Gcaud8735.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8735.t1
Unique Name	Gcaud8735.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	576

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1598_length_9575_cov_4.429249	contig	NODE_1598_length_9575_cov_4.429249:4650..6566 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	144197.XP_008292445.1
PFAMs	AIG1
Max annot lvl	33208\|Metazoa
Evalue	0.000515
EggNOG OGs	290TZ@1\|root,2RPMZ@2759\|Eukaryota,39YHN@33154\|Opisthokonta,3BMJT@33208\|Metazoa,3CVSM@33213\|Bilateria,48DH8@7711\|Chordata,49AJM@7742\|Vertebrata,49ZH3@7898\|Actinopterygii
Description	GTPase IMAP family member
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8735	Gcaud8735	Gracilaria caudata M_176_S67 male	gene	NODE_1598_length_9575_cov_4.429249 4650..6566 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8735.t1	Gcaud8735.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1598_length_9575_cov_4.429249 4650..6566 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8735.t1.start1	Gcaud8735.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1598_length_9575_cov_4.429249 4650..4652 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8735.t1.CDS1	Gcaud8735.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1598_length_9575_cov_4.429249 4650..4714 +
Gcaud8735.t1.CDS2	Gcaud8735.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1598_length_9575_cov_4.429249 4768..4789 +
Gcaud8735.t1.CDS3	Gcaud8735.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_1598_length_9575_cov_4.429249 4926..6566 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8735.t1.exon1	Gcaud8735.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1598_length_9575_cov_4.429249 4650..4714 +
Gcaud8735.t1.exon2	Gcaud8735.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1598_length_9575_cov_4.429249 4768..4789 +
Gcaud8735.t1.exon3	Gcaud8735.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_1598_length_9575_cov_4.429249 4926..6566 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8735.t1.intron1	Gcaud8735.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1598_length_9575_cov_4.429249 4715..4767 +
Gcaud8735.t1.intron2	Gcaud8735.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_1598_length_9575_cov_4.429249 4790..4925 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8735.t1.stop1	Gcaud8735.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1598_length_9575_cov_4.429249 6564..6566 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1598_length_9575_cov_4.429249:4650..6566+
coding sequence from alignment at NODE_1598_length_9575_cov_4.429249:4650..6566+

mRNA sequence

>Gcaud8735.t1 ID=Gcaud8735.t1|Name=Gcaud8735.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=576bp
MSFLLDPIGFVADVIAISNALGTKSSTAKTKAANVVFGVLVKYNCSSKEA
VLGFAAASADRIEDVIAKIDDFNRKARAVFAPKSTYVLLRIRGKYDPAIE
EFSFATLLNILTFVCSMEGDVHLASAHTSSLQALKEDRTTLLLEAEQGIP
ERLDWDKKRRVFLLGKTRSGKSTLGNALTRGRSFTVSQATTGTMRVEKCE
RLDVEGSTRWITEVYDTPGLFDRDDLDIFYKADIEDHVRALQRASTLIMT
IKVDEGIDSAVWDSLQTYRELFGGSMFSMLALVLTINEPGSAKKLDETVE
RHWPTITGVNKDILKENMFAVSLQDLRTLEESRSHEVVEQLAKLCRQNSM
KPLGAFVEHFNKIRTALSSQAGGVSQRYQELLNSGWSAYEELTSQYEGSG
YVRMKCSGPNSFNGFIMKGKMSTRGEKKSLLAKLIPSRGRTVLAVKTDLT
VSYGEWSGFAKEHKNEENRSDLMWKFGERLYRNGFGVIVRRGGCQRRLGF
SVEHHEVHIFQPSEKAQQEVNRALYSLTNECPEELSAGAIADIADEALPL
ALHFREKIRRERFHRVPRNSSSSSG*

