Gcaud8731.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8731.t1
Unique Name	Gcaud8731.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	319

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_61_length_58397_cov_4.831458	contig	NODE_61_length_58397_cov_4.831458:51049..52180 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMH080CT
PFAMs	Exo_endo_phos
Max annot lvl	2759\|Eukaryota
Evalue	6.42e-35
EggNOG OGs	2DFRS@1\|root,2S5SW@2759\|Eukaryota
Description	Endonuclease/Exonuclease/phosphatase family
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8731	Gcaud8731	Gracilaria caudata M_176_S67 male	gene	NODE_61_length_58397_cov_4.831458 51049..52180 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8731.t1	Gcaud8731.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_61_length_58397_cov_4.831458 51049..52180 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8731.t1.stop1	Gcaud8731.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_61_length_58397_cov_4.831458 51049..51051 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8731.t1.CDS1	Gcaud8731.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_61_length_58397_cov_4.831458 51049..51928 -
Gcaud8731.t1.CDS2	Gcaud8731.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_61_length_58397_cov_4.831458 52104..52180 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8731.t1.exon1	Gcaud8731.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_61_length_58397_cov_4.831458 51049..51928 -
Gcaud8731.t1.exon2	Gcaud8731.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_61_length_58397_cov_4.831458 52104..52180 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8731.t1.intron1	Gcaud8731.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_61_length_58397_cov_4.831458 51929..52103 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8731.t1.start1	Gcaud8731.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_61_length_58397_cov_4.831458 52178..52180 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_61_length_58397_cov_4.831458:51049..52180-
coding sequence from alignment at NODE_61_length_58397_cov_4.831458:51049..52180-

mRNA sequence

>Gcaud8731.t1 ID=Gcaud8731.t1|Name=Gcaud8731.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=319bp
MPSVHVWQAFSFFSATLPGFVLVPCRRLQDLLQELGSFDIICFQELFTSS
GSRKVQFLRKLEQYYGFSHHVSAPTPGFRGLLSFPPKIIDGGLVIASRFE
IIQTDYHTYSRANIESIDFIVGKGVLYARVALPMLNSSKCLMHVFTTHMQ
ANNGLDVDFATVRQSQLQELAAFVADKTSDDPAGPILLAGDFNVDGRRDS
GNGSSSAEYVQMMNVLHKVRSTSPLRDLLYEVSGNMHPVTSAGGLHGDNQ
KNERLDYIFFSSNNESEARSPCLVTDISSSVHVEPWKISGRPYRTLSDHY
AVVANFKIEQMGNHSINS*

spliced messenger RNA

>Gcaud8731.t1 ID=Gcaud8731.t1|Name=Gcaud8731.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=957bp|location=Sequence derived from alignment at NODE_61_length_58397_cov_4.831458:51049..52180- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCAGTGTCCATGTTTGGCAAGCCTTTTCGTTCTTCTCCGCCACGCT
TCCTGGTTTTGTGCTTGTTCCTTGCAGACGCCTTCAGGACTTGTTGCAAG
AATTGGGCTCATTTGATATTATTTGCTTCCAAGAGCTGTTCACGTCGAGT
GGATCTCGGAAAGTGCAGTTTCTTCGAAAACTCGAACAGTACTATGGTTT
TAGTCATCATGTATCTGCCCCTACGCCTGGATTCAGAGGACTGCTTTCTT
TTCCGCCTAAGATTATTGACGGGGGGCTGGTCATAGCGTCCCGATTCGAG
ATCATTCAAACAGACTACCACACATATTCTCGAGCGAATATCGAATCGAT
AGATTTCATCGTTGGTAAAGGAGTGCTTTATGCCCGGGTCGCGTTACCCA
TGCTAAACTCCAGTAAGTGTTTGATGCATGTATTTACCACGCATATGCAA
GCAAACAATGGTTTGGATGTTGATTTCGCCACCGTTCGCCAATCCCAGCT
TCAAGAGCTGGCTGCATTCGTTGCTGATAAAACCAGTGATGATCCAGCTG
GTCCTATCCTTCTTGCAGGGGACTTCAACGTCGATGGTCGTCGTGATTCC
GGTAATGGATCCTCTTCAGCAGAGTATGTGCAGATGATGAATGTGCTCCA
CAAAGTACGAAGTACCTCTCCGTTAAGAGATTTACTGTATGAAGTGAGCG
GGAACATGCATCCTGTGACTAGCGCAGGAGGACTTCATGGGGACAATCAA
AAGAATGAACGCCTTGATTACATATTCTTTAGCTCCAATAACGAGAGTGA
AGCCCGTTCACCATGTCTCGTTACGGACATATCAAGTTCTGTTCATGTGG
AGCCATGGAAGATATCTGGGAGACCATATCGAACCTTGAGTGACCACTAT
GCCGTCGTGGCCAACTTCAAAATAGAACAAATGGGCAATCACAGCATTAA
TTCATGA

protein sequence of Gcaud8731.t1

>Gcaud8731.t1 ID=Gcaud8731.t1|Name=Gcaud8731.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=319bp
MPSVHVWQAFSFFSATLPGFVLVPCRRLQDLLQELGSFDIICFQELFTSS
GSRKVQFLRKLEQYYGFSHHVSAPTPGFRGLLSFPPKIIDGGLVIASRFE
IIQTDYHTYSRANIESIDFIVGKGVLYARVALPMLNSSKCLMHVFTTHMQ
ANNGLDVDFATVRQSQLQELAAFVADKTSDDPAGPILLAGDFNVDGRRDS
GNGSSSAEYVQMMNVLHKVRSTSPLRDLLYEVSGNMHPVTSAGGLHGDNQ
KNERLDYIFFSSNNESEARSPCLVTDISSSVHVEPWKISGRPYRTLSDHY
AVVANFKIEQMGNHSINS*

