=Gcaud8745.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=198bp
MLRPLIEPEKPIDLEQKAISKLKEYFGDHGSEKPFSFYEAAKMLKMEQTK
LLESIRKGSTITEDGDLLIGREARELLDPCRSRSDQGQEQRVNIQERESL
PPTTPSEPEVRSKSRSTLATRRCPLCDQPIPKALFDEHLRNCLEESNISS
ALMDRENEDEKISVYGKDRRRMKGRESKTFTGPSNRKGGGGAGVPASX
back to top

mRNA from alignment at NODE_9638_length_608_cov_4.920696:2..593-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8745.t1 ID=Gcaud8745.t1|Name=Gcaud8745.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=592bp|location=Sequence derived from alignment at NODE_9638_length_608_cov_4.920696:2..593- (Gracilaria caudata M_176_S67 male)
ATGCTGAGACCACTTATTGAACCCGAGAAACCTATCGATTTAGAGCAGAA
AGCCATCTCGAAACTCAAGGAGTATTTTGGCGATCACGGCAGCGAGAAAC
CTTTCTCTTTCTATGAAGCTGCTAAGATGCTTAAGATGGAACAAACAAAA
TTACTTGAATCAATTCGGAAGGGTTCCACAATTACGGAAGATGGAGACCT
ATTGATAGGCCGTGAAGCACGGGAATTACTTGATCCGTGTCGGTCTAGGA
GCGATCAAGGACAAGAACAGCGTGTTAACATACAAGAAAGGGAGTCGCTA
CCACCGACGACTCCATCCGAACCAGAAGTCCGTTCGAAATCTAGGTCTAC
ACTCGCCACGAGGAGATGTCCTTTGTGTGACCAACCAATCCCTAAAGCAC
TGTTTGATGAACACCTTCGCAATTGCTTGGAGGAGTCAAACATATCCTCT
GCGTTAATGGATAGAGAGAACGAAGACGAAAAGATATCAGTGTATGGTAA
AGATCGTAGGCGAATGAAGGGACGGGAATCGAAAACTTTTACAGGTCCTA
GTAATAGAAAAGGTGGTGGAGGAGCAGGTGTACCTGCCAGTC
back to top

Coding sequence (CDS) from alignment at NODE_9638_length_608_cov_4.920696:2..593-

>Gcaud8745.t1 ID=Gcaud8745.t1|Name=Gcaud8745.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=592bp|location=Sequence derived from alignment at NODE_9638_length_608_cov_4.920696:2..593- (Gracilaria caudata M_176_S67 male)
ATGCTGAGACCACTTATTGAACCCGAGAAACCTATCGATTTAGAGCAGAA
AGCCATCTCGAAACTCAAGGAGTATTTTGGCGATCACGGCAGCGAGAAAC
CTTTCTCTTTCTATGAAGCTGCTAAGATGCTTAAGATGGAACAAACAAAA
TTACTTGAATCAATTCGGAAGGGTTCCACAATTACGGAAGATGGAGACCT
ATTGATAGGCCGTGAAGCACGGGAATTACTTGATCCGTGTCGGTCTAGGA
GCGATCAAGGACAAGAACAGCGTGTTAACATACAAGAAAGGGAGTCGCTA
CCACCGACGACTCCATCCGAACCAGAAGTCCGTTCGAAATCTAGGTCTAC
ACTCGCCACGAGGAGATGTCCTTTGTGTGACCAACCAATCCCTAAAGCAC
TGTTTGATGAACACCTTCGCAATTGCTTGGAGGAGTCAAACATATCCTCT
GCGTTAATGGATAGAGAGAACGAAGACGAAAAGATATCAGTGTATGGTAA
AGATCGTAGGCGAATGAAGGGACGGGAATCGAAAACTTTTACAGGTCCTA
GTAATAGAAAAGGTGGTGGAGGAGCAGGTGTACCTGCCAGTC
back to top