spliced messenger RNA

>Gcaud8735.t1 ID=Gcaud8735.t1|Name=Gcaud8735.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1728bp|location=Sequence derived from alignment at NODE_1598_length_9575_cov_4.429249:4650..6566+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTTTCTTCTCGACCCAATTGGTTTTGTGGCTGACGTGATTGCGAT
TTCTAATGCCCTAGGAACAAAATCGTCAACTGCAAAGACCAAAGCCGCAA
ATGTTGTGTTTGGGGTTCTTGTCAAGTATAATTGTTCCTCCAAAGAAGCA
GTGCTGGGGTTTGCTGCAGCTTCTGCAGATCGAATTGAAGATGTCATAGC
AAAGATTGATGACTTTAATCGGAAGGCAAGAGCAGTTTTTGCGCCAAAGT
CTACATATGTATTGTTACGAATTCGAGGCAAGTACGATCCCGCCATCGAA
GAGTTTTCATTTGCGACTCTGTTGAACATCTTGACATTTGTTTGTTCTAT
GGAAGGCGATGTTCATCTAGCAAGTGCCCACACAAGTTCCCTGCAAGCCC
TCAAAGAAGACAGAACGACGCTGCTTCTTGAAGCTGAACAAGGCATACCT
GAACGACTGGACTGGGATAAAAAACGTAGAGTTTTTCTGTTGGGAAAAAC
TAGAAGTGGAAAGTCAACCTTAGGAAACGCTTTAACCAGGGGAAGGAGCT
TCACAGTTTCGCAGGCCACAACCGGGACAATGAGAGTGGAAAAATGCGAG
CGGTTAGACGTGGAAGGCAGCACTCGATGGATCACTGAAGTCTATGACAC
TCCGGGGCTTTTTGACCGAGATGATTTGGATATCTTTTACAAAgcagaca
ttgaagatcacgtacgagctttgcaaagagctagcacTTTGATCATGACT
ATCAAAGTCGATGAAGGAATTGATTCAGCTGTCTGGGATTCTCTGCAGAC
GTACAGAGAATTGTTTGGTGGTTCCATGTTTTCCATGTTGGCTCTAGTTC
TCACCATAAATGAACCTGGGAGTGCCAAAAAGCTGGATGAGACTGTTGAG
CGTCATTGGCCGACTATCACTGGAGTGAACAAAGATATTTTGAAAGAAAA
CATGTTTGCAGTTAGCCTGCAGGACCTTCGAACACTCGAAGAATCTCGTT
CGCATGAAGTAGTGGAACAACTCGCAAAGCTGTGTCGTCAGAATTCGATG
AAGCCGCTAGGAGCGTTCGTGGAGCATTTCAACAAAATCAGGACGGCTCT
GAGTTCTCAGGCCGGGGGCGTGAGCCAACGTTACCAGGAGCTGCTTAACT
CGGGATGGAGTGCGTATGAAGAGCTTACAAGCCAGTACGAGGGTAGCGGG
TATGTTCGCATGAAATGTTCCGGACCAAATTCATTCAACGGCTTCATCAT
GAAAGGGAAAATGTCTACCAGGGGAGAAAAGAAAAGTCTTCTTGCAAAAT
TGATACCAAGCAGGGGAAGAACCGTATTAGCTGTAAAGACAGATTTGACA
GTATCATATGGGGAATGGAGCGGGTTTGCCAAAGAGCACAAGAATGAAGA
GAATCGAAGCGACCTGATGTGGAAGTTCGGAGAAAGACTGTATCGAAATG
GGTTTGGTGTCATAGTCCGTCGTGGTGGGTGTCAGCGGCGCCTCGGGTTT
AGTGTAGAACATCATGAAGTTCACATCTTTCAGCCGAGCGAAAAGGCGCA
GCAAGAAGTTAACAGGGCGCTCTACTCGCTCACAAACGAATGTCCGGAGG
AGCTGAGTGCCGGGGCAATTGCCGATATAGCCGATGAAGCACTTCCGCTC
GCGTTACACTTCCGCGAAAAAATCAGGAGGGAACGGTTCCATCGAGTTCC
TCGGAATAGTTCTTCGAGTTCAGGATAA

protein sequence of Gcaud8735.t1

>Gcaud8735.t1 ID=Gcaud8735.t1|Name=Gcaud8735.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=576bp
MSFLLDPIGFVADVIAISNALGTKSSTAKTKAANVVFGVLVKYNCSSKEA
VLGFAAASADRIEDVIAKIDDFNRKARAVFAPKSTYVLLRIRGKYDPAIE
EFSFATLLNILTFVCSMEGDVHLASAHTSSLQALKEDRTTLLLEAEQGIP
ERLDWDKKRRVFLLGKTRSGKSTLGNALTRGRSFTVSQATTGTMRVEKCE
RLDVEGSTRWITEVYDTPGLFDRDDLDIFYKADIEDHVRALQRASTLIMT
IKVDEGIDSAVWDSLQTYRELFGGSMFSMLALVLTINEPGSAKKLDETVE
RHWPTITGVNKDILKENMFAVSLQDLRTLEESRSHEVVEQLAKLCRQNSM
KPLGAFVEHFNKIRTALSSQAGGVSQRYQELLNSGWSAYEELTSQYEGSG
YVRMKCSGPNSFNGFIMKGKMSTRGEKKSLLAKLIPSRGRTVLAVKTDLT
VSYGEWSGFAKEHKNEENRSDLMWKFGERLYRNGFGVIVRRGGCQRRLGF
SVEHHEVHIFQPSEKAQQEVNRALYSLTNECPEELSAGAIADIADEALPL
ALHFREKIRRERFHRVPRNSSSSSG*

