Gcaud8737.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8737.t1
Unique NameGcaud8737.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length313
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_122_length_46896_cov_4.534024contigNODE_122_length_46896_cov_4.534024:1727..2868 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8737Gcaud8737Gracilaria caudata M_176_S67 malegeneNODE_122_length_46896_cov_4.534024 1727..2868 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8737.t1Gcaud8737.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_122_length_46896_cov_4.534024 1727..2868 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8737.t1.stop1Gcaud8737.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_122_length_46896_cov_4.534024 1727..1729 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8737.t1.CDS1Gcaud8737.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_122_length_46896_cov_4.534024 1727..1848 -
Gcaud8737.t1.CDS2Gcaud8737.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_122_length_46896_cov_4.534024 2052..2868 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8737.t1.exon1Gcaud8737.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_122_length_46896_cov_4.534024 1727..1848 -
Gcaud8737.t1.exon2Gcaud8737.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_122_length_46896_cov_4.534024 2052..2868 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8737.t1.intron1Gcaud8737.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_122_length_46896_cov_4.534024 1849..2051 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8737.t1.start1Gcaud8737.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_122_length_46896_cov_4.534024 2866..2868 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8737.t1 ID=Gcaud8737.t1|Name=Gcaud8737.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=313bp
MSVRKRGLSPFSSDSFDDYFVASRLKNEVNSVSQQRESSFDLGAMHGTAT
DYSPMVVCPSPVGAEQGLQGEQDLHPTERAVRRQHDHEAGSSDLDDIQAH
VASLQLRGTCESVMTDIQIDASQHREQQQHITFFEDSDIEGQPCADGDTL
NSAPSQCGDITLRSESVQNSCLACDIRDVFTALGFFEDENPGFVKSVIII
APVLNWMILKPQMAMVLTARNTLVEMCELKVFYTDGDDDRYHVSIEDEFH
HCVFDYYDDFFEASDAAADDDCYVYNGCNDYDYGDHNYNEYHDFDNGHDY
SDDYIDDLEDDY*
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spliced messenger RNA

>Gcaud8737.t1 ID=Gcaud8737.t1|Name=Gcaud8737.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=939bp|location=Sequence derived from alignment at NODE_122_length_46896_cov_4.534024:1727..2868- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGTGCGTAAACGGGGGTTGAGTCCCTTTTCTTCTGACAGTTTTGA
CGATTACTTTGTCGCTTCTAGGTTGAAGAATGAAGTGAATAGTGTTTCGC
AGCAGCGTGAGAGTTCTTTTGACTTGGGCGCTATGCATGGAACTGCCACT
GATTATTCGCCGATGGTTGTGTGTCCCTCGCCGGTAGGTGCTGAGCAGGG
TCTCCAAGGCGAACAAGACCTTCATCCTACCGAGCGTGCGGTGCGCAGAC
AGCACGACCATGAGGCTGGCTCAAGCGACTTGGATGACATTCAGGCCCAT
GTTGCTTCTCTTCAACTGCGTGGTACATGTGAATCAGTGATGACAGATAT
CCAGATTGATGCCAGTCAGCACAGAGAGCAACAGCAGCACATTACTTTTT
TTGAGGATTCTGACATTGAAGGTCAACCTTGTGCAGATGGCGACACATTG
AACTCCGCTCCTTCTCAGTGTGGCGACATAACCCTACGGTCTGAATCAGT
TCAAAATTCTTGTCTAGCTTGTGATATACGTGACGTTTTTACTGCCTTGG
GCTTCTTTGAGGACGAGAATCCCGGCTTCGTGAAGAGTGTGATCATTATT
GCCCCTGTCCTAAACTGGATGATACTGAAACCGCAAATGGCAATGGTTTT
GACCGCGAGGAATACCTTAGTGGAGATGTGTGAATTGAAAGTCTTTTACA
CTGACGGTGATGATGACAGGTATCATGTCAGTATTGAAGATGAATTTCAT
CATTGCGTTTTTGATTACTATGATGACTTTTTTGAAGCCTCTGATGCGGC
CGCCGATGATGACTGTTATGTATACAATGGTTGTAACGACTACGACTACG
GTGACCATAACTATAACGAGTATCATGACTTTGACAACGGCCATGATTAC
AGCGATGACTACATCGATGATCTCGAAGATGATTACTGA
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protein sequence of Gcaud8737.t1

