Gcaud873.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud873.t1
Unique NameGcaud873.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length80
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2449_length_5635_cov_4.650613contigNODE_2449_length_5635_cov_4.650613:2052..2549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud873Gcaud873Gracilaria caudata M_176_S67 malegeneNODE_2449_length_5635_cov_4.650613 2052..2549 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud873.t1Gcaud873.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2449_length_5635_cov_4.650613 2052..2549 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud873.t1.CDS1Gcaud873.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2449_length_5635_cov_4.650613 2052..2151 +
Gcaud873.t1.CDS2Gcaud873.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_2449_length_5635_cov_4.650613 2263..2288 +
Gcaud873.t1.CDS3Gcaud873.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_2449_length_5635_cov_4.650613 2436..2549 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud873.t1.exon1Gcaud873.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2449_length_5635_cov_4.650613 2052..2151 +
Gcaud873.t1.exon2Gcaud873.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_2449_length_5635_cov_4.650613 2263..2288 +
Gcaud873.t1.exon3Gcaud873.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_2449_length_5635_cov_4.650613 2436..2549 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud873.t1.intron1Gcaud873.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_2449_length_5635_cov_4.650613 2152..2262 +
Gcaud873.t1.intron2Gcaud873.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_2449_length_5635_cov_4.650613 2289..2435 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud873.t1.stop1Gcaud873.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2449_length_5635_cov_4.650613 2547..2549 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud873.t1 ID=Gcaud873.t1|Name=Gcaud873.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=80bp
GLLPNVTDVLKSVKSVSGKLFEWDFVPCKDLSDFAKTGTKTQLPAERAQR
KLYKRPLTFANVLAWTRNGLKPMVSVKAS*
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spliced messenger RNA

>Gcaud873.t1 ID=Gcaud873.t1|Name=Gcaud873.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=240bp|location=Sequence derived from alignment at NODE_2449_length_5635_cov_4.650613:2052..2549+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
GGCTTACTGCCGAATGTTACGGACGTGTTGAAATCTGTGAAAAGCGTGTC
GGGGAAACTGTTCGAGTGGGACTTTGTGCCCTGTAAGGATCTATCAGATT
TTGCAAAAACTGGCACGAAAACACAGCTACCTGCGGAACGTGCACAGAGG
AAGCTTTACAAACGGCCTTTGACGTTTGCAAACGTCCTTGCGTGGACACG
GAATGGCTTAAAGCCAATGGTTTCGGTGAAGGCATCTTGA
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protein sequence of Gcaud873.t1

>Gcaud873.t1 ID=Gcaud873.t1|Name=Gcaud873.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=80bp
GLLPNVTDVLKSVKSVSGKLFEWDFVPCKDLSDFAKTGTKTQLPAERAQR
KLYKRPLTFANVLAWTRNGLKPMVSVKAS*
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mRNA from alignment at NODE_2449_length_5635_cov_4.650613:2052..2549+

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud873.t1 ID=Gcaud873.t1|Name=Gcaud873.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=498bp|location=Sequence derived from alignment at NODE_2449_length_5635_cov_4.650613:2052..2549+ (Gracilaria caudata M_176_S67 male)
GGCTTACTGCCGAATGTTACGGACGTGTTGAAATCTGTGAAAAGCGTGTC
GGGGAAACTGTTCGAGTGGGACTTTGTGCCCTGTAAGGATCTATCAGATT
GTAAGTTTCACAGAATATGTTTCGTCTATTCTAGTCATGCCTTTGTTCTC
GCTACAGGTGATGAACACCTAGAGCAGGAACAAAACACAAGCTCTGACGC
ATAAGGTTTAGTTGCAAAAACTGGCACGAAAACACAGGTAAGTCATCTTG
TGCGTGCATATGGTCGGGTGAAGGCAACACCAACACTTGTGTAGACGTGC
AGGTGTTCACTTCTGAAGCTGCACGATGCCCCATATGCGCTACGGATGAC
CAATGCACATCCATTGTTTGTAATCTTGCCACAGCTACCTGCGGAACGTG
CACAGAGGAAGCTTTACAAACGGCCTTTGACGTTTGCAAACGTCCTTGCG
TGGACACGGAATGGCTTAAAGCCAATGGTTTCGGTGAAGGCATCTTGA
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Coding sequence (CDS) from alignment at NODE_2449_length_5635_cov_4.650613:2052..2549+

>Gcaud873.t1 ID=Gcaud873.t1|Name=Gcaud873.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=240bp|location=Sequence derived from alignment at NODE_2449_length_5635_cov_4.650613:2052..2549+ (Gracilaria caudata M_176_S67 male)
GGCTTACTGCCGAATGTTACGGACGTGTTGAAATCTGTGAAAAGCGTGTC
GGGGAAACTGTTCGAGTGGGACTTTGTGCCCTGTAAGGATCTATCAGATT
TTGCAAAAACTGGCACGAAAACACAGCTACCTGCGGAACGTGCACAGAGG
AAGCTTTACAAACGGCCTTTGACGTTTGCAAACGTCCTTGCGTGGACACG
GAATGGCTTAAAGCCAATGGTTTCGGTGAAGGCATCTTGA
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