mRNA from alignment at NODE_1598_length_9575_cov_4.429249:4650..6566+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8735.t1 ID=Gcaud8735.t1|Name=Gcaud8735.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1917bp|location=Sequence derived from alignment at NODE_1598_length_9575_cov_4.429249:4650..6566+ (Gracilaria caudata M_176_S67 male)
ATGTCGTTTCTTCTCGACCCAATTGGTTTTGTGGCTGACGTGATTGCGAT
TTCTAATGCCCTAGGGTATAACACACCGTTTCAGGAGAACCTGCGACGAC
AATTGTGCAAAACCGAAGAACAAAATCGTCAACTGCAAAGGTATGTGCAA
CAAAGTGTAAGTGAACTCAAGAACATGCTTGCAACTCAAGTAGTTATTAG
TATTCAACCGCGAGTGGAGACTGAACTACCGCCTGATCGACTCGAGTCTC
TCATCAAATTGCTGTTCTATTTGAAGACCAAAGCCGCAAATGTTGTGTTT
GGGGTTCTTGTCAAGTATAATTGTTCCTCCAAAGAAGCAGTGCTGGGGTT
TGCTGCAGCTTCTGCAGATCGAATTGAAGATGTCATAGCAAAGATTGATG
ACTTTAATCGGAAGGCAAGAGCAGTTTTTGCGCCAAAGTCTACATATGTA
TTGTTACGAATTCGAGGCAAGTACGATCCCGCCATCGAAGAGTTTTCATT
TGCGACTCTGTTGAACATCTTGACATTTGTTTGTTCTATGGAAGGCGATG
TTCATCTAGCAAGTGCCCACACAAGTTCCCTGCAAGCCCTCAAAGAAGAC
AGAACGACGCTGCTTCTTGAAGCTGAACAAGGCATACCTGAACGACTGGA
CTGGGATAAAAAACGTAGAGTTTTTCTGTTGGGAAAAACTAGAAGTGGAA
AGTCAACCTTAGGAAACGCTTTAACCAGGGGAAGGAGCTTCACAGTTTCG
CAGGCCACAACCGGGACAATGAGAGTGGAAAAATGCGAGCGGTTAGACGT
GGAAGGCAGCACTCGATGGATCACTGAAGTCTATGACACTCCGGGGCTTT
TTGACCGAGATGATTTGGATATCTTTTACAAAgcagacattgaagatcac
gtacgagctttgcaaagagctagcacTTTGATCATGACTATCAAAGTCGA
TGAAGGAATTGATTCAGCTGTCTGGGATTCTCTGCAGACGTACAGAGAAT
TGTTTGGTGGTTCCATGTTTTCCATGTTGGCTCTAGTTCTCACCATAAAT
GAACCTGGGAGTGCCAAAAAGCTGGATGAGACTGTTGAGCGTCATTGGCC
GACTATCACTGGAGTGAACAAAGATATTTTGAAAGAAAACATGTTTGCAG
TTAGCCTGCAGGACCTTCGAACACTCGAAGAATCTCGTTCGCATGAAGTA
GTGGAACAACTCGCAAAGCTGTGTCGTCAGAATTCGATGAAGCCGCTAGG
AGCGTTCGTGGAGCATTTCAACAAAATCAGGACGGCTCTGAGTTCTCAGG
CCGGGGGCGTGAGCCAACGTTACCAGGAGCTGCTTAACTCGGGATGGAGT
GCGTATGAAGAGCTTACAAGCCAGTACGAGGGTAGCGGGTATGTTCGCAT
GAAATGTTCCGGACCAAATTCATTCAACGGCTTCATCATGAAAGGGAAAA
TGTCTACCAGGGGAGAAAAGAAAAGTCTTCTTGCAAAATTGATACCAAGC
AGGGGAAGAACCGTATTAGCTGTAAAGACAGATTTGACAGTATCATATGG
GGAATGGAGCGGGTTTGCCAAAGAGCACAAGAATGAAGAGAATCGAAGCG
ACCTGATGTGGAAGTTCGGAGAAAGACTGTATCGAAATGGGTTTGGTGTC
ATAGTCCGTCGTGGTGGGTGTCAGCGGCGCCTCGGGTTTAGTGTAGAACA
TCATGAAGTTCACATCTTTCAGCCGAGCGAAAAGGCGCAGCAAGAAGTTA
ACAGGGCGCTCTACTCGCTCACAAACGAATGTCCGGAGGAGCTGAGTGCC
GGGGCAATTGCCGATATAGCCGATGAAGCACTTCCGCTCGCGTTACACTT
CCGCGAAAAAATCAGGAGGGAACGGTTCCATCGAGTTCCTCGGAATAGTT
CTTCGAGTTCAGGATAA