>Gcaud8737.t1 ID=Gcaud8737.t1|Name=Gcaud8737.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=313bp
MSVRKRGLSPFSSDSFDDYFVASRLKNEVNSVSQQRESSFDLGAMHGTAT
DYSPMVVCPSPVGAEQGLQGEQDLHPTERAVRRQHDHEAGSSDLDDIQAH
VASLQLRGTCESVMTDIQIDASQHREQQQHITFFEDSDIEGQPCADGDTL
NSAPSQCGDITLRSESVQNSCLACDIRDVFTALGFFEDENPGFVKSVIII
APVLNWMILKPQMAMVLTARNTLVEMCELKVFYTDGDDDRYHVSIEDEFH
HCVFDYYDDFFEASDAAADDDCYVYNGCNDYDYGDHNYNEYHDFDNGHDY
SDDYIDDLEDDY*
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mRNA from alignment at NODE_122_length_46896_cov_4.534024:1727..2868-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8737.t1 ID=Gcaud8737.t1|Name=Gcaud8737.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1142bp|location=Sequence derived from alignment at NODE_122_length_46896_cov_4.534024:1727..2868- (Gracilaria caudata M_176_S67 male)
ATGTCTGTGCGTAAACGGGGGTTGAGTCCCTTTTCTTCTGACAGTTTTGA
CGATTACTTTGTCGCTTCTAGGTTGAAGAATGAAGTGAATAGTGTTTCGC
AGCAGCGTGAGAGTTCTTTTGACTTGGGCGCTATGCATGGAACTGCCACT
GATTATTCGCCGATGGTTGTGTGTCCCTCGCCGGTAGGTGCTGAGCAGGG
TCTCCAAGGCGAACAAGACCTTCATCCTACCGAGCGTGCGGTGCGCAGAC
AGCACGACCATGAGGCTGGCTCAAGCGACTTGGATGACATTCAGGCCCAT
GTTGCTTCTCTTCAACTGCGTGGTACATGTGAATCAGTGATGACAGATAT
CCAGATTGATGCCAGTCAGCACAGAGAGCAACAGCAGCACATTACTTTTT
TTGAGGATTCTGACATTGAAGGTCAACCTTGTGCAGATGGCGACACATTG
AACTCCGCTCCTTCTCAGTGTGGCGACATAACCCTACGGTCTGAATCAGT
TCAAAATTCTTGTCTAGCTTGTGATATACGTGACGTTTTTACTGCCTTGG
GCTTCTTTGAGGACGAGAATCCCGGCTTCGTGAAGAGTGTGATCATTATT
GCCCCTGTCCTAAACTGGATGATACTGAAACCGCAAATGGCAATGGTTTT
GACCGCGAGGAATACCTTAGTGGAGATGTGTGAATTGAAAGTCTTTTACA
CTGACGGTGATGATGACAGGTATCATGTCAGTATTGAAGATGAATTTCAT
CATTGCGTTTTTGATTACTATGATGACTTTTTTGAAGCCTCTGATGCGGC
CGCCGATGATGACTGTTGTAAGAGAACACAGTATAGACTGTAGCGTTCTG
TAGTACGACGCAAGATGGCGGCCGGAGACAAAGGTCTGGCAACACCTGTA
GTGCTTGACGCAGACAGATACCTGGCCTCAATTTTTATGTTCTATTGTAA
AAACGATCCGACGTGGAGCTACCATATGAGAGACAGGCGCTATTACTGAT
TTGTAACAACTGTGATGTAGATGTATACAATGGTTGTAACGACTACGACT
ACGGTGACCATAACTATAACGAGTATCATGACTTTGACAACGGCCATGAT
TACAGCGATGACTACATCGATGATCTCGAAGATGATTACTGA
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Coding sequence (CDS) from alignment at NODE_122_length_46896_cov_4.534024:1727..2868-

>Gcaud8737.t1 ID=Gcaud8737.t1|Name=Gcaud8737.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=939bp|location=Sequence derived from alignment at NODE_122_length_46896_cov_4.534024:1727..2868- (Gracilaria caudata M_176_S67 male)
ATGTCTGTGCGTAAACGGGGGTTGAGTCCCTTTTCTTCTGACAGTTTTGA
CGATTACTTTGTCGCTTCTAGGTTGAAGAATGAAGTGAATAGTGTTTCGC
AGCAGCGTGAGAGTTCTTTTGACTTGGGCGCTATGCATGGAACTGCCACT
GATTATTCGCCGATGGTTGTGTGTCCCTCGCCGGTAGGTGCTGAGCAGGG
TCTCCAAGGCGAACAAGACCTTCATCCTACCGAGCGTGCGGTGCGCAGAC
AGCACGACCATGAGGCTGGCTCAAGCGACTTGGATGACATTCAGGCCCAT
GTTGCTTCTCTTCAACTGCGTGGTACATGTGAATCAGTGATGACAGATAT
CCAGATTGATGCCAGTCAGCACAGAGAGCAACAGCAGCACATTACTTTTT
TTGAGGATTCTGACATTGAAGGTCAACCTTGTGCAGATGGCGACACATTG
AACTCCGCTCCTTCTCAGTGTGGCGACATAACCCTACGGTCTGAATCAGT
TCAAAATTCTTGTCTAGCTTGTGATATACGTGACGTTTTTACTGCCTTGG
GCTTCTTTGAGGACGAGAATCCCGGCTTCGTGAAGAGTGTGATCATTATT
GCCCCTGTCCTAAACTGGATGATACTGAAACCGCAAATGGCAATGGTTTT
GACCGCGAGGAATACCTTAGTGGAGATGTGTGAATTGAAAGTCTTTTACA
CTGACGGTGATGATGACAGGTATCATGTCAGTATTGAAGATGAATTTCAT
CATTGCGTTTTTGATTACTATGATGACTTTTTTGAAGCCTCTGATGCGGC
CGCCGATGATGACTGTTATGTATACAATGGTTGTAACGACTACGACTACG
GTGACCATAACTATAACGAGTATCATGACTTTGACAACGGCCATGATTAC
AGCGATGACTACATCGATGATCTCGAAGATGATTACTGA
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