mRNA from alignment at NODE_61_length_58397_cov_4.831458:51049..52180-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8731.t1 ID=Gcaud8731.t1|Name=Gcaud8731.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1132bp|location=Sequence derived from alignment at NODE_61_length_58397_cov_4.831458:51049..52180- (Gracilaria caudata M_176_S67 male)
ATGCCCAGTGTCCATGTTTGGCAAGCCTTTTCGTTCTTCTCCGCCACGCT
TCCTGGTTTTGTGCTTGTTCCTTGCAGGTATGGTGGCTCTCCAATACTTT
GTAGAGAACGCATCGCCCGTCTGGATGAGAGGCGCGGAGAACGCTTTGCG
GAACCGCTCTCCGAGTGGTCCTTACACTGATGTTGTGCGTTTTATGACTT
TGAACACATTCATACGACCAATTGGTGTCGGTTTTGGCGATTACAAGGAC
AGACGCCTTCAGGACTTGTTGCAAGAATTGGGCTCATTTGATATTATTTG
CTTCCAAGAGCTGTTCACGTCGAGTGGATCTCGGAAAGTGCAGTTTCTTC
GAAAACTCGAACAGTACTATGGTTTTAGTCATCATGTATCTGCCCCTACG
CCTGGATTCAGAGGACTGCTTTCTTTTCCGCCTAAGATTATTGACGGGGG
GCTGGTCATAGCGTCCCGATTCGAGATCATTCAAACAGACTACCACACAT
ATTCTCGAGCGAATATCGAATCGATAGATTTCATCGTTGGTAAAGGAGTG
CTTTATGCCCGGGTCGCGTTACCCATGCTAAACTCCAGTAAGTGTTTGAT
GCATGTATTTACCACGCATATGCAAGCAAACAATGGTTTGGATGTTGATT
TCGCCACCGTTCGCCAATCCCAGCTTCAAGAGCTGGCTGCATTCGTTGCT
GATAAAACCAGTGATGATCCAGCTGGTCCTATCCTTCTTGCAGGGGACTT
CAACGTCGATGGTCGTCGTGATTCCGGTAATGGATCCTCTTCAGCAGAGT
ATGTGCAGATGATGAATGTGCTCCACAAAGTACGAAGTACCTCTCCGTTA
AGAGATTTACTGTATGAAGTGAGCGGGAACATGCATCCTGTGACTAGCGC
AGGAGGACTTCATGGGGACAATCAAAAGAATGAACGCCTTGATTACATAT
TCTTTAGCTCCAATAACGAGAGTGAAGCCCGTTCACCATGTCTCGTTACG
GACATATCAAGTTCTGTTCATGTGGAGCCATGGAAGATATCTGGGAGACC
ATATCGAACCTTGAGTGACCACTATGCCGTCGTGGCCAACTTCAAAATAG
AACAAATGGGCAATCACAGCATTAATTCATGA

Coding sequence (CDS) from alignment at NODE_61_length_58397_cov_4.831458:51049..52180-

>Gcaud8731.t1 ID=Gcaud8731.t1|Name=Gcaud8731.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=957bp|location=Sequence derived from alignment at NODE_61_length_58397_cov_4.831458:51049..52180- (Gracilaria caudata M_176_S67 male)
ATGCCCAGTGTCCATGTTTGGCAAGCCTTTTCGTTCTTCTCCGCCACGCT
TCCTGGTTTTGTGCTTGTTCCTTGCAGACGCCTTCAGGACTTGTTGCAAG
AATTGGGCTCATTTGATATTATTTGCTTCCAAGAGCTGTTCACGTCGAGT
GGATCTCGGAAAGTGCAGTTTCTTCGAAAACTCGAACAGTACTATGGTTT
TAGTCATCATGTATCTGCCCCTACGCCTGGATTCAGAGGACTGCTTTCTT
TTCCGCCTAAGATTATTGACGGGGGGCTGGTCATAGCGTCCCGATTCGAG
ATCATTCAAACAGACTACCACACATATTCTCGAGCGAATATCGAATCGAT
AGATTTCATCGTTGGTAAAGGAGTGCTTTATGCCCGGGTCGCGTTACCCA
TGCTAAACTCCAGTAAGTGTTTGATGCATGTATTTACCACGCATATGCAA
GCAAACAATGGTTTGGATGTTGATTTCGCCACCGTTCGCCAATCCCAGCT
TCAAGAGCTGGCTGCATTCGTTGCTGATAAAACCAGTGATGATCCAGCTG
GTCCTATCCTTCTTGCAGGGGACTTCAACGTCGATGGTCGTCGTGATTCC
GGTAATGGATCCTCTTCAGCAGAGTATGTGCAGATGATGAATGTGCTCCA
CAAAGTACGAAGTACCTCTCCGTTAAGAGATTTACTGTATGAAGTGAGCG
GGAACATGCATCCTGTGACTAGCGCAGGAGGACTTCATGGGGACAATCAA
AAGAATGAACGCCTTGATTACATATTCTTTAGCTCCAATAACGAGAGTGA
AGCCCGTTCACCATGTCTCGTTACGGACATATCAAGTTCTGTTCATGTGG
AGCCATGGAAGATATCTGGGAGACCATATCGAACCTTGAGTGACCACTAT
GCCGTCGTGGCCAACTTCAAAATAGAACAAATGGGCAATCACAGCATTAA
TTCATGA