Coding sequence (CDS) from alignment at NODE_1598_length_9575_cov_4.429249:4650..6566+

>Gcaud8735.t1 ID=Gcaud8735.t1|Name=Gcaud8735.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1728bp|location=Sequence derived from alignment at NODE_1598_length_9575_cov_4.429249:4650..6566+ (Gracilaria caudata M_176_S67 male)
ATGTCGTTTCTTCTCGACCCAATTGGTTTTGTGGCTGACGTGATTGCGAT
TTCTAATGCCCTAGGAACAAAATCGTCAACTGCAAAGACCAAAGCCGCAA
ATGTTGTGTTTGGGGTTCTTGTCAAGTATAATTGTTCCTCCAAAGAAGCA
GTGCTGGGGTTTGCTGCAGCTTCTGCAGATCGAATTGAAGATGTCATAGC
AAAGATTGATGACTTTAATCGGAAGGCAAGAGCAGTTTTTGCGCCAAAGT
CTACATATGTATTGTTACGAATTCGAGGCAAGTACGATCCCGCCATCGAA
GAGTTTTCATTTGCGACTCTGTTGAACATCTTGACATTTGTTTGTTCTAT
GGAAGGCGATGTTCATCTAGCAAGTGCCCACACAAGTTCCCTGCAAGCCC
TCAAAGAAGACAGAACGACGCTGCTTCTTGAAGCTGAACAAGGCATACCT
GAACGACTGGACTGGGATAAAAAACGTAGAGTTTTTCTGTTGGGAAAAAC
TAGAAGTGGAAAGTCAACCTTAGGAAACGCTTTAACCAGGGGAAGGAGCT
TCACAGTTTCGCAGGCCACAACCGGGACAATGAGAGTGGAAAAATGCGAG
CGGTTAGACGTGGAAGGCAGCACTCGATGGATCACTGAAGTCTATGACAC
TCCGGGGCTTTTTGACCGAGATGATTTGGATATCTTTTACAAAgcagaca
ttgaagatcacgtacgagctttgcaaagagctagcacTTTGATCATGACT
ATCAAAGTCGATGAAGGAATTGATTCAGCTGTCTGGGATTCTCTGCAGAC
GTACAGAGAATTGTTTGGTGGTTCCATGTTTTCCATGTTGGCTCTAGTTC
TCACCATAAATGAACCTGGGAGTGCCAAAAAGCTGGATGAGACTGTTGAG
CGTCATTGGCCGACTATCACTGGAGTGAACAAAGATATTTTGAAAGAAAA
CATGTTTGCAGTTAGCCTGCAGGACCTTCGAACACTCGAAGAATCTCGTT
CGCATGAAGTAGTGGAACAACTCGCAAAGCTGTGTCGTCAGAATTCGATG
AAGCCGCTAGGAGCGTTCGTGGAGCATTTCAACAAAATCAGGACGGCTCT
GAGTTCTCAGGCCGGGGGCGTGAGCCAACGTTACCAGGAGCTGCTTAACT
CGGGATGGAGTGCGTATGAAGAGCTTACAAGCCAGTACGAGGGTAGCGGG
TATGTTCGCATGAAATGTTCCGGACCAAATTCATTCAACGGCTTCATCAT
GAAAGGGAAAATGTCTACCAGGGGAGAAAAGAAAAGTCTTCTTGCAAAAT
TGATACCAAGCAGGGGAAGAACCGTATTAGCTGTAAAGACAGATTTGACA
GTATCATATGGGGAATGGAGCGGGTTTGCCAAAGAGCACAAGAATGAAGA
GAATCGAAGCGACCTGATGTGGAAGTTCGGAGAAAGACTGTATCGAAATG
GGTTTGGTGTCATAGTCCGTCGTGGTGGGTGTCAGCGGCGCCTCGGGTTT
AGTGTAGAACATCATGAAGTTCACATCTTTCAGCCGAGCGAAAAGGCGCA
GCAAGAAGTTAACAGGGCGCTCTACTCGCTCACAAACGAATGTCCGGAGG
AGCTGAGTGCCGGGGCAATTGCCGATATAGCCGATGAAGCACTTCCGCTC
GCGTTACACTTCCGCGAAAAAATCAGGAGGGAACGGTTCCATCGAGTTCC
TCGGAATAGTTCTTCGAGTTCAGGATAA